RNA id: XM_021605837.2


Basic Information

Item Value
RNA id XM_021605837.2
length 5975
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110525589
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24911627 ~ 24917852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGTGTCTGCATATACCTGCGCTGGAACGTGCTAAATTCTGACACTTTTCTATCTAAAGTTTTAGTCGGAAATGGGGCAAATGGCCAGTGAGTAGTTTACAAGCTCTAAAATGCTGTGATGGTTGGTCTACTCTACAGGCTGTTCCGCACCATTTGAAAAAAATCACCGTGTCAGTTTCATCTTTCTTATGCAAAGTAGCTGTCTTTGAAGGCGGATCTTTTGGCAGGTTAGCCCAGGACAGTTGCAACGACAAGCTCAAACGAGAAATGCCACCAACCAGTCCAAACTGAATAGGTCTGTCTCTGGAGTGGTTAGTTAGGAATAGACCTCAACTCTGTTTTAGTTAATAAGGTTACTACACCGTTTGCGTGGATTTATCGTGCGCATTTAGGCTACTCAAACGCGGTGCAAGAGGAAGAGCAATTTAGTTGAGTTGGTAAATGACAGACTGGTTCCATTCGCGCTGCAGGACCTAATTTTAATGTCTATGTGCAGGACAGAGACCGGAGGATTCCGACCTGACGTTGTTGAAACCGAGGAGTACTGTCCCTTAACGCACTTTTAGAAGCTCTGGAACGTTTGTTTGGATCGGAACACTTTTATCCAATTAGAAAAAGAACCAAGGCAGACAAAGAAATTGTGCAACGGACTAGGCACAACTACAGTAAATGCATTTAATCTCTTAACATGTTGGATTTTTCTGCAACAAATTGATACACTTCAAAGCATGGACATTATGGTTCAAAGAGGAGAGACTATGCATTCCACTGCTAAACTGAGCCTTATCAATGTGCTACTGGTCTGTCTGAGTGGTGGCTGCTCAGCCATTAGCTCCATAGACCCAGACCGGCCGGGTGAAGGGAGATGTCAACAGATTGTCATCCCCCTATGTAAGGACATTGGCTACAACATGACAAGGATGCCCAATCTGATGGGCCATGAGGACCAGAATGAGGCAGCTATCAAACTACATGAGTTTGCCCCTCTCATAGGGTTTGGATGCCACACTCACCTCAAGTTTTTTCTCTGTTCGCTGTATGCACCTATGTGCACGGAGCAGGTATCCACCCCAATCCCTGCCTGCAGAGTGATGTGTGAGCAGGCCAGGCAAAAGTGCTCCCCTATCATGGAGCAGTTCAACTTCCGCTGGCCTGACTCCCTGGACTGCTCCAGACTACCTACTAAAAATGACCCCAACAACCTCTGCATGGAGGCCCCCAACAACGGCTCAGACGAGCCCCCCAAAGGCTCCCACACCCAGCGTCCTGACTTCAGGCTTCAGCGGCCCATGAAGGAGACGGAGAGCAAGGAGACCTGCAGTAACCCAGGCAAGTTCCACTATGTGCAGAAGAGTGAGTCCTGCGCCCCCAAGTGCTACCCCAAAGTGGATGTGTACTGGAGTCAGGGAGATAAGCAGTTCTCTCTGGTGTGGATGGCTATCTGGTCCATCCTCTGCTTCATCTCCAGCTCATTCACTGTCCTCACCTTCCTCATCGACCCCCAGCGATTTAAATACCCCGAGAGGCCTATCATCTTCCTCTCCATGTCCTACTGTGTCTACTCTGTGGGCTACCTGGTCCGTCTGTTTGTGGGAGCAGATAGTATCGCCTGTGACCGGGACAGTGGGGTCCAGTACATCATCCAGGAGGGACTGGAAAGCACGGGCTGCACCATCGTCTTCCTCATCCTCTACTACTTCGGCATGGCCAGCTCCCTCTGGTGGGTCATCCTCACACTCACCTGGTTCCTGGCTGCAGGGAAGAAGTGGGGCCACGAGGCCATCGAGGCCAACAGCAGCTACTTCCACCTGGCGGCCTGGGCCATCCCAGCCATCAAGACCATCATGATCCTGGTGATGAGGAAGGTGGCGGGGGACGAGCTGACGGGAGTGTGCTACGTGGGCAGCATGGACGTGAAAGCTCTCACAGGCTTCGTGCTCATCCCACTCTCCTGCTACCTCATCATCGGCACCTCATTCCTGCTGTCGGGCTTCGTGGCCCTGTTCCACATCCGCAAGATCATGAAGACTGAGGGGGAGAACACGGATAAACTGGAGAAGCTGATGGTACGGATCGGAGTGTTCTCCGTCCTCTACACTGTACCTGCCACCTGCGTTATCGCCTGCTACTTCTACGAGAGGCTCAATATGGACTACTGGAGGAGCCTGGCCGTGGAGCAGAGGTGTGTTGACAGCAGCAGGAACAATGCAGAGTCTGAAGAGTGTGGTATGAAGAGCTCCATCCCGGCCGTGGAGATCTTCATGGTTAAGATCTTCATGCTGTTAGTGGTGGGCATCACGAGTGGCATGTGGATCTGGACCTCAAAAACACTGCAGTCGTGGCAGAATgtatttagcaggaagctgaagAAGAGGACTAGGAGGAAGGCTGCCAGTGTGTTCACAAGCAGTGGGCCTTACATCAAGCCTCACCCAGCACTGAAAGCGCACAACACAAAGTATGAGCCTACCAGGCCCCCTCCTACATGCGTATGAGCTGGCGCTCTCACAGACAGTCTGCGAAACCAAAATCCTTCTAAAGCCCTTACCTAAAACAGACTTTTTAATCAGAGTGCCAACAAGAGACAACAATGTTCATATTTATTTGAAGTATTTTTTTGTTATCTTGATCCATCTCAAGCTACAAGGACAGCCTTTGTTTCAAATATCTGCTACTCCTGGAACCACTTATCCATTTAAGAACATgatagagaaaaaaaaaacgttttgtttCCAAGACAAAGAAATTGGAATAAACCATTTGGATGTGCAATAGATGTTTTCCTTAGTGGCAAAAAAAAGACAgatgaaagacaatgaaaagattCTGACAAAAGGGAGTGAATGGTCTGGGAGATGGAGACCCTTTAGTGTTGCGTTGTTTGGCTTTTTAATGGAAATCAAGGCAGTGTCACATGTTTGGACTGAAGTGAGAAAGCAGCTGTTGAAAGGGGCTCAGGATTGCATGGACTGCCTAATGTGACGCAAAATCACGCCACAACATAAATCAACAAGCACTGGACATCGCAAAAGTGACTATTTGTACAGACAGTTTTCCTGTTGTTGTATCTTTGCTGTTTTATAGCACAAGGGAGCATTTGTATATATTTCTTGAAGTTcatattttattaaaaaaataaataataaaacattccAGTTTTAAATGTCCAAAACTGGAACTGTATATTATAACTGTGTGGGTTTTATATGTCATGTGAATGAGTTCACAATGGGTTTTTACAAAAAGCACATTTCTCAATGACATTATTCCATTGGACATTTGAAGATAGTCATCACTAACCATTGATGTGAAGGTATGGAATATTTCAATCATCCACTgttgtctgagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagccgtgCACACACTTGACTTACAGTATCTCTCTTTTGAGAGGCTTATGCTTTTAATTACATAGACAAATTGGTGTTTGATGTTAGCCTTGTGAAAACTCTGACTTCTGTTGATACCTGATAGAATGGAGTGCACTCTCAATGAAGTACATACAGGATGAAGAAACAATGGCATCTGTACACGTCTGTTTTAATTGTTGAAAAGGAAAGCATCATGGGTAATCCAGAGCCCGCTCCCCCCATAGCGCATTTATTAGAGATGACTAATAGAAAAAAGTTTGATGACATCAAAGAGATTATGAACAAAGCACTTTTATATTATTGTAGAGTCGACCATTTTTAAAGCAAGGTTTTCATATTccattcctattaaaatgttcCTGTTCACGCCCATGTTTCATACATAAGCTATAAGGAAACAAAGGCTTTtaagtttgttttgtttttggttcACAGTTTTTGAGTTTGTTTGTAACATATAAAATCAGACAATATTTATCTAGAGCCTTCGATTTATTTCATCGCAAGAAAAAAGGTGCTAAAATCGAAGACTAGATAAAAAAAGTGCCTGATTTCATGTTAGAAATAAATGGAAAAACTGTgaaccaaaaacaaaacaaacttaATATGCAAATAAGGGTCTGATATGATCATCTCacaaataacctctcactcaaagaaCTCACTCAAGTCAGGCTTTGATTATGTTTCTGAGATAATCAGTCCACTGCTTTTAATGTTTTTTCTCGAATTACAGTTCTGCTCTGACTTCTTTAGGCCTATAGATGAACGTCTATGCAGTTAAGTTCAGATAACACAGATAATGATTTTGTTTTTGTGCCTTTTTGTCAGGTCACTGATTCAGTCACGTGTGTTTTCATGCGTGTGTGTTTTAGGGATGGGGATTATGCAATAATCCTACAGTCATTCAGGACAGGATTAGGCAGTTTGAAGGGTCTGGCTTTGAGAAGAGGATAACTGCAAACAAAATAAACTATATCTGTCATCTACCCTCCTCTTATCACCCAGGCATAGTGATATTTCTAAAGACACATCTGGCCTGGATTTCAAGCTATCATTTTGACTGAGACTCATTTTCAATAGCATGGTAGGCTATTGACAAACTAATATATCTGTTAGCGTACTAATTTGGGTGGGGGTTAAATGCTCTCACACTGTAAACAATTATGTAaacaggctgtcattgtaaattggtatttgttcttaaatgacttgcctggttaaataaaggttaaataaaattcaGGCCACATCCCCTTCAAACTACAAGTCCATTTTGGAGCGGAAACCACACTAACATGAGCTCAGCTACCCTCTGGGTTTTGTCTTTAGGATTTAGAGAGGTTACAGCACAAGACCAAGTGTGTAAAATGTCATTCTAATGTGAGGGTACTTTTTAGCCTATTAGACTTGAATACTCAACTACCAGCAATGAATACCCATTTTCATTAGGTCATACCATAAGAGACAATTTCAGAAAACACCAAAAAACAAGGATCATTCTGCACCTTCATTTTAACTTTAAGGTTTTGTGGCTTTTAATATGCATGAGAAGATCTCCCAGACCCAGGTATAATAATGTTGCAGGTTGAGTGTAAATATGTGCTCTCCCCTGAGGGCATTCAAGTTCCAGCATCAGCCCAACCCGTTTTAACAGTGAAAAGCACATGACTCACTGGCTGAATCAAATTCAAGTAGTTGATACTCTGTGTTGTGAAAAAGGTGAGTGTTTTCGAGGGCTTCAACAGAGGCCACCTGGATAACAGCCCCCGAGGTGTCTGGGAAAGCTGTAAATATGACAGTTACCAACCTCTTCCTCTGGAGCGTATGCTTCTAAGTTACTTCAATGTTTCCCTTTGAAAAGAAAATAGTATGTGAGCAAGGGCACAGTAGTGTCAGCCCAAAATGTTTTGGAATAAACTACACGTGCTTCTGAATTTCTCTCCGGTAGAGTTCTTGTTTTCATGACACTGTATCACAGATGATTAGACCTGCTATTCCTCATTGCTGGCATTGTTTTCCCCTAACAGTGCAAAGGCTTTATAGGTCTGGAGCTATGATTGAATCAACCAAGTGGCTCATTAGATAGTGTGTGTGTCACATGGCCCCTCTCATAGCCCAGTTGTTGTCCCTAGTGATGGTGTGGTAGACAACATGTTTTGTTTGTCCCAGTGGGGAATCTGGCAGCCGGCATGTAACTGGGGATAAGGGTCTTCAGATCACCATATCTCAAAGAATGACCATGGCCCCAATCTGAAAGGCCTCACTCATCCCCCACAGCCCCtatcacactcactctctcattccctcACCCTTCACTTCCTCGCAACTTTTCCTCTCAACAACTCTCCTGTTAATATGACACTCACAGACTGTAGTTCTCTACAGCAGCAGTCTTTTGGGGGAAGTGTACAGTGTTTGACAAAAGAGACCGGAGCTTCTGCTTGTGATCAgcttacccactgggcacaaactgtttgaatcaactttgtttcaacgtaatttgtaAATGAATTGTGACTTTAAACCtgcgtggaaaatacattggatttgaaaaagtaA

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0008406 gonad development biological_process
GO:0007420 brain development biological_process
GO:0001944 vasculature development biological_process
GO:0090504 epiboly biological_process
GO:0009790 embryo development biological_process
GO:0042995 cell projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030165 PDZ domain binding molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K02842 FZD9_10, CD349_50; frizzled 9/10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU555478 lncRNA downstream 4185 24907224 ~ 24907442 (-) True G488693
