RNA id: TU557449


Basic Information

Item Value
RNA id TU557449
length 1682
RNA type TUCP
GC content 0.39
exon number 3
gene id tmem230b
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 26455731 ~ 26457883 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAGAGGGCATGAGTGCGGACGTTTTTATTGCAACAACATGTTATGTTTATGTTCTAACTCCTGATCTGAAAAGGCGGTATCCCTCTTTCTATTTTCATTTGGTTGCAACATAGGCTAATCGTAGTGAGTCGAGAGGAGCTGACACACTGATTAACACGTTCGTTGCAAGTTGACAACAGTGTATCTGAATAGGCAAGTGTCATCATTGTAGCATTTCTCAATATGAAATGATACAATGTACCGGCTGCCAATGTAACATAACAATGCAACAGTTTTAGCAAGTAATTTAAAGTAAAGATGAACGCTCGCAGCAGTTTAAGACAAGGAATACTTAACACTAAGGTCAGGTACTCCAAACTAGCCAATGATGATGACGGCTACATTGACCTGCAGTTCAAAAAAAGCCCACCAAAGGTCCCATACAAAGCCATTGCACTGGCAACTGTCCTCTTCTTGATTGGCTCTCTGTTGATCACCATTGGAGCTCTCCTTTTGGCAGGATACTTTGAAGTCACACATGCTGACCGGACTGTGCCCGTTCTCATAATTGGAATCTTGGTTTTCCTTCCTGGATTCTATCACCTACGGATAGCTTACTATGCATCGAAGGGCTACCGTGGTTACTCCTACGATGATATCCCAGACTTTGATGACTGAGCCACTCCTAACTGAGGCAACTTCTTTGTTATTTTCACATAACATTGTTGAATACAGTAAACAGACTGGGATCCAGGGTAGTCCTAAAGCAGATGTCCTTTTGATGTTTGTTCATCATGTCATGTCTGTTCACTTCTTGTTCTTTGACTGGATTACCACCATACTTCATTGTGAATGACTACTATATTTAGATAGGTTTGTGTTATTGTTTCTAACAAATAACATGCACATTTGTATTTACTTCATGACATGTCTTGTTTTTTTGCTACATATGCATatattttacatatacattttacatacatggcACTTTCATATACAGCAatcacataacaataatacataaCCGAACAGAGCTATTTAATCCCACCTCTCAGCCACTCTCATCCCACCTATCACTGTAGACCACCCTTGATTTTTAGTTGACTGACCAATTGGAAATGTGATTCTAGGATGCATTTTTTCCCCACATAACTTGCAGTTTGAGGTTTAGAGcaaattttgtttatttattcccATAGTTTTGGCCTCGTGTAGGTATACCCACACTTATCTATAAAAGGGAAGGATGTAATTTCTGATAAAATACATAGCTGTGCTGTAAGGGAGGCATGAGTTTAATTGTATTGTCCAACTGAAAGACCTGATCAGTGTAACCGTAAATCAATTTACTCTCACTCTGGTTGGTACCCCAACAGAACCATGAGTTTGAGATATTATGGCTAAACTTGAAAGTTGACTTTGTTTTTCTGTTGAAATGTCGCTTATGCTTTCCTGGAGGGTTCCTGGTAGGAGTATTTTATGTGATTAATGCCAATTCTTTGATCTCCATATGGTGTGCTGCTAGGCCTGTGAGAGTCAAGAAGGAAACGTTGTCACGCAACAATATAGTGTCTGGTGTAGTTTTCCACtggctgattttgaaaggcattGTCACTTGCAATGAAGTCTGTAGTGTATCCATATATTCAATTTAAAGGCATTTGTGGTTGAGCATCAGCTCCAATAAAGACTGTATCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU557387 lncRNA downstream 65587 26389780 ~ 26390145 (-) True G490517
TU557383 lncRNA downstream 85354 26369257 ~ 26370378 (-) True G490513
TU557380 lncRNA downstream 90287 26365205 ~ 26365445 (-) True G490511
TU557375 lncRNA downstream 99860 26355414 ~ 26355872 (-) True G490506
TU557299 lncRNA downstream 231392 26223969 ~ 26224340 (-) True G490431
TU557495 lncRNA upstream 8161 26466002 ~ 26466279 (-) True G490616
TU557501 lncRNA upstream 9680 26467521 ~ 26468331 (-) True G490621
TU557796 lncRNA upstream 23246 26481087 ~ 26535452 (-) False LOC110525619
TU557834 lncRNA upstream 85649 26543490 ~ 26544586 (-) True G490886
TU557869 lncRNA upstream 151007 26608848 ~ 26648515 (-) True LOC110525621
XR_002473783.2 mRNA downstream 312 26406261 ~ 26455420 (-) True igsf9b
XM_021605897.2 mRNA downstream 313 26404186 ~ 26455419 (-) False igsf9b
XM_036979736.1 mRNA downstream 313 26404186 ~ 26455419 (-) False igsf9b
XM_036979737.1 mRNA downstream 314 26404186 ~ 26455418 (-) False igsf9b
XM_021605895.2 mRNA downstream 315 26404186 ~ 26455417 (-) False igsf9b
XM_021605900.2 mRNA upstream 45103 26502944 ~ 26530832 (-) True dpysl2a
XM_021605902.2 mRNA upstream 77187 26535028 ~ 26549406 (-) False LOC110525619
XM_021605903.2 mRNA upstream 95697 26553538 ~ 26564330 (-) True LOC110525620
XM_021605905.2 mRNA upstream 184420 26642261 ~ 26711398 (-) False LOC110525621
XR_002473785.2 mRNA upstream 255615 26713456 ~ 26724026 (-) False LOC110525622
TU557298 other downstream 172563 26279707 ~ 26283169 (-) True LOC110525606
TU556319 other downstream 958243 25496963 ~ 25497489 (-) True G489511
TU555826 other downstream 1349162 25106205 ~ 25106570 (-) True G489038
TU555288 other downstream 1746312 24706571 ~ 24709420 (-) False LOC110525585
TU555289 other downstream 1780831 24660897 ~ 24674901 (-) False LOC110525585
TU557799 other upstream 89381 26547222 ~ 26551627 (-) True LOC110525619
TU558306 other upstream 367026 26824867 ~ 26867158 (-) True G491291
TU558571 other upstream 758766 27216607 ~ 27244193 (-) True G491539
TU559251 other upstream 1277155 27734996 ~ 27736978 (-) True LOC110525653
TU559292 other upstream 1369390 27827231 ~ 27835302 (-) False LOC110525655

Expression Profile