RNA id: XM_021605835.2


Basic Information

Item Value
RNA id XM_021605835.2
length 4539
RNA type mRNA
GC content 0.49
exon number 21
gene id piwil1
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24873223 ~ 24885005 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGCGTTGAACTGTTGTTCATTTCATTCGCAAATTTGACGAGCGTAGTAATACTTTGAAGTGAGAAGACCTACACATACTGCGTTCAAGCAAGACAAAAGTTTAATTGCTGCTGCTGATTCGTTCTTTGACTAGGTTGAGTTTGTTTTAGAAACTGAAAATGACTGGCCGTGCACGAGCACGATCAAGGGGCCGAGCGCGCGGTCAAGAGACCGCGGCACCTGGCGTGACACCCTTTCAGGAGACAGCACGAGAAGCTCCCCCCTCTGAGGGTGAGCTTGTGGGTCGAGGAAGACAGAGAACTGCCCCAGGGGCTGTGTCCTCCGAAGCTGTTATTCAGATATCTGCAGGGTTTCAGCAGGTGAAgattggagagagaggtggacggCGTCGTGACTTTCATGATGCAGGAATCAACACCAGGCAGGCTATGGAGCATGTGAGAGAGTCCAAGTCTGGTTTCTCTGGCTCTCCCATTGAGCTGAAAGCCAACTTCTTCAAGATCCTGTCCCGCCCTCAGTGGGTGCTGTACCAGTACCATGTGGACTTCAAGCCCGTCATGGAGTCACGGCGCCTACGTTCTGCCCTCATGTATCAGCATGAGGAGACACTAGGCAAAGCTCGCACCTTTGATGGAGCCCTCCTCTTCCTGCCTCACAAACTGCACAACACGGAGACTGTGCTGTACAGTGAGACCAGAATGGGTGAGAAAGTCCAGATCACTGTCACTCTGACCAATGAGCTGCCCcccacttctccagtgtgcctgcAGTTCTACAACATCATCTTCAGAAGAGTACTGAGGATGCTGAACATGCAGCAGATTGGACGCCATTACTACAACCCAACAGACCCACTCAATATCCCACAGCACAGGCTGACCATCTGGCCCGGCTTTACTTCCACCATCCTGCAGTACGAGTCCAACATCATGCTGTGCACGGACGTGAGCCACAAGGTGCTGCGCAGTGAGACGGTGCTCAGCTTCATGATGGGCCTCAGGCAGCAGAGTGGAGATCAGCGCTTCCCAGAGGCCTGCACCAAGGAGCTGGTGGGACTCATCGTCCTCACCAAGTACAACAACAAAACCTACAGGATTGATGACATTGCGTGGGACCATACTCCCAACAACACATTCAAGAGGGGAGACTCTGAGATTTCTTTCAAAGACTACTACAAGGCACAATATGGTCTGGACATCACCGACGGCAACCAGGTGCTTCTGATCAGCCATATGAAGAAGATTGGTCCTTCTGGAGGACCGCcccaagggccagccatgcttgTCCCAGAGTTCTGCTACCTCACAGGCCTGACTGACAAGATGCGTGCTGACTTCAACATCATGAAAGAcctgtccacccacaccagactgACCCCAGAGCAGAGGGAGGGGCGGCTCAACCGCTTCGTTGGGAACATCCACCAGAACACGGAGGCCCAGACAGAGCTGAATACCTGGGGACTCAACTTTGACAACAAACTCCTGAGCCTCACAGGCAGGGTCCTCCCTTCGGAAAGGATTGTGCAGGGATCTAGAACGTATGAGTACAACCCCTGGCAAGCAGACTGGTCCAAGGAAATGAGAGGCATCCCACTGATCAGTTGCCGACCACTGGAGAACTGGTTAATGTTCTTCACCCGCAGAAACAATGATGTGGCCCAGGCCCTCCTGCAGACCCTCAACAAGGTCTCCACACCCCTGGGCATCCGCATGCAGAGGGCCATcatGGTGGAGTACGAGGACCGTCAGGAGTCTCTGCTCAGGGCCCTGCAGCAGAATGTTAAGAAAGAAACCCAGATGGTGGTGGTGGTCCTGCCCAGCAACAGAAAGGACAAGTACGACAGTGTGAAGAAGTATCTGTGTGTGGACTGCCCCACACCCAGCCAGTGTGTGGTGGCCCGCACCCTCTGCAAACAACAGGCCCTCATGACCGTGGCCACCAAGATCGCCCTGCAGATTAATTGCAAGATGGGAGGAGAGCTGTGGAGCGTGGAGATCCCACTGAAGCAGCTGATGATTGTGGGTATTGACTGCTACCACGACACGGCTGCTGGCAAGAGATCAATTGGAGCTCTGGTGGCCAGTCTTAACCAGGGCATGTCCAGGTGGTTCTCAAAGTGTGTGCTGCAGAACCGTGGACAGGAGATCATGGACGGACTCAAGGTGGCGCTGCAAGGTGCCCTGAAGGCGTGGCTGAAGCACAACAACTGCCTGCCGTCACGTATCATTGTGTACAGAGACGGAGTGGGAGACGGGATGCTGCAGAGTGTGGTCAACTACGAGGTGCCACAGATCATGGAGTCCATCAAGACCATGGGACACGACTATGCACCCAAACTAACCTTGGTGGTTGTGAAGAAGCGCATCAGTTCCAGGTTCTTTGCCCGCATCGATGGCAAGCTGACCAACCCTCCCCCTGGAACATGCATCGATACTGAGGTCACCCGCCCAGAATGGTACGACTTCTTCATTGTCAGCCAGGCCGTCCGCATGGGCAGTGTCTCCCCAACCCACTACAATGTGGTGTACGACAGCAGTGGACTGAAGCCTGACCACATGCAGCGACTGACCTACAAACTTTGCCACATGTACTACAACTGGCAGGGAATCATCCGAGTGCCTGCACCCTGTCAATACGCCCACAAATTGGCCTTCCTGGTGGGCCAAAGCATCCACAGAGAGCCCAACATGAACCTGGATGACTTCCTTTACTACCTGTAAGAGAGCACAAGCTAACTAAAGAGCACATTGGGGAACTTGGTTTCCTTGAAACTGTTTGATTTTTGTTCAGGAAATTGACTGAATTTACTTAGGGGTAAAGTGGTTAGGATATTCCCCAATTTACAGGAGAGTgaaaccatttttattttttttatacttcaGCAATTTGATTATCTTCTGTTTTATGCTGTTTTATTTGAAAAAATATTTGTAGATGGTCATTGCAAAGTGTTTTATTTGTGTGACATGGTATGAGACTGTTGAGAAGTTTGCTACCTCAGCTTTTATTTTGGCTgtacagtgcatttagaaagtattcagaccccttgactttctccacattgttacgttacagccatattaaaaaaattgattaaattgctgTTTTTCTCAACAATTTACACTCAATACCTaataatgaccaagcaaaaatatataagtTTTCAGACTCTTTACGGagtactttgtggaagcacctttggcagcgagtacaacctcaagacttcttgggtatgacgttacaagcttggcacacctgtatttggggagtttctcccaatctctgcagatcctctcaagctctgtcaggttggatggggagcgttactgcacagctattttcaggtctccagagatgttcaagtctgggctctggctgggccactcaaagacaatcagagacttgtcccgaagccacacctgcattgtcttggctgtgtgcttagggctgttgtccatttggaagatgaaccttcgccctagtctgaggtcctgagcgctctggagcaagtttttaTTGAGGATCTCTGTTAAtgtttgcctcgatcctgactggtctcccagtccctgcctctgaaaaacctccccacagcatgatgctgcctccaccatgcttcaccgtagggatggtgccaggtttcctccagacgtgaagcttggctttcaggccaaatagttaaatcttggtaTCATCAGACCCAATAATGTTATTTCTCATGGTCcccgagtcctttaggtgtcttttggcaaactccaagcggctgctgccttttactgaggagtggcttccatctggcataCCATAAAgacctaattggtggagtgctgcagagagggttgtccttctggaaggttctcccatctccacagaggaactctggtcactctgacagagctccatcgggttcttggtcacctctgtgaccaaggcccttctcccctgattgctcagtttggccggccagctctaggaagtgtcttggtggttccaaactaaaAGGTCCTTTttatagagacaggtgtgtgcctttccgaatcatgtccaatcaattgaatttaccacaggtggactccaatcaagttgtagaaacatctgaaggatgatcaatggaaacaatgcacctgagctcaatttcgagtctcatagcaaagggtctgaaaacgtatgtaaagaaggtatttctgttttttattgttaatacatttgcaaaaatttctaaacctgttttacttttgtcatcatggggtattttgtgtagattgaggaaaaatatttaatacattttagaataaggctgtaacataacaaaatgtggaaaaacttaCTTTCCGAACGCACCGTACCTCTTTGTTCAATATCACAGTGAACATTAAGGTTATTGCCTGGGTTGAAAAATTATTGTTTCAACTTTGGCGCAAAGTTGCACTTATGACatgttgttaaaaaaaaaaatgcagttaAATCAATTGATTAAAATAATTGTGGATCAAGTTTTGTTTAATTTGATTACCCTTCAGTAAAAGTTAACTTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU555421 lncRNA downstream 30256 24839999 ~ 24842967 (-) True G488646
