RNA id: XM_021605900.2


Basic Information

Item Value
RNA id XM_021605900.2
length 5193
RNA type mRNA
GC content 0.46
exon number 14
gene id dpysl2a
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 26502944 ~ 26530832 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCTCCAGACTTGGCCTGCAGCAGGTGAGTGGAGAGGCAGGGTGGGGCATTGCGCATGCACGGTGACCGTGGCCCTCATCACCGTTTATCTTATCGCTTGGTGACTGCTGGACAGGCTTGGCGCAGCATTGGAACGTGAGGAAAGCCTGTCAGACCTTTTAAATTCATTCAGCAAGCCTAGTTGGAACGGATTGAGCTATTTCACGAATTTAGTCAGGCGATAGCCGGAGACACAATTTTGTCTGGGCGTCGACTGGTCTCAACGCATCTGAGCATCCATCCCTTTCATTGCTAGCGGTCTAGCTAACATCAGTGAGTTGACAGACATAATCGAGGACGCTGACAACGCGCCGCTAAGATGTCCGGATACCAGGGAAAGAAAAATATACCTCGCATTACAAGTGATCGTCTCCTTATCAAATGTGGAAAGATTGTAAATGATGACCAGTCTTTCCTTGCTGACATCTATATCGAGGATGGAGTCATCAAGCAAATTGGAGAGAACTTGATAGTTCCTGGTGGGGTGAAGATCATTGATGCCCATGGACGCATGGTGATGCCCGGGGGCATAGATGTGCACACACGCTTCCAGATGCCAGACAGGGGCATGTTGTCAGCAGATGACTTCTACCAGGGCACCCGTGCTGCTTTGGCTGGGGGAACCACTATGATAGttgaTCATGTGGTTCCAGAACCTGGTGTGAGCCTGGTGGCAGCGTTCAACCAGTGGAGGGAATGGGCCGACAGCAAGTCCTGCTGTGACTACTCCCTGCATGTGGACATCACTAACTGGCACAAGGGCAtgcaggaggagatggagagccTGGTGAAGGACCACGGTGTCAACTCTTTCCTGGTCTATTTGGCTTATAAGGATGTTTTCCAACTTTCCGACTCCCAGATGTACGAGGTGTTCAATGTCATCAGAAACTTGGGAGCAATTGCTCAGGTGCACGCAGAGAACGGGGACATCATTGCCGAGGAGCAGCGTAAGATCCTGGAGCTGGGCATCACTGGCCCTGAGGGTCACGTGCTGAGCCGCCCGGAGGAGGTGGAGGCAGAAGCAGTCAACCGGTCAGTCACTGTGGCCAATCAGACCAACTGCCCCCTCTACATCACCAAGGTGATGAGCAAGAGTGCTGCTGATGTCATCGCCCTGGCCAGGAAAAAGGGTGCTGTGGTGTATGGAGAGCCTATCTCTGCCAGCCTGGGCACGGACGGAACCCACTACTGGAGTAAGAACTGGGCCAAGGCAGCTGCCTTCGTCACCTCCCCACCCCTCAGCCCTGACCCCACCACCCCTGATTATCTCAACTCACTGCTCTCCTGTGGTGACCTGCAGGTGACTGGTAGTGCTCATTGCACATTCCACACCTCTCAGCGTGCTGTGGGCAAAGACAACTTCACCCTCATCCCAGAAGGCACCAACGGCACTGAGGAGAGACTCTCCCTCATCTGGGACAAGTGTGTGGTGACTGGAAAAATGGACGAGAACCAGTTTGTGGCTGTGACCAGCACCAACGCAGCTAAGATCTTCAACCTGTACCCCCGAAAGGGCCGCATTGCAGTGGGCTCTGACGCCGACCTGGTCCTCTGGGACCCAGACGTCAGCAAGATCATCTCTGCCAAGAGTCACAACCTGGCTGTGGAGTATAATATCTTCGAAGGCACCGAGGTGCGTGGAGCTCCCCTGGTGGTGGTCAGCCAGGGCAAAATAGTGTTGGAAGAGGGCAACCTCCATACCACTGAGGGCTGTGGGCGCTATGTGAGCCGTAAGCCCTTCCCTGACCATGTCTACAGGAGGATAAAGGCTCGCAGCAGGCTGACGGAGCTGAGTGGGGTCCCCAGGGGTCTCTATGACGGGCCAGTGTGTGAGAATGTGACACCTAAGGTCATGACCCCGGTCACCTCGGTGAAGACCTCTCCAACCaagctgcagcagcagcagcaacagcagcagcaggctccCCAGCCCGTCCGTAACCTGCACCAGTCTGGCTTCAGCTTGTCTGGTGCACAAGTTGATGATAACATTCCCCGCCGCAACACCCAGCGCATTGCGGCGCCCCCTGGTGGTAGGTCCAACATCACCAGCCTGGGTTAAGCTCTACTGTCAGCTGAGCTAGGGAGGAGAGAAGCGGAGCAGTAGGATCCACCTCAGCTCCTAGACCAACCATCACAACCAACAAAGCTTCATCTATTGTGGTCCCGTCTCCCTGACTTAACTGCAAGCTGGTGGTCAAAAACACTCCATCCATCTTCATCCATACTTAACCGCTCTGCCACCTCAttcaaagaaaaaaaagaaatagcactcaatgttttgttttgtattaCCTACGCAATATgcaatcttttcatttttttaaaggaAGAGTCAAGTGAATTTAGAGAGTTCTTGATGTTTttctgtatatacactgagtgtacaaaacattaggaacaccttcctaatattgagttgcacccccttttgccctcagaacaacctctATTTgttgggacatggactctacaaggtgtcaaaagcgttccacagggatgctggcccatgttgactccaatgcttcccacagttgtgtcaagttggattgatgtccattgggtggtggaccattcttgatacacacaggaaactgttgagcatgaaaaagtacacctggcacttactaccatacccagttcaaaggcacttttgtATTGCCCATTCACTCCATTAACAgcaaacatacacaatccatgtctcaattgtctcaagacttagaaatccttctttaacctggctcctcaccttcatctacactaattgaagtggatttaacaagtcacatcaataagggatcatagctttcaccttgccagtctgtcatggaaagagcaggtgttcctaatgtattgttaactcatatatatacacacacacaatttaagtTTAGTCTTTGATTACATTTGGGCTTTTAATTGTACAAGAGGAGCTGTGGATTGTGTTCTTGTGGCATTTGATgtatctacactcttagaaaaaaggttttCAAAAGGGTTCTGTGGTTGTCCtcattggagaaccctttttggttccatttagaaccatCTTTCTAGAAccgaaagggttctacttggagcCAAAAAGAGGTATCCTATAGGAACAGCCAAATAACACTTTTAGGTCCTTTTTTTAAATATCGTACTGTATAAGGGCATTCTTGGTTTGACACCAGACAAGAAGAATCACTTCTGATTCCAAGAAGTGAGCCATTGCATTAGATCACTGTCAAAGACACATGGCGTATTTAACTATAGTACATTGGTTATTGTTTTTCTTCCATCATATAAGTACATGGAAGGTTTCAcaaatgtttttacattttcGAGGCTGTAAAATAGTGTTGTTGAAGGAACTCGGATTACGTTTTTACCTCACTAAGTCAGTTTGCAGTATTTGTATGATTTTAAAACAGCTGTGAGTTCTAGTTATTGTCCTTCCATAGCCTGTCTTTCTGGTCAGTATTACAACAGAACTTTCAGCTGAACAAATTCAATTATATCTTCCTTTGTCTCATTGCTGCACTTTTTGTATTGTTGTGATGTTTTTGTTGTTAATATTATACATTTTTGATCGTGTCTAGAGCTAAAACATTACTGTAATCTGAAATATTGACTCTTAGATCTTAGCTTGTCTGCTGATGGAATGTGCAGAAGTCAAGGGAGATGGATAAACCATTCATCTCCTCACTCCCCTCAGTCTGAACACCTTTGACACAAAGCATGCACAATACATGGCAGCAGGGAGaaccttcacccccccccccccaaaaaaaactgcTTCTTTTTCCTCCATTTTCTTCTCTCTTTTCACGAGCTGTCTGAAGTTAAAGGTCGCCGAGACACCAGGCTTCCTATAATCACACTGCTGTTTATTTTCTTATGACACTGACAGCCATGCTCGATAGAAGGTTGCCCCTAACAACCTCTCTGCACCAGGTGCTATTTGATCAATGCTGTGTATGTGCAGATGGTGGTGCCTACTTTTTCCACTCAACCACAGCAATTCAAGCTTTGTGAAACTACTTTACGGGGGAGCGGAGTCAGCTATTACATGACACGGGTCTTCGTTTTCTATCTGCTAAAGTGCAAAAAGTGAATCTGTGGAAATGCAatgttgatttgtatttgatatgtttgtttttgttgttttttcagaATGTTTGTTCAATATCACTTGCCTGCCTATTCTATAAAGTATTGATTGATAGTATGCTTTAAGAACCATGTATTTATGAAAAACACCTGTTAAGCACTGTCAGTGACCAAGCTAGTAAAAATACCTGTTAAGCACTGTCAGTGACCAAGCTAGTACAAATACCTGTTAAGCACTGTCAGTGACCAAGCTAGTACAAATACCTGTTAAGCACTGTCAGTGACCAAGCTAGTACAAATACCTGTTAAGCACTGTCAGTGACCAAGCTAGTACAAATACCTGTTAAGCACTGTCAGTGACCAAGCTAGTAAAAATACCTGTTAAGCACTGTCAGTGACCAAGCTAGTACAAATACCTGTTAAGCACTGTCAGTGACCAAGCTAGTAAAAATACCTGTTAAGCACTGTCAGTGACCAAGCTAGTACAAATACCTGTTAAGCACTGTCAGTGACCAAGCTAGTAAAAATACCTGTTAAGCACTGTCAGTGACCAAGCTAGTACAAATACCTGTTAAGCACTGTCAGTGACCAAGCTAGTAAAAATACCTGTTAAGCACTGTCAGTGACCAAGCTAGTACAAATACCTGTTAAGCACTGTCAGTGACCAAGCTAGTAAAAATACCTGTTAAGCACTGTCAGTGACCAAGCTAGTAAAAATACCTGTTAAGCACTGTCAGTGACCAAGCTAGTAAAAATACCTGTTAAGCACTGTCAGTGACCAAGCTAGTACAAATACCTGTTAACCTCTGTCAGTGACCAAGCTAGTAAAAATACCTGTTAAGCACTGTCAGTGACCAAGCTAGTAAAAATACCTGTTAAGCACTGTCAGTGACCAAGCTAGTAAAAATACCTGTTAAGCACTGTCAGTGACCAAGCTAGTAAAAATACCTGTTAACCTCTGTCAGTGACCAAGCTAGTACAAATACCTGTTAAGCACTGTCAGTGACCAAGCTAGTACAAATACCTGTTAACCTCTGTCAGTGACCAAGCTAGTA

