RNA id: XM_036979736.1


Basic Information

Item Value
RNA id XM_036979736.1
length 8418
RNA type mRNA
GC content 0.49
exon number 22
gene id igsf9b
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 26404186 ~ 26455420 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAAAGCTCACAGACATTACATGTAGTTCTTTGAGGGACAACACTGTTGCATTTGTTCAAAGTAAAACTATCCCACTCCCATATTGATTGGCAAACGTGTGGTGAAGGAACTTTATTGTAACTTTTGTGACAAAGTAGACTATTTTCTCCCAGTAATAACGGCTTTATTAATAATTGAATATACACGGAAAGACACATGGAGGGGAACAAAAGCTTAACGCAAGGACTTTTGGataacattttggtcatttaaaaaaatgtagaactggTGGATATGGAACATTACATTGCCATTGTCTAAGGACGTGTTCCGTTGCATAACGTTTGTCTTTTGTCAGGGACCCCGACACGTCCTCTATACGTTGGACTTTCCCACGAAAAGGCGCTTTTGTCTGGAGCGCTCAAACTGAGTGCATGTGGTAGGGAGGAGAAGAAAGATACGACGAAGGGACGAAACCGCGAGAAACGTAGTAGATGAATAGACGACTGTATTCTGTCTACACACTCCGTCATTGCAGTGGGGAACTGGCGGGCATACATCATTTTGGGGTATTTTGAGCAACGTATAATTTAAATGCGCTCTATGGATTCGGATTGTATTTTTTCTACTGCTCCTTTTTACAACACTTTGGGTAACTTTGGACAAAGCAACACGAAGAAGAGCAATATAAAATAATGCTCGGAAACTTTTAAACGATTCTAAACCAATCTAGGTACTTCTTAGGTTTTTCCTCTATCTTTATATGGGATTTAAAACCTGAGAATTGAATGAGATAGTGCTACAGCTAAATCTACTAGGAGCTTTTCCTACAACTTCCCTGGTTATGTTTAACAACTATCATGTGGCGCGCGTGAGACAGTCTGCCACGCTTTTATAAACTATGCGACCACCTGCCTTTGTCGAACACCTGCATTTTAAAGGCAACCTTATCAAACTTGAGAGTAACTAATGAATGCCCAAATACGTCAACCTGCATGCTGAAAAAAAGCAAAGGACCCGATGGACTGATTTGATTCTGGTCAAGTCAGAGAAGTGCCTCAAGCAAGGTTGGGAGATGTGTGAAGGAGTGTGAGGGACGGCCATGGGATTGGAGAGACTGTGGCTTCTGGGTGTCACCACTGTTGTTGCCCTCTGTCTGCTGCGTACGTCCCAGGGTGTGGAGGCGGTGGTACGAGCCAGGGTTGGGGGGACTGCAGAGCTAGGTTGCAGTCTTAACCCCCTTTCTACTGGAGTAACCACCCCAAACTTGTTCCCACTGCACGTGGTGGAGTGGGTTCGTCTGGGTTACAATGTTCCCATCCTCATCAAATTCGGAGTGTACGCACCACGTGTGCATCCCAACTACAAGGGCCGTGTGTCTCTGACCCGGGGGGCCTCGCTGCTGGTGGAGGGGCTGAGCCTGGAGGACGAGGGCTGGTTTGAGTGTCGCATCCTGCTCCTGGACTGCACCACAGACGAGTTCCGCAACGGCACCTGGACCTTCCTCTCCATCACAGCCCCACCTGTATTTATCAAGACTCCGCCTACCTTTGTGGAAGTCCTGCTAGGGGACTCCCTGACCCTCAGCTGTGGTGCCCATGGTAACCCTCGACCAACTGTTATCTGGCATAAAGATGAGGCCCCAATTGAGAATGGTGAAAACATGGTGgtGCTCAATGGCACCTTATCTTTGGCCCCCGTcaccagagagacatcaggaatGTATAAATGTCATGTGTCCAACTCGGAGGGGAATCTGACCCATACTACCCAGCTGCAGGTCAAAGGTCCTCCACTCATCATCATCGCCCCAGAGGACACCACCCTCAACATATCCCAGGATGCAGTTCTGCAGTGCCAAGCTGAGGCCTATCCCTCCAACCTCACCTATGAGTGGTGGAAACAGGGACAGAATGTCTACCATATCGACTATCTCAAGACCCGTGTGAAGATCTTAGTGGACGGAACACTCCTCATCCCTAGTCTTGTCCCAGAGGACACTGGGATTTACACCTGTACACCAACCAATGGGTTGATGACCCCACCCTCTGCCTCAGCACACCTCAAAGTCAAACACCCTGCTCGGGTGGGCCGGATGCCCAGGGAAACGTATCTACCTACGGGCATGAGGGGAGCCATCTTCTGCCCAGTCCAGGCTGAGCCCCCCATGCTCTTTGTCAACTGGACCAAAGATGGGAACAATTTAAACCTTGACAATGTCCCTGGCTGGAAGGTGAACTCTGAGGGCTCAGTGTTTATAGCCACAGCCAATGACGATGCAGTGGGCATGTACACCTGTACTGCCTATAACAGCTATGGAACCATGGGCCAGTCTGAACCCACTAAGGTTATCCTGCAGGATCCGCCCTCATTCTCTGTGTCCCCTCGTGCTGAGTACCTGCAGGAGGTGGGCCGGGAGCTAGTCATCCCATGTGAGGCAGATGGAGACCCCTCTCCCAATATCACCTGGAGCAAGGTTGGTCCCACTCCTCGCTCCACATACACTGTGCTGTCCAATGGCTCCCTCCTCCTGAAGCCTCTCAGGAAAGACCACCAGGGGGGCTGGGAGTGCCTTGCCACCAACCGCGTGGCCACTGTCAACACTGGCACtgtggtcttggttctggGCACCAGCCCTCATGCTGCCTCATTCGTGTCAGTAAGCACCGGGATGAACCAAGCCAATGTGTCCTGGGAACCTGGATTTGATGGAGGATACACCCAGAAGTTTACTATCTGGGTTAAGCAGGCTTCCAGAGGGAAACATGAGTGGGCATCTCTCCCAGTGCCCACGTCCAAGTTCCACCTTTTGGTGACAGGGCTGCTGGCTGGCACCAGCTACCAGTTCAGTGTCCTGCCTCAGAACAAACTGGGCTCTGGGCCCTTCAGTGAAATCACCTCTGTCAGGACGCAGGCCCTACCAACAGATCCACCCACAGTGGTCACCACTCTACCAACTATCGACCCTCCCTCGTtcctgtcagccaatcagacgGTGCTTGGGATTGTTCTACAGTGGTATGCTCCTGAGTCTCAGGCCACATCCCTCACTGGGTATGTCCTCCAGGCTCGGAGGAACAGAGGCCAATGGGTCATTCTCAACAGCGCTGTGAAGGCCAACCAGAGTGAACTACTCGTACAAGGATTACTGAGGGACTGCATTTATGATCTGAGATTGGTGTCTCGCAGTAACAAGCTACTGAGTGAGCCCAGTGAGTCTGTCAATGTGAACACCACAGGCATGGAGATGTACCCTGTCTGGCCAGGCTTCCTGGAGTTTGTCCCTGAGCCCTTATTGGCTGGTGTGTTGGGTGGAGTGTGTTTCCTGTTCCTGGCAATCATACTCTCCTTGGTGACAGTCTGTGTTATGAGTCACAGAAGAGCCCATCTTcgcaggaagaggagagatgATCTCCCCTCTGCTTTCCAGAAGAGTCCTTCTCCAGAagCTCGCTCGCCTTCTGACAGCCCTGACAGCGTTCTGAAGATAAAGCTGTGTCCTCCCCTGTCTTTCTTCCCCAACTCCTCATCTTCCCAGTCTGACCGTTCCTCCTTTGATAAAGGCAGCCGTGGAGAGTACCAGGACCAGCGTAGTCAGCTCCTGTCCagctcctctcccccaccccactACACCATCTTTGAGAGCCACCTGGGGGGTAATGccccctcaccctctccgctGGAGTCCATCTCAAGAGGCCCAGATGGACGTTTCATTGTCCAGCCCCTGCTAGAGGGGTCTACTCTTTCCAACATGAAGAAAAACGTGAAAACAGTCTTCCTACAAACCAAAACCAATGGGGGAGATAGCGGCACAGGGAGCAATCAGACATCTTTCAAAGACTCTCCAAAGTCCAGCAGTCTGAGctctgagaggggagagagaaaggactcCTACCTTACAGTGGAAGTTACAGACCTCAGCAAGCCCCCTGCTTCCCCGGGTAGAGTGAGGGCCATGGCCAGGAACTTCTCCCGTCACGGCTGCTTCCACTCTGATGACGATCAGGGCATCTCAGAGGCTCTGCTGGAGAGAGACAGCTTCTACTCTGACAGCAGTGAGAAGAGAGCCTGTGACTCCCTGAAAAGATACCATGCTGGGCACCCAGAGGACATCTTCCCCAGCCTGGGCAGGAGAGCCAGACAGCTGGAGAGGGACAGGCATCACCAAGCAGGCTACCATACCATGGGGAGAGAGAGCCAGCTGACTAATGCCAGCACGCTGGTCTCACAGATTGATACAAGTGAACAAGAGCGGGATAACCTCAGCAAGTGTCTGCAGTTGgccaaagagagggaggagatggagagggagctgGAGAACTATACCGCCAGCCAGAGGGCAAGGGAGCGGGAGAAAGAGGAAAGGCAGCCTGAAAAGGCAGAAAGCCCTAACAGGGAACCGGATAGTTCAGGGGCTGAGGATCCTATATGGAAGCCACAAGACATTACCTTACGTCCCAAAGTCCACCGGGCTTCCGGGCAGACCCATCAGCTGTTGGACTATAGAAGGGCCTGCTACTTTGGGAACACGAGCAGCCCAATGGACCGGCTCCCTTCCTCCTACATCCAATGGGACATCAGCCCAGTCACCTCTATCAACAGCCTTATCCCAGTGCAGAGCCCCTTAGAAAGCACGACACCAAGGGTCCAACATCCTCACCAAGGTCACATTGGGTCGGCCATGAAGGACTCGCTACCTGAAGACTGCTCATGCTCCCCAGCCACTCAATGCACCACTCTATCTCTGCTCTCCCCTACATCAGAAAGCCCACCTATTGGTCAAGGAACAGCCAGAAGCAGAGCCAGGTCGAGGAATCCTGACAGAACTGTAGAAAGAGAGCAGGACACGTATCGTAGAAGCTCTATGGTTGAGGAAGGCTGGAGGGAAAAGAAGCAACCAGGGGGAGGTGCCTTAAAACTAAGATCGTCCTTTGCTTGTGGTACACAGCATCTGGAGCCAGCAGCTGAAAGTGTGAGATCTGTTTCAGCAGATCGAGTAAGGGCCACAAGTCCTGTTCAGCCTTACCCAGGCACTGCATCATATAGTCTGTCTGAGAAAACAGAGACAATAGATGGCCTTAGGGAGAGAGTAAATCAGAGTCCTTCTAGTTATTCTACTTTACCCTATGAGCTCCACAAAGCAGGGGCCAAAGGGAAAGTGATAGATGATAAGATTGGGAATGACCCTCGGAGTTCACTGTTATACCCTgagcaggagagagagtgtgGCAGGACACACTCCAGAAGGAGTGATAGGGCGCTTTTTAGTGACAGCCCCAGTCACATTTCCCACTTAACTCTTCTGGAAGAGTGTGATAGTGACCAGtcccagttctctgttgccagaGTCTCAGAGTCTTTCAAGAACAAGCAGACAAACCAGGCTCCCAAAATGTCGCCACTGCAGACAAGTGCAATTCTGGAGTATTTGAGCCTCCCGGGTTTCATTGAGATGAGTGTGGATGACTCTGGGGATGAATCTGAACTCACAGTCACTACTTGCCAAAGCGTAGAGCCACAGACAGAGACTTCTCTGGAAGGTAAGCCAGACGTGGTTCCAAAAGACTGGGCAGTTCATGTGCAGGAGAACCTTGAGACAAGTTCATGCCCAAAAAAAGTTTCTTTTTTAGAAAACAGACACTCTGTTGGTCAAGCAGGAACTTCAGAAGCAGTTGAGAAGCCAGCCTACAGATACTCTCTGCAAGTGGAAGCAAGAGATTCAAGCCACAAAGCTGGGATTCCAGACTGGTCAAAAAAACAATCACCTGGTTCAGAACTCACAGGGAGTTATCATCACAACCATGAGCAGTCGCAACCACTGATTAGTCAAAAGACCACAGCCTCAGAGAGACAACTATCGAGAAGGGGTTTAAGTCCAGTCAAGACGTTGGTTAGTGCAGATAAAAGCATGGCAGACGTTGTGTCAAAACACCCTGACACTTTTGCCGCTAAACCAGAGTCATATTCAGAACAAGCCCAAAGACTTCATTCTCAGGGCAACAGGACTAATAAAATAGCCTCTAAGATCCATCAACCCCGTGCACCATTCATGAAGAAATCTCTGAGCATCGGCCCCTGCAGAACACTCTCAGGCATGGGACAGCCTCGTCCATTTCTGAAGAAGTCAATCAGCTTAGGGTCACAGAAATGGGAGCATTTTGAAAGCCCAAGGACTTATGTCTCAGAGAAATGTTACTGGGATAAGTTCCCAAACTCAGACATCCAGGTCAAGTCCTATAGTTTAGGACGCACCCCTGCATCCTCCTTCTCCAGGCCAGGCCCCTTGTGGCAAGAAGGTGTCCCTTTTAGACGGCCGAGTGAAAGCAGCTTGGAAAGGGCTAGGTATGCTGAAAGATCCCTGGAGAGGCCTCGGTATAACAGATCCCTATCCAGTTCTTCCTATACCTACCTAAGCTCCTCCATGTACCCGCCAAGTCAACCCCCTGGCTCTGCTAGACGAGACCTATCTGATCTGCGTAGACAGGCCAGTGCTTATCCTGATGCATCCAGGTCACCTATCACATATCAGGATGCCCTGAGGTCTGTACAGCACATATATGTCCCTATGGATTTCTCAATACCCCAGTACCCACCCAGACCAGACAAGTACCCACCCAGACCAGGCATGAGGGGGGACTACCCCAGGCCGATAGAGTCCAAGAGGGGCCCACCGAGGCCCAACCTGCCCCGGATGTATAGCTGGCCCTCACCCTACCATGGTGGCCCTTTCCCACCCAGAGATGTAGACAGTCATAGACAAGCAGAGAGAAGGATGGGTAAGGGGGCAGGGGCAGAGGTGGAGATGAGCGAtaacagggaaggagggagggccaGTTATGCCAGTCAGAGCAGTGGGAGAGGTAGCGTTGGCCTCCTTCGCCAGTCCCTCTCTATCACTCCCACCCTTCTCAGCTCCCCAGAGACAACCGAGGAAagtgagacacagagacacagagccgAGATGGATCTACTTGAGCGGAGAAAGAAAAGAAGGAACACATCAGTTGATGAGAGTTATGAGTGGGATTCTACTGATGTCTGTGTGGACTCGGAAGTCCTGGAGGCAATGAAGCCACAGGCAGGGGTAAGACGGGGCAGGGGGGAGGGCAGGCATGATCGACCCCGTTCTGCGGCTGGCCtacaggaccgccacaggaatgATATTTCAAAGAAAGGAATTCAACTGGATCTTCTGTGGACAGAACAATGCCAACTGACAGACCGGATATGCTGCTTGATCATACGGCGCACATTGTACACACCAATTGCCACAGATATTGATACTTGTGTTGTGTGCCATCATTATTGACACAGAATAATACTTTGATCTGTTTGAAGCCTATTATGAGATGTTGGATATTTATATTTCTTGTGTTTTGTGTAATCAACACAACCACTATTTTGCATTTAGAGTCACCAATCCCCAAGGGAAATGGATTGTGCTTTGAGTGAGCGAGGCTTCATCTTTGTATTGCATTGTTACAGTGGGtagaaaaacgtttttttttttattactttcCCAATTACAATCTTGTCACAGGTGAATCTCCCTCATTTATGTGTTTGTaatcatcctcagttttctctgcAGAGTATTTCAGACTAACAGGAAAGTGTTGAGTGATTGCTTGTAAGAGTTAACAGTGTAAATGTGTTCATGTACTGTAGCCCTAGACAATTAAACCTTATATTTTTGGTACCATTTAAAAACTCAACGTCCTAATACTCGATCATATGAAAAAGAATTCATGCTGACATTTCTTGACTTGAATTTAAAAATATCTTATGTTGTTCATGACAGGGAAAGGTTGTGTATCATCTTTGCTTTACCTTTGTCAAAAATAAGGTAGTTCACTGTTCACAAATATGGTTAAACATATTCCCAAATTAAGCATATATTAAATTATTAGAGATCAAGAATAACAATATGGTTTGAGATTAAGTACTATATATATTGTAATCATTATTTTTTATCTTTTGTACTACAAGCATAATTAGCATTATTGTATATTTATTAACATGGGTTTTGATATGCAACAATGTTTACATGCAAATTCACCTCATTGATGTGAAAACCACACTGTGAATATACTCAGTTAAGATCAATTATATGTTGGAATAAGAAGTCTCCATTTATTGTTGTACATTTTATGCACAAAAATGTGTCCTGACTTTTGTTATGTAATGACAAAACTGTACTTTATACTGGAACTGTtttacagtaaccaaaaaaggaaaataaaaaaagatttgaGGCCTGTACTATACGTAAGGAGCGGCTGTAAATCTGTACATTTGGAGCACATctgcattttttaaataaatgttttaatgttttgtTCCAActgggtttaaaaaaatatatctggACATTTGGTTGTTCTTAATGTCATTTTTATGTTTGTATTGAATAAATGGTTTTATTCTGAATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU557387 lncRNA downstream 14041 26389780 ~ 26390145 (-) True G490517