TU555417 lncRNA downstream 34137 24837596 ~ 24839086 (-) True G488645
TU555390 lncRNA downstream 69213 24803566 ~ 24804010 (-) True G488620
TU555387 lncRNA downstream 72512 24799516 ~ 24800711 (-) True G488618
TU555342 lncRNA downstream 85118 24744862 ~ 24788105 (-) True G488574
TU555478 lncRNA upstream 22219 24907224 ~ 24907442 (-) True G488693
TU555479 lncRNA upstream 34128 24919133 ~ 24919436 (-) True G488694
TU555482 lncRNA upstream 36180 24921185 ~ 24921431 (-) True G488697
TU555485 lncRNA upstream 38674 24923679 ~ 24923888 (-) True G488700
TU555495 lncRNA upstream 51327 24936332 ~ 24936571 (-) True G488709
XM_036979705.1 mRNA downstream 158133 24655788 ~ 24715090 (-) False LOC110525585
XM_036979706.1 mRNA downstream 158133 24655788 ~ 24715090 (-) False LOC110525585
XM_036979708.1 mRNA downstream 158134 24655788 ~ 24715089 (-) False LOC110525585
XM_036979707.1 mRNA downstream 158135 24655788 ~ 24715088 (-) False LOC110525585
XM_036979699.1 mRNA downstream 238865 24597970 ~ 24634358 (-) False ep400
XM_021605837.2 mRNA upstream 26622 24911627 ~ 24917852 (-) True LOC110525589
XM_021605839.2 mRNA upstream 287856 25172861 ~ 25375480 (-) False LOC110525591
XM_036979719.1 mRNA upstream 287856 25172861 ~ 25375482 (-) False LOC110525591
XR_002473781.2 mRNA upstream 564014 25449019 ~ 25451212 (-) False LOC110525597
XM_021605858.2 mRNA upstream 758227 25643232 ~ 25660249 (-) True LOC110525601
TU555288 other downstream 163803 24706571 ~ 24709420 (-) False LOC110525585
TU555289 other downstream 198322 24660897 ~ 24674901 (-) False LOC110525585
TU555138 other downstream 519400 24353533 ~ 24353823 (-) True G488386
TU554111 other downstream 1155440 23713875 ~ 23717783 (-) True LOC110525552
TU554033 other downstream 1287669 23583036 ~ 23585554 (-) False LOC110525180
TU555826 other upstream 221200 25106205 ~ 25106570 (-) True G489038
TU556319 other upstream 611958 25496963 ~ 25497489 (-) True G489511
TU557298 other upstream 1394702 26279707 ~ 26283169 (-) True LOC110525606
TU557449 other upstream 1570727 26455732 ~ 26457841 (-) True tmem230b
TU557799 other upstream 1662217 26547222 ~ 26551627 (-) True LOC110525619

Expression Profile