Function

GO: NA

KEGG:

id description
K07528 DPYSL2, CRMP2; dihydropyrimidinase-like 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU557501 lncRNA downstream 34613 26467521 ~ 26468331 (-) True G490621
TU557495 lncRNA downstream 36665 26466002 ~ 26466279 (-) True G490616
TU557387 lncRNA downstream 112799 26389780 ~ 26390145 (-) True G490517
TU557383 lncRNA downstream 132566 26369257 ~ 26370378 (-) True G490513
TU557380 lncRNA downstream 137499 26365205 ~ 26365445 (-) True G490511
TU557834 lncRNA upstream 12658 26543490 ~ 26544586 (-) True G490886
TU557869 lncRNA upstream 78016 26608848 ~ 26648515 (-) True LOC110525621
TU557938 lncRNA upstream 176270 26707102 ~ 26729484 (-) True G490963
TU557963 lncRNA upstream 215410 26746242 ~ 26750563 (-) True G490978
TU557969 lncRNA upstream 224948 26755780 ~ 26818625 (-) True G490982
XM_021605898.2 mRNA downstream 45061 26455731 ~ 26457883 (-) False tmem230b
XR_002473783.2 mRNA downstream 47524 26406261 ~ 26455420 (-) True igsf9b
XM_021605897.2 mRNA downstream 47525 26404186 ~ 26455419 (-) False igsf9b
XM_036979736.1 mRNA downstream 47525 26404186 ~ 26455419 (-) False igsf9b
XM_036979737.1 mRNA downstream 47526 26404186 ~ 26455418 (-) False igsf9b
XM_021605902.2 mRNA upstream 4196 26535028 ~ 26549406 (-) False LOC110525619
XM_021605903.2 mRNA upstream 22706 26553538 ~ 26564330 (-) True LOC110525620
XM_021605905.2 mRNA upstream 111429 26642261 ~ 26711398 (-) False LOC110525621
XR_002473785.2 mRNA upstream 182624 26713456 ~ 26724026 (-) False LOC110525622
XR_002473786.2 mRNA upstream 182624 26713456 ~ 26724026 (-) False LOC110525622
TU557449 other downstream 45103 26455732 ~ 26457841 (-) True tmem230b
TU557298 other downstream 219775 26279707 ~ 26283169 (-) True LOC110525606
TU556319 other downstream 1005455 25496963 ~ 25497489 (-) True G489511
TU555826 other downstream 1396374 25106205 ~ 25106570 (-) True G489038
TU555288 other downstream 1793524 24706571 ~ 24709420 (-) False LOC110525585
TU557799 other upstream 16390 26547222 ~ 26551627 (-) True LOC110525619
TU558306 other upstream 294035 26824867 ~ 26867158 (-) True G491291
TU558571 other upstream 685775 27216607 ~ 27244193 (-) True G491539
TU559251 other upstream 1204164 27734996 ~ 27736978 (-) True LOC110525653
TU559292 other upstream 1296399 27827231 ~ 27835302 (-) False LOC110525655

Expression Profile