RNA id: XM_021605903.2


Basic Information

Item Value
RNA id XM_021605903.2
length 3697
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC110525620
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 26553538 ~ 26564330 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcgctCTACCGGAAATTCACAAGAAGaagtctgtctctcactgacgTCAATGCAGGACTAGGTTGCGCCATTTTGAAAGTAGAAGCAGGGAGGGGAAAATTTTGCAAGCAAGCAGCCAGCTAAACAAGAGGCTTTGCAAGGTGTTCCAAGGGAGAGTTGCTGATTGTCAAAGCACTGCTAAGCAAGATAAGTGACATGAGAAGTTGAAGAATAGTAGGGGGAAAGCCACACACTCTGTAGCTTTACGATTCACCTGCACTCATCGAGATTCTGCTTGTACACACCCTAGCACGGTAAACTGGAAAGATAAGCAAGGGCCCCAACCAAGGCAAGCCCTCCTCGACAGAGATTCCCTCTCCACCATGGCAGGAGCTGGCGGCGGAGGCAATGATGTGCAGTGGTGTTTCTCTCAAGTCAAAGGAGCGATTGATGACGATGTGGCTGAAGCTGACATCATATCCACTGTGGAATTCAATCACTCTGGGGAGCTGCTAGCCACTGGGGACAAGGGGGGCCGCGTTGTGATCTTTCAGCAGGAGCTAGAGAGCAAGAACCAGCCACAGTGCCGTGGGGAGTACAATGTTTACAGCACCTTCCAGAGCCACGAGCCCGAGTTCGACTACCTGAAGAGCCTTGAGATCGAGGAGAAGATCAACAAAATCCGGTGGCTGCCTCAGAAGAACGCTGCACAGTTCCTCTTGTCCACAAATGATAAAACTATAAAGCTGTGGAAAATCAGTGAACGGGACAAGCGACCAGAGGGGTACAACCTCAAGGAAGAGGATGGGCGCTACAGAGACCCCACTACCGTCACAACACTACGGGTCCCAGTGTTTCAGCCGATGGACCTGATGGTTGAGGCCAGCCCCAGGCGAGTGTTTGCTAATGCACACACCTACCACATCAACTCCATCTCGGTCAACAGTGACTGTGAGACCTACTTGTCTGCTGATGACCTTCGCATCAATCTCTGGAACCTAGAGATCACTGACCGCAGCTTTAACATTGTGGACATCAAGCCAGTCAACATGGAGGAGCTGACAGAGGTGATTACAGCAGCAGAGTTCCATCCAAACCAGTGCAACACATTTGTCTACAGTAGCAGCAAGGGCACCATCCGCCTCTGtgacatgagagcatcagctctcTGTGACCAGCACTCCAAACTGTTTGAAGAGCCTGAAGATCCAAGCAATCGTTCATTCTTCTCTGAGATTATCTCTTCCATCTCTGATGTCAAGTTCAGCCACAGTGGGCGCTACATGATGACCCGGGACTACCTGTCCGTCAAAATCTGGGACCTCAACATGGAGTCCCGTCCAGTAGAGACTTATCAGGTCCATGAATACCTCAGGAGTAAACTGTGCTCACTCTATGAGAACGACTGCATCTTTGATAAGTTTGAGTGCTGCTGGAATGGAAACGACAGTGTTGTGATGACGGGCTCATACAACAACTTCTTCAGGATGTTTGACCGAGGCTACCGGCAGGATGTGACCCTGGAGGCGTCTCGGGAAAGCAGTAAGCCTCGTTCTGTGCTCAAGCCCCGCAAGGTGTGCACAGGTGGGAAGCGCAAGAAGGACGAGATCAGTGTAGACAGCCTGGACTTTAACAAGAAGATCCTCCACACGGCCTGGCACCCTCAGGACAACATCATCGCCGTGGCCACCACTAACAACCTCTATATATTTCAGGACAAACTGTAACAAATATTCAATGAACCCTTCATATCCCAGATCCCACTTTAGCCTCACTACTCTGGTCCCCAACATCTCAACTGGAAAAGTGCAGCAAAACGCCTCTGTTTTGATGGCTTTCTTAGTCTTATTTCCTGTTCAGGGGGCTCCAACAGTACCACACTTCTTCTGCCACATTGCAACTGTTGTCCACTACATCCCAAAGGGAACACTTTTTTAACACTAGTCTTTGCGATATTGATATGTTGCTAATTTAACGGTTTTGGTGCCACAagcattttttatatatacaagCATTTTTTTCTTTTGATAGGAAGTTGTtccctcccacccctccatcGTTGACACAGATCACAACATTGCTGTTCTTCACTGACCAAATTGGCAAGCTGACAGCTCTCAATTTTTGTCCCAGGCCATTTGTCAAATTTCCAAGTTTGCTCACCCTctttcacatacagtacacacttacTCTAAACATTGATGTagacacgtatacacacacacacaatagctcAACTCAGTTGGTGGGCTGGGTTGGGGTCTGGGGGTAATTTCGAGACAACTATGTAGAATATAGAGTTAGTCAGTCTGAGACTACAGATGAGAGGGTTAACCGTCTGGTAAGCACAGTGCCCTTCTCCAGAGGTAGCCTACAGTATGAAGCCATTGCTTTTCCAAGTAAACGGTAGTGGGCAGAGGTATTGCAGCCTAATCTCCTTCTTGCACTTAGAGTGCCACCATGTACAGCTCAGCACAGAGGCTCCAGTGCAGTAATTGCAGGAGAAAGACAGGCCTGCCTTGGCTGACCTGCATGACTTGTCCGTTTTTAAATGTAAGCGCGGCACCCATTTGTACCTCTGCTGCTCAGTTCCATGCATGCGTCTTGACTTATGCTTCTTGTGAATTTAAGTTTTCCCTCTGGATcaagttttttgtttgttttttaatgatGTTTTGTACTTCAGATAAAGAATAATCACTATAATTAGTTTATTTTTGTATGAATTAAGAAGACAGAAATATTGATTGATATCCTTTAATCCCTTCGCACTACTTGGTGTAGTCTGATCACTGTTGTCTATTAAGCTGTAGGTTTTGGACTGGTCTATGGACTGAAGGATTACTTGGACTGGTGAAAGTTAATGTGACTTACTGTGTTAAATTCACGTGGGCTGCGGGTTTGAGGATGGAGTGCATATTAATGTGCCATTAAGAAAGGCTTTATGCATGTTGGATGTCCAAATAAGTATTTTCAGGTATGCGTCACTGTGGAATCATAATGGTCATTCGTTTTTGTATTTGGGTTACTGTAACCGATATTGACTGGAATGGATTCGGGTGCTTCTGAGTTTAAGCTAGTTCATTTGCGCTAATTGTTTTAACTCCGGTGTGGATCTGTGTGCATCCGTTTGTTTGCCATGGCTGTGTTTTCAAAAAAATTGCACTGAGTAAAATATCATTTTATTATTAATAGCCCATTGTACGTTGAGAATGGGAAAGGCATTATCTGTTTGCTTCAGTTTGACTGAAGAAATGCTCTTAACCGCACGTTCACTGAGTATCAGGTTTATTGACTAGACAGGGTTACTGACTTGAAATATTTTATGAAACAATATTTTCTCTCTTTGATTGTGCGTAAGTTCTTTATGCAGGAAACAAACAAAACTGTTAAGTGAGTCGTGTTAGTGGGTATCATTGGATGGAATTACTGGGTAATGTCAGCTCAGGGCATTGGAGACAGTATTTAAAATAAACGGCATTTCCAGCGTTTGTACTGTATTTAGTCAATGTGGCATTCTTTGTTGATATTTTGGGAGGTAAATAATTTTTTCTTCTGTCTGTAGCACATGGCTACGCGAATACTTGATTGACGAGATACCAATTGTGAGCCATTTGATCGTAATAAGTTAGCATTAAGAGTATCAATTGAGTCTCATTTACTAGTAAGGCTACCAATAAGCACTATTGCAGACTGCAATAAAGGTCATTAGCTCTA

