RNA id: XM_021605859.2


Basic Information

Item Value
RNA id XM_021605859.2
length 3578
RNA type mRNA
GC content 0.41
exon number 8
gene id lmx1bb
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 25704174 ~ 25768796 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAATACCACAAAGCATGTGAACGTCGAAAGCGTAATGGTCCAATACTTAATTTCAAAGCTTTTACTAACCTATATGAagacaagaagaagaaaaaagaagaaaaagaagaaacatcaacaacaacaacaaaaaacaatacaaacaccAACTATAGGCCTACTAGGATACTTATACTACTACTCTAATAATTACAATAATTtatgtattattataattattataatatcaATTGTAATAAAGAAGTATTATCTTAGCAATGGTTCACTTTGAACTAAATTAAGATAAATTGCAAATGGCCATAGCAAGTTAAACTTCTTGATATACCTTTAGATTACAATGTACAGTATTTGAGTTGTTGTACACTGACTGCATTTTTGTTTCTCTCACCATGTTGTGTCTATAGCTTTGTTCAAAGTGATAGGCGAAACATAGTTCAACTTTTAGAGCGCACCAAATGTGAGCACCAATAGCATCTCAATGTCAGTAAATAGTCTAAAAAAGTGACGCTGCCCcagaggggtgggaggaggatCCATTCGCTTCAATCTCGTAATGCAGACTTTTCAAGCGGCAGGGATCCGTCCAAGGGGCATAGCATTTTAAGAGTTACCATTGGAACATTTCACTCATATTTTCTGGAGTTacaattgttgttgttttagtaGTTTTTCTTGGTAGAAACATACGTCTCGAGCGGATAAGCTTCATCCTCCATAGAATTCTCTTCTGGTCACGCGCGGGTGCAAACAAGAAGATAGCCTACAGTATACATATTCAGTCCAAATTAACAGGTGACTGCTCCAAATAGTGTTTGTCAGGTTTATTGTCGCTTCTCATCCGATTCTGTGACATACGACGATTCTGCTTAGGATAGTTCTACAAACAGTGACGTCTGTCTTAACATTGGGAcgacttttttttttattattatttttttaagttaGCGATCTGGGAAAACGcattgtttgtgtatgtgtgtgcaagtAGCCTCAGCAAATATTGTGGCATTTAGCTAGTATTTGAAGCGAAGAAAAGTCTGACAGTACATTGTTATGGATATTGCAACAGGTCCGGAGTCACTGGAACGCTGTTTCTTGAAGAGAAACCAATCCAAGTACCCAAGGATGTTAGACGGTATAAAGACTGAAGATCATCCCCATCGTCAAGCTACCCTTGGAGTCGTGCTTGGGACGGAATGCCATCACCAATCTGTATGTGAAGGATGCCAGCGTCCAATATCTGACAGGTTTCTGATGAGAGTCAACGATTCCTCGTGGCATGAGGAGTGTCTGCAGTGCGCTGTGTGTCAACAACCTCTAACTACCAGTTGTTATTTCCGAGATAGGAAACTGTACTGCAAACATGACTACCAACAATTGTTTGCCACCAAGTGCAGTGGATGCCTGGAGAAGATCGCCCCCACAGAGTTTGTGATGCGTGCTCTGGAGTGTGTGTACCACTTAAACTGCttctcctgctgtgtgtgtgaccGGCAGCTGAGGAAAGGGGATGAGTTTGTCCTGAAGGAGGGCCAGCTGCTGTGTAAGAGTGACTATGAGAAGGAAAAGGACCTGCTCAGTTCTGTCAGCCCAGACGATTCTGACTCAGAGAAAAGTGACGATGACGATGTGGATATCAAGCAGGAGAAAGGCACGGGAGGCCAGGGGAAGGGAGATGATGGGAAAGACCCCAGGAGGCCCAAGCGGCCACGGACCATTCTGACCACTCAGCAGAGACGAGCTTTCAAAGCCTCCTTCGAGGTGTCCTCCAAACCCTGCAGAAAGGTGAGGGAGACTCTGGCTGCTGAGACAGGTCTCAGTGTTCGTGTGGTACAGGTGTGGTTTCAAAACCAGAGAGCCAAGATGAAGAAGCTGGCAAGaagacagcagcagcaacaggaaCAACAGAATTCTCAACGGCTTGGCCAAGAGGTGATGTCCAATCGGATGGAGGGCATGATGAACTCCTTCACGCCACTGGCCCCGCCCCAGCAGCAGCTGGTTGCCATGGATCAGAACGGCTACAGTACGGACCCCTTCCAGCAGGGCCTCACCCCCCCACAGATGCCCGGAGACCACATGAACCCATATGGTAATGACTCAATTTTCCACGATATAGACAGCGACACATCTTTAACCAGCCTCAGTGACTGCTTCATGGCATCTTCGGAAATGAATATGCAAGCACGTGTGGGACCCATTGACCGACTCTATTCCATGCAGAACTCTTACTTTGCATCATGAAAGAGCCACATACAGAAATGATGTTATGTAATATAGCAGATCATCCACAAAATCTGCTTCTCAACTTCCTCAACTGCCTCACATCAAGGAGTTTCCACACTGCTATGGACAAGACATAAGCAACAACCTCTTCCAGTGACTCCTGGATCATTTGCAGACAAcggactcaaagagagagaaactagtTTCTCAACCGTGAAGATTCCCTGGGATGATTCTATTTTCTCCTCCTTTCTAGAGATTATTTGTAGCATATTTGTATAGTACTGTCACAGAAGTAGCACATCTTTCTTTGTCCACCTAAAGAAATTTCATTGAGCCACTGATTTAAGAAAAACTCTTACCAAATACTACAAGCCTACCAGTTCTCATAATGCATGACTCCATAGTTAATCGTATGACCATAAAAGTGAAAAACCCTTAAAAAAAATCATGTGAATTGTTGAGATGTCAGAATGTGGTTTTGAACTCCATGTCCTCGTTATAATGCGTTCAGCCTGATCACATGGATAGTTTTAGCCCTAAAGAGACGATATGGTGTTCATAGTAAATAGACAGTGTGTTCACAAGAGAGGATGTGAGTGTGTATTTGTCCGGGCGTCGACATATACACctttgtgtagtgtagtgtctgtttaGTGTAAATACATTCCCAAACAGATTGGTTGTGCATGTACAAATGGAAAGCGTTCTATTTATTTAACTACAACATGCTCTTGAAGGTACTTATGAATCTGAAAAGCTTTATTTAAAAGGATAATATTTTGTTATGTAACTAATgagtaccagtggaggctgctgaggggaggaagggtCATactaatgactggaatggagtcaatggaatggtatcaaaaatATAGGGTATCAAtgggtttgataccattccattcactcccttccagccattacaatccattccagccattattagcagcctccactggtgagTACATGATTATTAAAATTAATTTGTATGCCATTTAATTATGAACCAACCATAACCCTTTTTTTCAGCCAAGCTGTAAATGAGCAAAATTGTGCTATTTATTTTGTACAGATTTGAGACCATGTCAAATGTACATTTTTAATGTTAAGAAATTGCTAAATTACCAAAGTCAATTGGTTCATTGAATAAACAATATTTCCATCTCCTGATAATAGCTTAATTCATGCTACACTAAAACATTGTTGTACTCAAAAGACTAAACCTCATAATAGCAAATTCAAAATTGTATTGCGTATTTTCATTGTATAGTAATAGTTAAAGCGACTGAACTCaaggtttattttttatttttattaaactcTGTGAATGGATGAAATTTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU556467 lncRNA downstream 19490 25684452 ~ 25684684 (-) True G489646
TU556451 lncRNA downstream 40362 25663141 ~ 25663812 (-) True G489630
TU556443 lncRNA downstream 60999 25641539 ~ 25643175 (-) True G489622
TU556407 lncRNA downstream 96695 25596797 ~ 25607479 (-) True G489590
TU556335 lncRNA downstream 184261 25519709 ~ 25519913 (-) True G489527
TU556527 lncRNA upstream 2345 25771137 ~ 25771355 (-) True G489706
TU556542 lncRNA upstream 16807 25785599 ~ 25785942 (-) True G489721
TU556554 lncRNA upstream 27032 25795824 ~ 25796123 (-) True G489731
TU556575 lncRNA upstream 40033 25808825 ~ 25809089 (-) True G489752
TU556587 lncRNA upstream 45000 25813792 ~ 25814205 (-) True G489764
XM_021605858.2 mRNA downstream 43925 25643232 ~ 25660249 (-) True LOC110525601
XR_002473781.2 mRNA downstream 252962 25449019 ~ 25451212 (-) False LOC110525597
XM_036979719.1 mRNA downstream 328692 25172861 ~ 25375482 (-) False LOC110525591
XM_021605839.2 mRNA downstream 328694 25172861 ~ 25375480 (-) False LOC110525591
XM_021605837.2 mRNA downstream 786322 24911627 ~ 24917852 (-) True LOC110525589
XM_021605870.2 mRNA upstream 210162 25978954 ~ 26067630 (-) False pbx3b
XM_021605862.2 mRNA upstream 210162 25978954 ~ 26067631 (-) False pbx3b
XM_021605864.2 mRNA upstream 210162 25978954 ~ 26067631 (-) False pbx3b
XM_021605868.2 mRNA upstream 210162 25978954 ~ 26067631 (-) False pbx3b
XM_021605869.2 mRNA upstream 210162 25978954 ~ 26067631 (-) False pbx3b
TU556319 other downstream 206685 25496963 ~ 25497489 (-) True G489511
TU555826 other downstream 597604 25106205 ~ 25106570 (-) True G489038
TU555288 other downstream 994754 24706571 ~ 24709420 (-) False LOC110525585
TU555289 other downstream 1029273 24660897 ~ 24674901 (-) False LOC110525585
TU555138 other downstream 1350351 24353533 ~ 24353823 (-) True G488386
TU557298 other upstream 510915 26279707 ~ 26283169 (-) True LOC110525606
TU557449 other upstream 686940 26455732 ~ 26457841 (-) True tmem230b
TU557799 other upstream 778430 26547222 ~ 26551627 (-) True LOC110525619
TU558306 other upstream 1056075 26824867 ~ 26867158 (-) True G491291
TU558571 other upstream 1447815 27216607 ~ 27244193 (-) True G491539

Expression Profile