RNA id: XM_021605905.2


Basic Information

Item Value
RNA id XM_021605905.2
length 9568
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110525621
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 26608848 ~ 26711398 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGGAGCGAAAACCTTTGCCAGTGATCTGCTTGGCTAAATCCCACCAACAAAAGCTTTAACTGGCGCTTGCTGACTGGATTACACGCTTGCTGCTCGGAATATCAGCGTATTTTGTTAGTTGATAGGCTATTAATTTGGCGTTTCTTGAGTTAAGTCACACATAGGCCTAAACTTATTTTCAAAGTGTATTTTTCCATGGGTGGAATTCTGTTTATGGGCTTTTTACATCATCATCTGTTAGAGTACAACGCTTTGCTTTGCTTATGTAATTGGAGTCGTGGTATGCAACTGCTATAAGGATACGAGCGCTAAATAAGGCTACTCCATACTTACAAGACTTTTGATCACAGCGGCAGGTGTGCACAGTGCAGTGCCTTTGGCTGTGGAGCAAATTGGCTGCACTGACTTCGTTGCATTGGTTAGTTGAGCAGTGTTGGTTATTTGTCCAACCAAATGAGGACTGCGCGTGACATGCGGGCTTTGGAGTCAAGCATCAGAAGGCTCTAACCTGTGGAAAGAAGCCGACAGCACGCAGACATGGGATCCCTGATGCGACGTAGATGGTTCATGATCCCATTGTTGGTGCAGGGCTGGCTGCTAGCGTCTCCAATCAGTGAGCGAGCCTGTCCTCAAAGCTGTAGATGTGATGGGAAAATAGTATACTGTGAGTCCAATGCCTTCCGGGATGTGCCAAACAATGTGTCTGTGGGATGCCAGGGCCTCTCTCTGCGCTACAACAGTTTAGTGAATCTCAGAGCTAGTCAGTTCGCAGGCCTCAGTCAGCTTGTTTGGCTTTATCTCGACCACAACTACATTAACACAGTGGACAGCCAAGCCTTCCATGGGGTACGGAGGCTCAAGGAGTTGATTCTCAGCTCTAACAAGATCACACAGCTACAAAACAACACTTTCCATACTGTCCCTAACTTACGCAATCTTGACCTTTCTTACAACAAGCTGCAGGCCCTCCAGCCCAGTCAATTTCAGGGCATGCGGAAGTTGCTTAGTCTCCACTTGCGGTCTAACTCCCTGAAAACTGTCCCAATGCGTGTTTTTCAGGATTTGCGCAATTTGGAGTTCCTCGATCTAGGCTACAATCGATTGCGAAGCCTGACTCGAAATGCTTTTGCTGGGCTGCTCAAGTTGATCGAGCTTCATTTGGAACACAATCAATTCTCAAAGATCAACTTCTCTCACTTTCCCCGCCTCACCAACCTGCGGGCACTCTATTTGCAATGGAACCGAATTAAGTCAATAAACCAGGGTCTAACCTGGACGTGGACGTCCTTGCAAAAACTGGACCTTTCTGGAAATGAACTGCAAGTTGTGGATGCCAGTACGTACCAATGTCTCCCCAACCTACAGACCCTGAACTTGGACTCCAATAAGCTTCGCAACATGTCCCAGGAGACAGTGGATGCCTGGATCTCCCTCACCACCATCAGTCTAGCTGGTAATGTGTGGTACTGTAGCCCTACCATCTGCCCCTTAGTGGCCTGGCTGAGGAACTTCAAGGGGAACAAGGAGACCACTATGATTTGTGCTGGGCCTAAGGAGGCCCAAGGAGAGAAAGTGATCGATGCAGTAGAGACATTTAGTATCTGCAAGGTCACTCCCACCACCCCTTTTGTCTCAACCACAGCCTCCCTCAACATCCCATCTCAGCCTGAGCTCCTGCCCCTTCCCACGTTGTCTCGGGTTGAAGAGGAGTTGACTCGCAGTGCTACGACCATTCCGTCTCCTTCAGGGGTCTCCCCTACCACCCCAGAGCAAGACTTTGAGTATGTGTCTCTCCATAAGATTATTGCTGGCTGTGTGGCACTTTTCCTGTCGGTGGCTATAATTCTCCTGGTTATTTATGTGTCCTGGAAGCGCTACCCCAACAGCATTAAGCAGCTCCAGCAGCGCTCCATGGTCAAAAAGCAGCAAAAGAATGTGCGGGAAACAGAAAGCACTCTCAGCTCACCTCTGCAAGAGTATTATGTGGACTACAAACCTGCAAACTCTGCAACTATGGATGTGCTGGTTAATGGGACTGGAccctacacatacacaatctcagGCTCCAGAGAATGTGAGGTATGATCCATTTCCACTGCGGGGCACCAGAGGTACCACAGCAGTTGAGTGCCCTGACGTTGAACAGGTATGAGCAGCCCGTAGTGGATTACTGCCAGGCCCAAGGGGCGCTGCACCTCAACATGGGCTTTGAGCCCCCCTCCCAGGCACAGGGCTGTCTGAGGCCACCGGGCTGCAGTACAGGTCATACAGCTGGTCTCCCCTCTACACCCACCACCTTGCTCATACGCACGGACCCCCATTCCCTCTAACAGTGACTTGTGACCTGTGCAGATGGGGAGACCAGACCAGTGCTCCCCTCTCCATCTAGGCTACTGAGCATGGTGTTGTTACAGTACTGTATACCGCAGCAGATAATGAGTGAAACAGATACAAATCTGCACTGAGGAAGAACATTCTGACTGGAGAATCTGTTATTAATGGAGAGAATACATTTATCTAACACTGAATATACCTTGACTAATGAAAATGAAAATATTCATTAATGGAAATTGCAGTGTActgttacagtatattacatgATAGCTGCCCCTTTGATGTCCATTATAATTGAATATAGTCCAGTTGCAGTATCACATTCCTTCTGCTTCTAAAATGTTCTCCAGCATCATGGGGAGAAATATAAAAAATGACATGATTCATTACTCTTATTGAACTTATTGACTCTGCTGCTCACAGTTTCGGCACCTTCACTGTTTTAGGTAAGTAATTATCTACAAAATGCAATAATAGATCTGGGGAAACAGTAGGGTGAGCAATGGAATAGCAGAACAAATTAAAGACTAACAGAGCTGAAAGGTTTTATGCTGCTTTTTCTAATAATGCTGCCAGTCAGAGGCCTTACAGATTTTCCAGTCTCCGTAGCTATTTCATTTCAAGAAGTGAGCCACTCAAATGAAATGACCCACAACGACAAGGGCAAACTTGGTAAGTGATGGGCACACCGTTTTCATGTCAAGTGTACAGATTACATTTCTTTTCCAGAAGTACATTAAtgaatatttttattattttggtGATTTTTATGTTAATTTTACTATaatgcaattattattattatttttgtttccAAGATGAAAAGTAAAACGTTGATGCGTAATAGACTAATTGTTTTCATGTGAAGTGTAGCCTACAGCTGACATATCTTGTCAGAAATACATATTTGTTATTGTGTTGATATGGATTTGTTCATCATGATCATCATTGCATTTTCATGATTAATGTAATGacaatttattttatatttatgtcACGTCAATCGTCAATCTAATTGTAGGATTGTCTCTCACATACCATGTGTAGTTACTTAAAGGGAAGCATTTTAGTGTGACCATTAATTGACTTTGTGACCTCAGATAATGACATTCACCTAGAGATCAGCAGTGAATTCACTCATAGTGGAGATAACTGTTGTAACAGCTTAACCCAGACTGTCTAATATTGATGCCTGTCTGCTCTCCCCAGCTGTGACGCATTCGATCTTTGTATCCCTTTTCCCCAATGTCTACTGTGACTGTTacagttttcatcaaggagctcaTACTCATACTCCACTTCAAGGACATATGTAATAACAAAAACCCAATGAACTTGTTCAATACTATGAATAGGTATCAAATAAAGTGTCTCGGCTGCTTCATGAACACGGCCATTTGCCCATGAAGAGGAGGAGCCTTATCTGAAGTTCAGATGAACATGCCCTGATTTGGGTTTGCAGGCTGGGTATGAGAGTGTGACTGACATTTTGTGAAGTCGAGGACTTGCAATATTGGCTTGCTGTTTGAAGAAGATGTTATCCTGATTTCTGTTAATTAAACCATATAAAATATCAGCTTGAACTGTCGTCACACGATAAAATTATATTTCAATAGATTTTCTGACCAAATGTTTTTTATGCTCATTGAAGAAAAAATTCCTGTGAACATTAAAATTACTTTTAACATGTATTTACTGAgatttaatttttattttcatACCATGAAATTACACTGCTTATCATGTCTGAGAGTGTGGTGTTTTGGGATAATCTTGACCACAAGTAATACAGTGCTGAATGAtaacttttttaaatttttatgtTCTGCATCAAAGCATCACTGATCTGAAAAATGTATGAATAATTTAAACAAAGTAAAGTCATTATTAACTGATGCAACACCATTTACCTAATTGTCACATCTTTAAACAGTATCGTTTGCTTTTGTAAATTGTGAGATTTTCGTGTGCATGGTGAGGAAGGAGACTACTTTCCACATCATACTCAAACTCAGATAATGAAAAGCAAAGTGTATTGAAGAGGATTTATTGACTTTATAAAGCAATCAAATACACTGATTGAGCTCAATCCGGTGGCATGCTCAGGATAGCATACATAGAACATTTATTTCCCAATTATTCTTCACCCTCTGAGTTATTCCCATCCCAGTGAAATATTCATTGACAGTGCATAACCGCTATCATCAAGAGAGAAGAATGAGATTCTCTCAGTCTTAAATTCGGCTGAAATACTTTCTTCAAGGCTGCCACATCCTGGTTTGTCTTTGTTCTCGACTATGCAAGAATAACAGTCTTTGTCTTCTTTCTGAGACTTAATCATTTTCAATTTGCTCTATTTTCTGACTGTGGACCTAATTTTTAGAAGTGAAAAGTTTGCTGCAATAGCAAGAAAAGTTGGTTATTTTTCCTACCTGGACTCAAGGGTAGACTTACAGTAACTTAGTAACCGTAAAATCAtgacactccaattagtatgatatgttacgtttcttATGGTATGTATCCATTtttggatgtccatcatccatttcgaatgtatgttacaaattacaattcatatgatatgctatgaattacaatttgtacAATATTTTACTAACtgcaattcatacaatatgttacaaatttgctaaatgtatgaaatcctaatgttagctaggtggctagacTACGGGTTAGTGTTAAggatagggttaagtttaggagctAGGTTAAAGAGCTTGGGGAAGGGTTAGCtgacatgctaagtagttgctaaTTAGGTCAATTTCTAAAGTTGTCGATGATGAGATTTGAAGTCGCaatctttgggttgctagacgttcgtgTTATACTTCTGACCATCCACCTCGACCAACCACCCTATTTTCTTTCTTgctttaagtaaccttctgtattatgtaaccataccaaatgtaacatatcatactaatttgagtgtcctggatttatatttactatgttacgtctagtctatgagaccaggcagATTCTTCACCCTGATTTTTTATCTTCTTGgaaggttgtttttttttacttcctCCTAAGAGCTATTAAAAGTAAGCCAGGCCACACAGCGCTTTTTATCATTTGGACTTACGTCCTTTTCTTCTGTTTCTGCTTCGGGAAAATTGTCCAGTGGTGTGAGAGGCATCTCTGAGAACCCTGTCTCCTGATGGTGAAGAATAGGCCTTGAACCTTTTGAAAAAGGGACAAAAAGGTTTTACATTTAAATGGTGCACTAACCAAGAGTGACCTCCAATACAGGTGATTCAAAGCATAATATTAAGGATGCATTCATAGACACATTTTGTGCAGGCTTGCACAGATGATCAGATTTGTACAAGGCCTGTGGAAGTGTTTAACATTTTAGAAACATGTCAGCATGAATGTACATAGAATCTGAAATCTAGGCCAACACTCTGTTTCCTCTTAAGCAATTTAAAATCCTACACAATTTttgaataaatatttttttctcagaaCAGAAGGTACATTTAGTTGCATGGCCTACATTATAAGACACACATTCCCATCCAGTATATCTCTGCAGTAGCCTACTTATCTTGTGCTTCTTAGAATTACAGTTGTGGCATCTGTGATTTTTAATCCCCTTTATCTTGTTTGTCCTTTGTATCATGCAAATGACATAACTAACATCTTAGAAATAAAGAGATTAGATGACGTAGCAGTAACAGATGAAGTAGTGCTTCAGTACAGTGGTCTTCAGTTTTTCTTTGCCCTTTCTTTGTTCCTGTGTACTGGGTATTGTCATCTTGGAGTTGTGTTAAGACTTCAAGCAGGCTGGCAGGGCAGCTGTGAAAGCTCCTGATTTCCCTTGGGATGTTTTGGGACTGCTATGCCAACACTTTCAGATTACCTTTGCCATTCCAGACAGAGCAAACCCAGTATGGCGTCTGTCCTGCACCCAGTTTATTTTTAAACTCCTCTATCCTCTCAGCAGGTGGTGTTTTTTTCTCTAAAGCAGTCCTCTGCCTTGGCCTTGGTTTGCAGGGTCAAGGGTAAGCTACATCATCCCATGGTTTTATATATTCAATCTTATTCTCTACAAAGGCTAAGAATGAGGTGATTCCTCATATCATACACCGAATCAGTGTTCAATGAAGAACTGTAAATGATGGAATCTCAAAGCAAAGCAAAATAGCAGTATGAGAAGACGTGTAACAATGAAAGAGCAGATAAGATCATTGATTCTATTTTTTACTGCCTGTCCCTTGTTTCCCCCCATATTGTTCAATTTTCACACAGTGGAAATATCATGTGTACCGTGGCACTGACTCATTTCTAATGATGGAGCATGTCTATTTGTTGACTGTTTGGGTGATGTCTTTGTTGTCTTCGGCCTCTCTttatatgtagtgttgtggtgtctctcttgtcatgatgtgcgttttgtcctatattttattaataaaaaaaaatcccagccCACATCCCCGcaggtcttttgccttttggtaggccgtcattgtacataataatttgttcttagctgacctGCCTAGTGTTATAGCGTGGACACTATATACATAATTACATTGAATATGTATTGTACTTACCTGAAGTATAGTATGATTGCTATTCATGTGTGCATGGTAATTATTGGCATTGACGGTGACCTTCCCCTTTGATGAGGTCATCATCCAGAGTTGGATCTGTACAAGGCGACTCTTATCATATGTTGAGTGGGCTGTATCGTTTTGCTGTATTGGTACCGTTTGTACATGGTTGTACACCTTTTATTTTTTAGGTTGAAAATAAAGGAAAGTAATATAAAAATGCTTGTGGGCATTCCTTGTCAAGTTACTACATCTTTTTGGCAATGAGGATAAAACGTATAAATCTACATGGCGATGCACTCGCTAGCTAAGAAACGGAGGTAgtcagttagctagctggcttaaTGAGCAACTGAGAGCAGCCACCGCTGGAGGGAAACGCTGACAGTGACAATCAGCAGCAAGTGAAAATCACTAACGAGGACCAAGAACAAGTTGACGTTATAATGGCAATGTTTGGGACTATCACTGACTTTGTGGAAGAGAACGAGGACTGGACAGGATATGTGGAAAGGTTGGGACATTTTTCTTTGGCAAATGGAATTACAGATGAGTCTAAGCAGGGCTCTATtcttttgagtgtgtgtggggcTAAAACCTCAAATCTAATGAGGAATTTGGCTACACCACGGAGACGGAGAGAAATTCCTTTTGTGGATCTAGTTGCTCTCGTTCAGACTCGCCACAATCCAAAGCCTTCAGTGATTGTCCAGAGGTTCAAGTTTAACTGCCATTTTTGGAAAACAGGTCAGTCTGTTGCTAACGTTGTTGCTGAATTACGTGAACTCTCGAAACATTGTGAGTTTGGGGCTATGTTAGAGGACATAACCCCAACAGTGGAAGTGGTACAGTGCATCAGGTGACAAAAGAGGGGGCAGTGGAAAAGCAGTGGAATGTTTCAGATGTGGGGGAACACATTACGCAAACTGCAAGTACCCGGATACGGTCTGTCACAATTGCAAGAAAAAGGGACACAGCTAAAAAATGCAGGGGTCCTGGGAGCAAGCCAGAGGGTGGGCAGACTGGACAGGGAAAGTTCACAGCAAAGAAGTCACTGTCAGCAGCACATTACCTAGAGAGcacagaagaggaggaagagcatTGTTCCTACAACATGTTTAATATGAGTGAGCCCCACGCAGAGCCTATCTATGCTACAGTGGAGGTAGGTGGAAAAAAGTTGAGGATGGAGATGGACACGGGGCTTCTGACTCTGTTATCAGTGAGGAGACCTACAAACAAATGTGAGGCTCAAAACAGGCTTCCGCCTTCACACCGGCAGGGATCAGACTGGGTACATACAGCAGGGAGAGCATACCATTGCTGGGTGCTCTAGAGGTGGACATTGCATACAACATGGCTCCTGGTGGTGAAAATGAATGGGCCTAGTTTACTAGGGCATGATTGGCTCACCAAAATACAACTGAACTGGGGTGAGATAAATCACACACACGAGTGACTGAGGATGCCATTCAAAAGTACCCTGAGATTTTCAAAGATGAACTGGGAACACTGCAGGGCACTGCAGTTAAGCTGTTTGTGGATCCTCAGGCCGAGCCTTGCTTTTTCAAGCCCAGGAGAGTGCCTTACGGCATGAAAAAGAAAGTGGAGGATGAGTTGGAGCGGCTGCAAGTAACATCATTACTCCCATTCAGATCTCCCGCTGGACAGCTCAAATCATTCTTGTTATGAAAAGTGACAGAACTGTGTGTACATGCGGGGACTACAAACTCACCATCAACAGAGCCTCTAAGCTGGACGCGCAGGACCGGTTTGCGATGCTTGCAGGGGGCAAGATGTTCTCAAAGCTTGACTTGAGTCACGTCTAGCAACAGCTCCTCCTGGACGAAGACTCAAAAGAGTATGTCCCAGTCAACACGCACAAAGTCTTGTTCAGGTACAACCGCTTGGTTTTTGGAGTGGCATTCAGTCCAGCCTTATGTAGCAGTGTACTTGGACGACAGCCTGGTTACAAGGGAGACGGAGGAGGAGCACCTCCACCATTTGTACCGGATGTAAAAGAGATTCTCTGAGGCAGGGCTGCGCCTGAAGCGTAGGAAGTGCACATTCCAAGCACCTCTACGGTCATCATTCACCATATGCACTGACCACAAACCACTGATGAGCCTTTTCAGTGAATGAAGATGCATTCCTCCCATGGCTTAAGCAAGGATACAGTGCTGGTCCCTCACACTGTCAGCTTACCAGTAAACTATTGTGTACAGAGAGGGGAAGGACAATGCAAATTCAGACACACTCAGCCGTCTCCCGCTACCAGAGATCCCCGCCACAATGCCTCCCAAGACAATTTTCCTAATGGAGAGATTGTTAAACTCACCTGTGAATGCCAAACAGATCAAACAGTGGACAGACCGGGATCCTATCCTGGCCCAAGTGAAAAGATTCCTCATGCAGGGTTGGCCTCCTGTCATAGAGGATGATGGACTGAGACCTTATGCAAAGTGCAAATCTGAGCTGAGTGTTCAGGATGGCTGCATACTCTAGGGGTCCAGAGTGGTTGTTCCGTCCCCTGGCCGTTCACAAGTCATGGATGAGGACCATGAGGCTCACCCGGGTGCCTCCCAGATGAAGAGTTTAGCCAGATCTTACATATGTTGGGTTAACATGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU557834 lncRNA downstream 97675 26543490 ~ 26544586 (-) True G490886
TU557796 lncRNA downstream 106809 26481087 ~ 26535452 (-) False LOC110525619
TU557501 lncRNA downstream 173930 26467521 ~ 26468331 (-) True G490621
