RNA id: XM_021605883.2


Basic Information

Item Value
RNA id XM_021605883.2
length 7817
RNA type mRNA
GC content 0.50
exon number 27
gene id LOC110525604
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 26234552 ~ 26264035 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGCGCTGACCGCGTCCAAGAGCATTCTATGCCCAGTGCGCATGCGGGTGGAGCGCGTCTTCTCATTAtgacagctaacgttagcaagcgcTGTAACCCGAAAGAGGGAGTTCAGAAACGCTGTGGGATAGACGTATTGAGCTAACGAATTATTGCTTACTGCAATTATTTCACGGTTATTGGGAATCCGTAAACAACTGTTATACTAATCAACTTGTTTGTCCTTTGCCTTTCTGTGTGAGCTGGTAAGGATGAAGCCAGACATCCACACTCTGGCCCATCACCTGAAGCAGGAGCGGCTGTATGTGGCCTCAGAGAAGCAGCTGATCCAGCGGCTCAATGGGGACGTGCTGAAGACTGCTGAGAGGCTGTACCGTGCTGCCTGGATCACCAAGCAGCAGAGGATCAACCTCGACCGGCTCATCCTCACCAGTGCTGAGGCTTCCCCGGCCGAATGCTGCCAGCATGCCAAAGTGCTGGAGGACACACAGTTCCTGGATGGTTACAAGACTCTGGGATTCCAGGAGAGCATCTATGGGGAGTTCCTGGGCCGGGTGCGGGAGAATCCACGGCTGGtggcctcctgcctggtggctGGGGAGAGGCTGAACCAGGAGCACACACAGGGGGTCATTTACACTGTCTTCACCTCACTCTATGGCAACTGTATCATGCAGGAGGATGAGAGCTACCTGTTGCAGGTCCTGCGATACTTGGTGGAGTTTGAGCTGAAGGAGAGCGACAACCCTCGGCGGCTGCTGCGGCGAGGAACGTGTGCCTTCAGCATCCTCTTCAAGCTCTTCTCTGAGGGGCTGTACTCCGCCAAGCTCTTCCTCACCGCCACCCTCCATGAGCCCATCATGCAGCTGCTGGTGGAGGACGAGGACCACCTGGAGACGGACCCCTCCAAGGTGACAGAGCGCTTCACGCCGGCGCAGCAGGAGCGCCTGTTTGGGGAGAAGGGCTCGGAGGGCTACAGGCAGAAGGTGGCGGCTGCTGTGGAGGCCAATGAGGCCAAGCTGGTGACCCTGGTCAACAAGTTCATCGGCTACCTGAAGCAGAACACCTACTGCTTCCCCCACAACCTGCGCTGGATTGTGTCTCAGATGTACAAGACTCTGTCGTGTGTGGAGAGGCTGGAGGTGGGCGAGGTGCGGACCATGTGCACGGACCTGCTGCTCACCTGCTTCATCTGCCCAGCCATAGTCAACCCTGAGCAGTACGGCATCATCTCAGACGCCCCTATCAACGAGGTGGCTCGCTTCAACCTCATGCAGGTAGGGCAGCTTCTTCAACAGTTGGCAATGGCTGACGGTGATGGCGACCCCAGGAGAAAAAACAGTTTGGCCAAGTTCGATAAGAGCTGCGTATCTGCCTTCCTGGATGTGGTAATCGGAGGGAGAGCTGTGGAGACGCCGCCCATGTCCTCCATGAACCTACTTGAAGGCCTCAGCAGGACTGTGGCGTACATGACACACAGTCAGCTGCTCTGCCTGGTGGACTTTGTACGGAGTGTGATGGCAGGGGACTACCTCCGGGAGGAGGAGCACATACTCCTGGAGACCCTAATGGCCAACGTGCCCCAGTCCCGCACAGTGAAGAGCAACAGTCTGGAGCTCACCCCCTCCAACACCCCCCAGCTTTCCCCAACCACCACCCCTGCCAACAAGAAGAACAGGAACTTAGCAGCCTCCCGCAGTCGCAGCCGTACTGAGCTGGCCCAGCAGGGGGAAGCAGAGGCCAGCTCCATGGAATCCCTGCAGGAGGTGATGCCAGAAGAGGTGCTGGTGATCTCACTCGGAAGCAGCCCGCAGACCATCCCCGGCATGATGTCAGAGAATGAGGTGTTGACCGTGCAGCAGACTGATGGAGCACAAGGGTACACTCCTGCAGACGACACCAAGCACCATTGCAAACCAGACAAAACCCTGCGTTTCTCCCTCTGTAGTGACAACCTGGAGGGCATCTCAGAGGGTCCGTCCAACCGGTCTAACTCTGTGTCGTCTCTGGACCTGGAGGGAGAGTCTGTGTCAGAGCTGGGAGCTGGGCCATCAGGGAGCAATGGGGTGGAGGCTCTACAACTGCTGGAGCATGAACATGCCACCACTCAGGACAACCTGGATGACAAACTGAGGAAGTTTGAGATACGAGACATGATGGGCCTGACGGATGACCGGGATATCTCTGAGACTGTGAGTGAGACCTGGAGCACAGACGTGCTGGGCAGCGACTTTGACCCCAACATGGACGAAGATAGACTGCAGGAAATAGCTGGGGCGGCTGTAGAGAACATGCTGGGCAGCCTGCTGTGTCTACCAGGCTCTGGTTCAGTGCTGCTAGACCCATATGGATCCACCATCTCCGAGACCACCAGCGAGGCCTGGAGTGTGGAGGTCCTGCCCAGCGACTCAGAAGCCCCAGACCTGAAGCAGGAGGAGCGTCTACAGGAGCTAGAGAGCTGCTCCGGGGTGGGCAGCACCTCCGATGACACAGAGGTCAGAGAGGTCAGCTCTCGGCCCAGCACCCCAGGGCTCAGCGTTGTCTCAGCGACATCAGAAGACATCCCCAACAAGACAGAGGACCTGCGGTCAGAGTGCAGCTCGGACTTTGGGGGGAAGGACTCTGTGACCAGTCCAGATGGGGAGGAGTCATCCCACGGAGCACATCACAGTTTGGCCTCTCCGCCCTCTCAGGCTGACTCCTTACTGGCCATGTTTGATCCCCTCTCTTCCGGCGAAGATTCCTCCACTGGTACCATTGTGAGGCCCAAGGTGCACTACGCCAGGCCCCTTCATCCTCCCCCTGACCCTCCCATCCCAGAGACCTGTGCCCTGGGCCAGGAGCCCCGCTACTCCCTGTTCACGCCCCACTGCCTGGCCCAAGCCGAGCTGGAGCACACCAAGCAGCGCCACTCCTACACAGACAGGCTGGTACGCAGCCGCAGCTCTGACATTGTGTGCCCAGGCCGCCGACCCACCAGCGACCCGGGCCTGAACCGCAGGGCTGCAGCCGAGGAGCGGGATCATGCCGGGGCCTTCTTTATGGGGCCGTTCTCGTCTCCTAGCAAGGACTCCCTGAAAGGGGAGGTTGAGGAGAGAAAGGACAGTGATGAGGAAAAGTCTGATCGCAACAGACCGTGGTGGAAGAAACGCTTTCAGTCAGCCATTCCCAAAGCTCCGATAGCAGCCTTACGGAAAAGGGACAAGCAGGAGAAAGACAATATGGGCCATGAACGTGTCCCACAAGaCGACCCTCTGTCCAGGAACTCCCAGGCCCAGGCAGCAGAAGACATCCTTGACAAGTACAGGAACATCAAGAGGACCAGTCCCAGTGAAGGAGCCACTGCTGCAGCCTACGACGCCACAGAGTTGTGTGGAGAGGAGTGTGTGCACAACTCCCCCAGAGACGAAGCTCTGCAGAACATGTCCACAGACGACCTGCCAGactcagccagccagacagcccaGCAACACGATTCCAACAAGTTCTCATTCAGTGATGCAAAGAAGAAGTTGAGGCTGGCCTTGTGTTCAGCAGAGTCTGTGGCCTTCCCTCTCATGGCTCCTGCCACCACACGCAATGGGCTGCCTGACCACACAGACTTTGAAGACAACGAGATCGTGTGCTTCCTGAAGGTCCAGCTGGCGGAGGCCATCAACCTGCAGGATAAGAACCAGATGGCCCAGATCCAGGAGACCACGCGCTGCGTCAGCCGCTTCGACGCACGCACCTGCAAGAAGCTGCTGGCTGCCATTGCTGAGGATTACAGGAAGCGGGCACCCTACATAGCTTATCTGACGCGGTGTCGGCAGGGTCTGCAGACATCCCATGCCCACCTGGAGAGGCTGCTGCAGAGGGTGCTGAGGGACAAGGAGGTAGCTAACCGCTACTTCACCACAGTCTGTGTTCGCCTCCTACTGGAACACATGGAGGCGAAGTCCCTGGACTTCATCAAAGccttccAGGGGTGCACAGCGTCAGACGACAAGACGGCGGCGGTGGAGGACTTCCTGCGCTACCTGTACGGGGCCATGGCCCATGATGCCATCTGGCAGTACGCCAGCGAGGATCAGCTGCAGGATGCCCAGATGGCCATCGAGCGCAGCGTCATGAACCGCATCTTCAAGCTGGCCTTCTACCCCAACCAGGACGGGGACATCCTGAGAGACCAGCTTCTTCAGGAACACATAGCACGTCTCTCAAAAGTGGTGACAGCGAATCACAAAGCTCTTCAAATCCCAGAGGTGTATGCGAGGGAGGCTCCCTGGCCGTCTGCCCAGTCAGAGATCCGGACCATCAGTGCCTACAAGACCCCTCGGGACAAAGTGCAATGTATTTTACGCATGTGTTCCACCATCATGAATCTCCTGAGTCTGGCCAACGAGGACTCTGTCCCTGGAGCTGACGATTTTGTCCCTGTGCTCGTCTTTGTCCTGATAAAGGCAAACCCGCCTTGCCTGCTGTCCACTATTCAGTACATCAATAATTTCTACGCCAGCCGGCTGAGTGGGGAGGAGTGCTATTGGTGGATGCAGTTCACCGCGGCAGTGGAATTCATTAAGACCATCGACGATCGCAAGTGAAGCAGAACGAACAGCCACCTGTATGGGCAGACCGTGGTGAAGGAGACTGGACTGGGAGACTTCCCAACcaactgctccctctctctctgctccccacaGCCACCAGGACCACACCCTGTCTGCTGTCTGTTTGTATAGCTGTACATAGTCAGAGACTGAGAGTATATATGATTATTAAGCTGGCAAAATCCAGGTTTTACAGTAGAGAAAAAGGCCTTGGAAAAATGGCAGATGTTAACTTTGAACTTAAACTAATTAGGTGTTTTTTCCTTTCATCTTTTGGGTCTCCTTAGTCATGGTGAGGTGTGGGGGTCTGTATCCAAAGTGTTCTATCTTAAGTTATGATTCTGATGTTAAATTTACTGATAAAGCTTCTAATCAGATGAAAGGGAACCATGTTTCCTAGAGATGATCTCAGATAAATGTAGTGGAAGGGGATTTCAAGTAGGTGATGGAAGTTCTTCCTTGTTAAATTGTGCAATCTTTCCCCTGAAATACTTATGCTTATGCATTGTATCCTGGGGAATCACAAAACTCAATAGATACTGAGTATTCGTGACTCAATACATTATAAGATCAATCCAATATACTAATGTTTCTATTTTTAACGCTACCACATTGATAATAGGGTAACTTTTTTTTCATCAAATGTAAACAAATGTAGTCATTTCAGTTCATCCTTTCCTAAATACTTATTTTTATGTGGCAATTTTGACACAAGGGACCACATATTTATATatgaaataaaatgtatgtatttatttcattCTATTTAATGCttttaaacaaaaaacaaaaaacaaaaaaatatatagtgtTAGGACAAGGAGCAGTGTTGTCCTTGGACTGAAAAGCCCCCAGGATGAGATATCAGTAGCACTGCTTATTTGGAAATACTGAAAATGAGTGCCTTGAGGGGCGTTTTGTGTAAGTCTATTCATTTTCTATATATTCTTGAGTATGAGGGTTCTGCTCTTTATTTTCCATAAACGATTGGCATTACTCTCCCACCCCATTATCACCAATGAGCCCCACAGCCTCTTTTTAAGAAACCTCTGTCCAACCTCTATGCTGGGAGTGACCTCTGAGGAGGACAGGCAGTGTGTGGAGCACCGCTGGTTGTTTCAGTTAATTCCCTTTGCACTCATTTCCTTCCCATTACCGTTATGCCCTTGAATATCCAAGATTCTACCTCAGTTAGAACCAATGAACCTGCAATTTATTTTTGGGCACAAGTCTTTAACATTGGTTGGATAGAAAGAATAATGGAACAGGTATTCACTGTTCAAGGGGCTTCTATAGCATCTTCCCCTGCTACAATGAAGCATACTAGTatgtaatatttttattttaggcGGGTCAAAGTAACCTTTAGTATTCAAGGTAGTAAAGCATTTCCAAGCGAATAAAGTTAGGTATTTCTGTAGTTGAATGCATGTATGTTTCAGCATAgagcagacagactagtgattGGATTAGCTCTACCTCACATGATCAAGAAAGGGACTCTTCACGCATATGCTCGCGtggattattttatttattatacaATTTTAGAGCGCAGGGATATTCCAGTTTCATAATTTTCTTCCACTTACAGGCATGTTGCTCCTCTGCCTGTTCTGTGTCAGGGGCTCCCGAGTGtcagtggtctaaagcactgcatctcagtgctagaggtgtcactacagaccctggtccaattccaggctgtatcacatccggccatgattgggagtcccatagggcggcgcacaattggcctagcgttgttaGGGTGTGGCCGGTGTAGgccggcattgtaaataagaatttgttcttaactgacgtgcctagttaaataaaggtttaaaaaaaaagaagggggaaaaaaactttAAAAATCACTTGCAGCCAAAGTCATCAAAACTCAAACTCCTGTTCTGTTTTCATTGCAGCTACAAAAGAAGGAACACACTGTTTGCGCGCTTAGTATTGTGCCAAGTGTTTTGTCTTATTTGATGTGTTAAATGACTGCTTTCATATCACATGAATAGACAGCACAACAAAAAGAACAAACAATCAGAATACTGACATGTTACTGACCGCTGGAAAAAGGCTGTGATGGGCGTAAGAGGGCGTATGTTGAATGTGTGAGAGGTTGGTCTGTTAAACGAGTGCATCTGCTCCGTCTCCTCTTGCACTGTCTTATAGGATGGTCTTcttactgtagctacagtactaCACGAGCAGGTAGTCCTTGCTGGTAAAAAAAATCTCTATAAATACTTCTATTTTCCAACTCAGGCCAGGTATGAAAGGGTTGAGAAGAATGAGGCTTGGTTTTCTTTTGAGTCTGTGACCCTGATGTCATTTATTTTTAAAAGTTCAGAGCTAAATTACTCTTGAGTTTTTGTACGGGGTTAGCGACGCTTGAGCCCTACATTCTACAAGCagaacatttgacatgttttctACTTCCCTGCTCTTTAGTAATGAGTTGCACTCATTTGAACTAATGCCTCTGACATTAAAATACTCTAATTGAGGTGATTATATGGGTAGTTTAGCTAGGTCTTACTGTTAGTCATAAGGACACACATTTATAAGCAATCTCTAAAGGTGGGATATGTTTGTTTTCTCCCCATTCCCGGACTTCTCTTCCTGGTTTTTGAGGAATATGTGTGTACAGCATCTACCGttttaaatacacctctgctaaATAGATGATACTGTTGTCTAACCTGTTTGAAAACACACCATGTACTATGTCACCAAATGCAGATAGACTGTATCTATAAGTGTTTGTGGTGTCACTTTAgaggtactgtacagtacagaccaAATGTGAAACAATCTGGACCTGAATAGTGTTTCAATGTTCCCTTATACATATCAGTGACTCTTTTTAAtagctaaaaaaaaataatacaaccaGCCTTAGTGTCTGACCTGAGTGATACTGTTCatacacagtgacagaatacctcTTATTGTGAAGTTCAAGTACACATCCTAACATTGAGAAGAAGTCTGTACTATAGCCTGATTTAGCATTGATTGTACAAGTAGACCGTTGGTGGACAAAGAGACACTTGTCTATGAAATCTGGTCTTCAAAGCTTAGGCAGAATAATACATTTGACATTTGTAAGCTTGCACAATTATGACATATGCAGAGGGGTAGGCGATCTGTCTTTAATGTGATTAATGTATTATATACTTCTTAAACTATTAAACAGTCATTTTTCTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU557299 lncRNA downstream 10212 26223969 ~ 26224340 (-) True G490431
TU556979 lncRNA downstream 152816 26081305 ~ 26081736 (-) True G490145
