RNA id: TU555288


Basic Information

Item Value
RNA id TU555288
length 981
RNA type TUCP
GC content 0.47
exon number 4
gene id LOC110525585
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24655788 ~ 24715090 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATATTTTGGGATTCTCTTTATTGTCCGTTTACCTTTAGAAGTACTGGATATGTTATTTCCTCCTTGGAGGAGTCTATTGAAACCATTTGGAGGGATAGAATGGAGGTGCTGACTGAATggctgcactcttagaaaaaagggttccaaataGGTTCTTCATctgtccccatagaataaccATTTTTGGCTCCAGGTAGCACTCTTTTGggatccatgtagaaccctctgtgttaatggttctacatggaactaaaAAGGGGCCTTCAaggggttttcctatggggacagccgaagaaccctttttaggttctagatagcatctttttttctaagagtgtgtagTGGAACATAGGGACATTTTGGGCGGATATTAGTGGAAAAGCACTGTTGTCTGACCTTGTCATGATTATgatttctctgcttctctcttccctttcAGGGCCCTTCTGGACCCACATTCTGTTCACCTGGACCCTGAAGGATGGTCTCAACATCTACATCAATGGGACATTCAACACCAGTGACCCCACTGGCAACGTGTCTATGAACTATGGAGACCCTTACCCTGACCTGGTCATTGGGACAGGAAATGACCAGTCCTATGGACACCATTTGACAGGAGCCTTTGATGAGTTTATCATCTGGGAGAGGGCTCTGTCACCACAGGAGATCCTTATGTACTACAAGGCTGCCATAGGTGATGCTTGGACTTATCCTACCACAGCAAGTGTTCCTAAAGAAGCCTCCTCTACGACACAAACACCGGGAGTCACAGATGTGTCCTATTCTATCAACACCAGGCTGAGTGAGGAGATCCACAGCTCCCAGGACCCTCTGCCCATGCAAGGCTTCCTGGAGTTTCTGCCATTCAGCCTGCCCAACAAGACCATCCCCCAAGACACTGCCAACAACCTCACACAGGCCTTTCTGAAGAGTGTGGGAGAAGTGCTGTCTTCTGAAGTGGCTCGAGAGGATGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU555303 lncRNA downstream 5813 24700369 ~ 24700758 (-) True G488535
TU555311 lncRNA downstream 20285 24686086 ~ 24686286 (-) True G488543
TU555301 lncRNA downstream 30984 24675321 ~ 24675587 (-) True G488533
TU555276 lncRNA downstream 62354 24643709 ~ 24644217 (-) True G488508
TU555275 lncRNA downstream 63792 24642217 ~ 24642779 (-) True G488507
TU555287 lncRNA upstream 5027 24714447 ~ 24715051 (-) True LOC110525585
TU555342 lncRNA upstream 35442 24744862 ~ 24788105 (-) True G488574
TU555387 lncRNA upstream 90096 24799516 ~ 24800711 (-) True G488618
TU555390 lncRNA upstream 94146 24803566 ~ 24804010 (-) True G488620
TU555417 lncRNA upstream 128176 24837596 ~ 24839086 (-) True G488645
XM_036979699.1 mRNA downstream 72213 24597970 ~ 24634358 (-) False ep400
XM_021605835.2 mRNA upstream 163803 24873223 ~ 24885005 (-) False piwil1
XM_021605836.2 mRNA upstream 163803 24873223 ~ 24885005 (-) True piwil1
XM_021605837.2 mRNA upstream 202207 24911627 ~ 24917852 (-) True LOC110525589
XM_021605839.2 mRNA upstream 463441 25172861 ~ 25375480 (-) False LOC110525591
XM_036979719.1 mRNA upstream 463441 25172861 ~ 25375482 (-) False LOC110525591
TU555289 other downstream 31670 24660897 ~ 24674901 (-) False LOC110525585
TU555138 other downstream 352748 24353533 ~ 24353823 (-) True G488386
TU554111 other downstream 988788 23713875 ~ 23717783 (-) True LOC110525552
TU554033 other downstream 1121017 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other downstream 1121017 23583036 ~ 23585554 (-) True LOC110525180
TU555826 other upstream 396785 25106205 ~ 25106570 (-) True G489038
TU556319 other upstream 787543 25496963 ~ 25497489 (-) True G489511
TU557298 other upstream 1570287 26279707 ~ 26283169 (-) True LOC110525606
TU557449 other upstream 1746312 26455732 ~ 26457841 (-) True tmem230b
TU557799 other upstream 1837802 26547222 ~ 26551627 (-) True LOC110525619

Expression Profile