TU557383 lncRNA downstream 33808 26369257 ~ 26370378 (-) True G490513
TU557380 lncRNA downstream 38741 26365205 ~ 26365445 (-) True G490511
TU557375 lncRNA downstream 48314 26355414 ~ 26355872 (-) True G490506
TU557299 lncRNA downstream 179846 26223969 ~ 26224340 (-) True G490431
TU557495 lncRNA upstream 10583 26466002 ~ 26466279 (-) True G490616
TU557501 lncRNA upstream 12102 26467521 ~ 26468331 (-) True G490621
TU557796 lncRNA upstream 25668 26481087 ~ 26535452 (-) False LOC110525619
TU557834 lncRNA upstream 88071 26543490 ~ 26544586 (-) True G490886
TU557869 lncRNA upstream 153429 26608848 ~ 26648515 (-) True LOC110525621
XM_021605889.2 mRNA downstream 12895 26382960 ~ 26391291 (-) False LOC110525611
XM_021605890.2 mRNA downstream 12895 26382960 ~ 26391291 (-) False LOC110525611
XM_021605891.2 mRNA downstream 12895 26382960 ~ 26391291 (-) False LOC110525611
XM_021605892.2 mRNA downstream 12895 26382960 ~ 26391291 (-) True LOC110525611
XR_002473782.2 mRNA downstream 69353 26330079 ~ 26334833 (-) True LOC110525608
XM_021605898.2 mRNA upstream 312 26455731 ~ 26457883 (-) False tmem230b
XM_021605900.2 mRNA upstream 47525 26502944 ~ 26530832 (-) True dpysl2a
XM_021605902.2 mRNA upstream 79609 26535028 ~ 26549406 (-) False LOC110525619
XM_021605903.2 mRNA upstream 98119 26553538 ~ 26564330 (-) True LOC110525620
XM_021605905.2 mRNA upstream 186842 26642261 ~ 26711398 (-) False LOC110525621
TU557298 other downstream 121017 26279707 ~ 26283169 (-) True LOC110525606
TU556319 other downstream 906697 25496963 ~ 25497489 (-) True G489511
TU555826 other downstream 1297616 25106205 ~ 25106570 (-) True G489038
TU555288 other downstream 1694766 24706571 ~ 24709420 (-) False LOC110525585
TU555289 other downstream 1729285 24660897 ~ 24674901 (-) False LOC110525585
TU557449 other upstream 313 26455732 ~ 26457841 (-) True tmem230b
TU557799 other upstream 91803 26547222 ~ 26551627 (-) True LOC110525619
TU558306 other upstream 369448 26824867 ~ 26867158 (-) True G491291
TU558571 other upstream 761188 27216607 ~ 27244193 (-) True G491539
TU559251 other upstream 1279577 27734996 ~ 27736978 (-) True LOC110525653

Expression Profile