TU555421 lncRNA downstream 68660 24839999 ~ 24842967 (-) True G488646
TU555417 lncRNA downstream 72541 24837596 ~ 24839086 (-) True G488645
TU555390 lncRNA downstream 107617 24803566 ~ 24804010 (-) True G488620
TU555387 lncRNA downstream 110916 24799516 ~ 24800711 (-) True G488618
TU555479 lncRNA upstream 1281 24919133 ~ 24919436 (-) True G488694
TU555482 lncRNA upstream 3333 24921185 ~ 24921431 (-) True G488697
TU555485 lncRNA upstream 5827 24923679 ~ 24923888 (-) True G488700
TU555495 lncRNA upstream 18480 24936332 ~ 24936571 (-) True G488709
TU555496 lncRNA upstream 20447 24938299 ~ 24938515 (-) True G488710
XM_021605835.2 mRNA downstream 26622 24873223 ~ 24885005 (-) False piwil1
XM_021605836.2 mRNA downstream 26622 24873223 ~ 24885005 (-) True piwil1
XM_036979705.1 mRNA downstream 196537 24655788 ~ 24715090 (-) False LOC110525585
XM_036979706.1 mRNA downstream 196537 24655788 ~ 24715090 (-) False LOC110525585
XM_036979708.1 mRNA downstream 196538 24655788 ~ 24715089 (-) False LOC110525585
XM_021605839.2 mRNA upstream 255009 25172861 ~ 25375480 (-) False LOC110525591
XM_036979719.1 mRNA upstream 255009 25172861 ~ 25375482 (-) False LOC110525591
XR_002473781.2 mRNA upstream 531167 25449019 ~ 25451212 (-) False LOC110525597
XM_021605858.2 mRNA upstream 725380 25643232 ~ 25660249 (-) True LOC110525601
XM_021605860.2 mRNA upstream 786322 25704174 ~ 25768791 (-) False lmx1bb
TU555288 other downstream 202207 24706571 ~ 24709420 (-) False LOC110525585
TU555289 other downstream 236726 24660897 ~ 24674901 (-) False LOC110525585
TU555138 other downstream 557804 24353533 ~ 24353823 (-) True G488386
TU554111 other downstream 1193844 23713875 ~ 23717783 (-) True LOC110525552
TU554039 other downstream 1326073 23583036 ~ 23585554 (-) True LOC110525180
TU555826 other upstream 188353 25106205 ~ 25106570 (-) True G489038
TU556319 other upstream 579111 25496963 ~ 25497489 (-) True G489511
TU557298 other upstream 1361855 26279707 ~ 26283169 (-) True LOC110525606
TU557449 other upstream 1537880 26455732 ~ 26457841 (-) True tmem230b
TU557799 other upstream 1629370 26547222 ~ 26551627 (-) True LOC110525619

Expression Profile