TU557495 lncRNA downstream 175982 26466002 ~ 26466279 (-) True G490616
TU557387 lncRNA downstream 252116 26389780 ~ 26390145 (-) True G490517
TU557963 lncRNA upstream 34844 26746242 ~ 26750563 (-) True G490978
TU557969 lncRNA upstream 44382 26755780 ~ 26818625 (-) True G490982
TU558017 lncRNA upstream 111495 26822893 ~ 26823157 (-) True G491027
TU558441 lncRNA upstream 327646 27039044 ~ 27039874 (-) True G491417
TU558505 lncRNA upstream 397976 27109374 ~ 27110138 (-) True G491475
XM_021605903.2 mRNA downstream 77931 26553538 ~ 26564330 (-) True LOC110525620
XM_021605902.2 mRNA downstream 92855 26535028 ~ 26549406 (-) False LOC110525619
XM_021605900.2 mRNA downstream 111429 26502944 ~ 26530832 (-) True dpysl2a
XM_021605898.2 mRNA downstream 184378 26455731 ~ 26457883 (-) False tmem230b
XR_002473783.2 mRNA downstream 186841 26406261 ~ 26455420 (-) True igsf9b
XR_002473785.2 mRNA upstream 2058 26713456 ~ 26724026 (-) False LOC110525622
XR_002473786.2 mRNA upstream 2058 26713456 ~ 26724026 (-) False LOC110525622
XR_002473787.2 mRNA upstream 2058 26713456 ~ 26724026 (-) False LOC110525622
XR_005052047.1 mRNA upstream 2058 26713456 ~ 26724026 (-) False LOC110525622
XR_005052048.1 mRNA upstream 2058 26713456 ~ 26724026 (-) False LOC110525622
TU557799 other downstream 90634 26547222 ~ 26551627 (-) True LOC110525619
TU557449 other downstream 184420 26455732 ~ 26457841 (-) True tmem230b
TU557298 other downstream 359092 26279707 ~ 26283169 (-) True LOC110525606
TU556319 other downstream 1144772 25496963 ~ 25497489 (-) True G489511
TU555826 other downstream 1535691 25106205 ~ 25106570 (-) True G489038
TU558306 other upstream 113469 26824867 ~ 26867158 (-) True G491291
TU558571 other upstream 505209 27216607 ~ 27244193 (-) True G491539
TU559251 other upstream 1023598 27734996 ~ 27736978 (-) True LOC110525653
TU559292 other upstream 1115833 27827231 ~ 27835302 (-) False LOC110525655
TU561692 other upstream 2699817 29411215 ~ 29415314 (-) True G494389

Expression Profile