Function

GO: NA

KEGG:

id description
K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU557834 lncRNA downstream 8952 26543490 ~ 26544586 (-) True G490886
TU557796 lncRNA downstream 18086 26481087 ~ 26535452 (-) False LOC110525619
TU557501 lncRNA downstream 85207 26467521 ~ 26468331 (-) True G490621
TU557495 lncRNA downstream 87259 26466002 ~ 26466279 (-) True G490616
TU557387 lncRNA downstream 163393 26389780 ~ 26390145 (-) True G490517
TU557869 lncRNA upstream 44518 26608848 ~ 26648515 (-) True LOC110525621
TU557938 lncRNA upstream 142772 26707102 ~ 26729484 (-) True G490963
TU557963 lncRNA upstream 181912 26746242 ~ 26750563 (-) True G490978
TU557969 lncRNA upstream 191450 26755780 ~ 26818625 (-) True G490982
TU558017 lncRNA upstream 258563 26822893 ~ 26823157 (-) True G491027
XM_021605902.2 mRNA downstream 4132 26535028 ~ 26549406 (-) False LOC110525619
XM_021605900.2 mRNA downstream 22706 26502944 ~ 26530832 (-) True dpysl2a
XM_021605898.2 mRNA downstream 95655 26455731 ~ 26457883 (-) False tmem230b
XR_002473783.2 mRNA downstream 98118 26406261 ~ 26455420 (-) True igsf9b
XM_036979736.1 mRNA downstream 98119 26404186 ~ 26455419 (-) False igsf9b
XM_021605905.2 mRNA upstream 77931 26642261 ~ 26711398 (-) False LOC110525621
XR_002473785.2 mRNA upstream 149126 26713456 ~ 26724026 (-) False LOC110525622
XR_002473786.2 mRNA upstream 149126 26713456 ~ 26724026 (-) False LOC110525622
XR_002473787.2 mRNA upstream 149126 26713456 ~ 26724026 (-) False LOC110525622
XR_005052047.1 mRNA upstream 149126 26713456 ~ 26724026 (-) False LOC110525622
TU557799 other downstream 1911 26547222 ~ 26551627 (-) True LOC110525619
TU557449 other downstream 95697 26455732 ~ 26457841 (-) True tmem230b
TU557298 other downstream 270369 26279707 ~ 26283169 (-) True LOC110525606
TU556319 other downstream 1056049 25496963 ~ 25497489 (-) True G489511
TU555826 other downstream 1446968 25106205 ~ 25106570 (-) True G489038
TU558306 other upstream 260537 26824867 ~ 26867158 (-) True G491291
TU558571 other upstream 652277 27216607 ~ 27244193 (-) True G491539
TU559251 other upstream 1170666 27734996 ~ 27736978 (-) True LOC110525653
TU559292 other upstream 1262901 27827231 ~ 27835302 (-) False LOC110525655
TU561692 other upstream 2846885 29411215 ~ 29415314 (-) True G494389

Expression Profile