TU556806 lncRNA downstream 265920 25968402 ~ 25968632 (-) True G489983
TU556787 lncRNA downstream 278387 25955946 ~ 25956165 (-) True G489964
TU556736 lncRNA downstream 315188 25919106 ~ 25919364 (-) True G489913
TU557375 lncRNA upstream 91624 26355414 ~ 26355872 (-) True G490506
TU557380 lncRNA upstream 101415 26365205 ~ 26365445 (-) True G490511
TU557383 lncRNA upstream 105467 26369257 ~ 26370378 (-) True G490513
TU557387 lncRNA upstream 125990 26389780 ~ 26390145 (-) True G490517
TU557495 lncRNA upstream 202212 26466002 ~ 26466279 (-) True G490616
XM_021605871.2 mRNA downstream 166919 25978954 ~ 26067633 (-) True pbx3b
XM_021605861.2 mRNA downstream 166920 25978954 ~ 26067632 (-) False pbx3b
XM_021605863.2 mRNA downstream 166920 25978954 ~ 26067632 (-) False pbx3b
XM_021605872.2 mRNA downstream 166920 25978954 ~ 26067632 (-) False pbx3b
XM_021605862.2 mRNA downstream 166921 25978954 ~ 26067631 (-) False pbx3b
XM_021605884.2 mRNA upstream 7969 26271759 ~ 26283168 (-) False LOC110525606
XM_021605886.2 mRNA upstream 29898 26293688 ~ 26317315 (-) False LOC110525607
XM_021605885.2 mRNA upstream 29898 26293688 ~ 26317316 (-) True LOC110525607
XR_002473782.2 mRNA upstream 66289 26330079 ~ 26334833 (-) True LOC110525608
XM_021605889.2 mRNA upstream 119170 26382960 ~ 26391291 (-) False LOC110525611
TU556319 other downstream 737063 25496963 ~ 25497489 (-) True G489511
TU555826 other downstream 1127982 25106205 ~ 25106570 (-) True G489038
TU555288 other downstream 1525132 24706571 ~ 24709420 (-) False LOC110525585
TU555289 other downstream 1559651 24660897 ~ 24674901 (-) False LOC110525585
TU555138 other downstream 1880729 24353533 ~ 24353823 (-) True G488386
TU557298 other upstream 15917 26279707 ~ 26283169 (-) True LOC110525606
TU557449 other upstream 191942 26455732 ~ 26457841 (-) True tmem230b
TU557799 other upstream 283432 26547222 ~ 26551627 (-) True LOC110525619
TU558306 other upstream 561077 26824867 ~ 26867158 (-) True G491291
TU558571 other upstream 952817 27216607 ~ 27244193 (-) True G491539

Expression Profile