RNA id: TCONS_00032003


Basic Information

Item Value
RNA id TCONS_00032003
length 1211
RNA type mRNA
GC content 0.47
exon number 2
gene id XLOC_016223
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 13376099 ~ 13382726 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATACAGTACAACTGCTCCTCTCCAAGTTCACTGTTCACAGTTGTTGTGAACACGTCATGGTGCTCCACCAAAGAAGAAGAATGTCAAAACAGAACAGCAAACCTATCAGACCTCTGTCTATCCCGCAGTGCCTACCTGGAGAAATACCTTGGACCCTGTCGTTCACCTTTCTTTCTGCCTATATGTGTCACCTACCTGCTCATCTTTGTAGTAGGTGTGGTGGGCAACATCCTAACTTGTATTGTCATTACCCGTCATCGCATCATGCGCACAACGACAAACTACTACCTGTTCAGCCTGGCCATTTCTGACCTCCTTGTGCTGTTGCTTGGCCTCCCGCTGGAGCTTTATGAGCTCTGGAGCAACTATCCTTTTCTGTTTGGAATTTCTGGCTGCTACTTCAAAACCTGTCTCTTTGAGACAGTCTGCTTTGCCTCTGTTCTCAATGTTACAGCCTTAAGTGCAGAACGTTATAGAGCTATCATTCATCCTCTGCACACCAAACATGTTGCGACGAGTGCTCATGCAAAGCGTGTTATCCTTGTGTTATGGGCTGTCTCTCTATTGTGTGCCTTGCCCAATACCAGTATTCATGGTGTGGAGATGTTAAAACCCCGTTTTGGACTTACTTTCCCAGAATCAGGTGTGTGTACAGTGGTACACGATAGGTGGATCTACAACCTGCTGGTGCAAGTGACAGCACTGCTGTTCTTCATACTGCCGATGCTGACTATCAGTGTGCTGTATGTGCTGATTGGCCTACAGCTGCACCGGGAAAGGGAGTGCTTTGATTCAAAGATCGTGCTCAATCAGGATGGGGTCAATCAGAGGGCACGTCATCGACAAGTCACAAAAATGCTTTGTGCATTGGTGATTGTGTTTGGAATCTGCTGGGCTCCCTTTCACATTGATCGTGTAATGTGGAGCTATATTGATGACTGGACTGCAGAGAACCACCACATCTTTGAGTATGTGCATCTTCTATCTGGTGTCTTCTTCTACTTGAGCTCAGTGGTCAATCCCATCCTGTATAACCTCATGTCTTCGCGCTTCAGAGAAATGTTCCGTGAGGTGGTGTGTCAAAAAGACCATCGTCAGCTCTCAATGAGTAGGGTCACATTACGTAGTGTTGTTTCTGCCTCTTTTTCTGCCTCCAATACAGTCTCATTTTCTGTAAAGTTCAACCCACGTGAGCTGccacacacactct

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001607 neuromedin U receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-154 Predicted to enable neuropeptide receptor activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human NMUR1 (neuromedin U receptor 1).

Ensembl:

ensembl_id ENSDART00000017787

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033781 lncRNA downstream 186925 13184227 ~ 13189174 (-) False XLOC_016220
TCONS_00031994 lncRNA downstream 554568 12819999 ~ 12821531 (-) True XLOC_016219
TCONS_00033780 lncRNA downstream 671715 12703957 ~ 12704384 (-) True XLOC_016218
TCONS_00031986 lncRNA downstream 1394794 11976261 ~ 11981305 (-) False XLOC_016213
TCONS_00033782 lncRNA upstream 167841 13550567 ~ 13561727 (-) False XLOC_016224
TCONS_00033783 lncRNA upstream 167841 13550567 ~ 13573442 (-) False XLOC_016224
TCONS_00033784 lncRNA upstream 167841 13550567 ~ 13573898 (-) True XLOC_016224
TCONS_00033785 lncRNA upstream 289386 13672112 ~ 13673864 (-) True XLOC_016225
TCONS_00032005 lncRNA upstream 400667 13783393 ~ 13784508 (-) False XLOC_016227
TCONS_00032001 mRNA downstream 42108 13257124 ~ 13333991 (-) False XLOC_016222
TCONS_00032002 mRNA downstream 42167 13298051 ~ 13333932 (-) True XLOC_016222
TCONS_00032000 mRNA downstream 107535 13255986 ~ 13268564 (-) False XLOC_016222
TCONS_00031999 mRNA downstream 107543 13255986 ~ 13268556 (-) False XLOC_016222
TCONS_00031996 mRNA downstream 121278 13223755 ~ 13254821 (-) False XLOC_016221
TCONS_00032004 mRNA upstream 305898 13688624 ~ 13691834 (-) True XLOC_016226
TCONS_00032012 mRNA upstream 502429 13885155 ~ 13886842 (-) True XLOC_016229
TCONS_00032016 mRNA upstream 824833 14207559 ~ 14271874 (-) False XLOC_016234
TCONS_00032017 mRNA upstream 825432 14208158 ~ 14272083 (-) False XLOC_016234
TCONS_00032019 mRNA upstream 893913 14276639 ~ 14390627 (-) False XLOC_016235
TCONS_00031998 other downstream 121302 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00031991 other downstream 1151560 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031983 other downstream 1713176 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031958 other downstream 2470920 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031915 other downstream 3628668 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00032033 other upstream 1611667 14994393 ~ 14994490 (-) True XLOC_016250
TCONS_00032037 other upstream 1645920 15028646 ~ 15033121 (-) True XLOC_016251
TCONS_00032040 other upstream 1719377 15102103 ~ 15107716 (-) True XLOC_016253
TCONS_00032063 other upstream 3126098 16508824 ~ 16512422 (-) True XLOC_016264
TCONS_00032069 other upstream 3233214 16615940 ~ 16616055 (-) True XLOC_016267

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_02074726_02085013.mRNA True 1574 mRNA 0.43 4 CI01000004 2074485 ~ 2085104 (-)