RNA id: XR_005052047.1


Basic Information

Item Value
RNA id XR_005052047.1
length 5109
RNA type mRNA
GC content 0.42
exon number 14
gene id LOC110525622
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 26713456 ~ 26724026 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAGGAGCTTGAGTCGGTGCGAGCTGAGAGCGAGCGTCTCCTGTCTGAGAAGACAGACAGCCCTCAGAATCATGCAGAGGAGTTGGAGACGCTGCTCTCCACTGTAACATCactgactgaagagagagaccagctccaGGAGATTCTGGGTGGagtcaagagaggagaggaaccagCTCAAGCGAGAACTGGAGGAGAATGTGGAGATGTCCATCAAAGTCGAGGAGGAGCTGAAACAGCAGCAACATCTCAACTCTGAGCAGCAGGCTGAGACAGAACAACAAACAACTCAACTTCAGCAACAAATACAGTAGCTAGAGGAGGAACACGCACACATGAAAGATGAGAGAGCCCAGCTTCAGAGATCTTCTGGAAAATATGGACATGGTCATACAGGTCCAGAGGACATTAGAACAGCAGCAACATCTGAACACAGAACAGCAGGCTGAGAGAGAACAACAAGAGGCCCTACTTAAACAACAAGTCCAGCTTCTTGAAGAGCAGTTGAAGACGGTGAAAGATGATAGGAGCCAGGTGAATAGCAACATTCAGGACAGTATGGACATGATGCTCAGTGATGCAAATGCAACCATCTCCATATTGACAGAACAGTTCAATAACATGGAGCGCGAAGTGTTTTACCACTAGCGAAGCAGAGGGAATTTGCTCCAGATGTATGCCAGGCTAATCCTTGTATGCCAAGGATTACAAAACACACTTTGAAGCCCTGGTCCTGAATGACTTGGCTGTATTTGAGGAGAAGAGACTGCAGCACCTGCTCATCTGTAGAGCCTAGGCACCCAGTCACTCAGTCAAGGTGGCTGAGAACAAATTTCTTGGAGTCTGGGACCAGAAGCTGAGCTGCTGGACAAGAGTCGATTACCTCCAGCAGTGGTGTCAGAGGAGCTGAGGGTGTGAGAGAGGAGCAATGAGGAGGCTGAGTGCTCTATGCATGGTCCACTCACCTGGCTCGTCAGCTGTGGAGAGCTTCCTGGCTCGTCAGCTGTGGAGAGCTTCCCGCGGCAGAGCTGGCCCGGCGCTCTGCCGTGGCACAGGCCAACACACGGGCTCTCCAGGAATTGTGAGATGAGCACCGTGGTCTGCTGAAAGAGCTAGGTGTGGTCCGAGCACAGGCTGACAGTCAGCTGAAAGAAGAGCGGAGTAAGACCTTTACTCTACTGCAGATACTGGAGAATGACCCAGTCAAGACTGAAGCTGACCAGCTGAGGGACAACCAGCATCTTGCCATGTAATGTCAGCAGTTGGAGGGAGAAATCAAGGAAATGCAAATGAGAGTTGAGCACCAGATTAAAGCTGCTAATAGGGTCTCAAACCACAAACAAGCCACCCAGCTCCTACGAACTGAGCTTCAGGATGCTTGTGCACAAGTCAAGGATAGGGAGGGCTCTATCCAAATCCTCAAAGAGAGACTGACGTAGGAGTTGGAACAAGGTTCTGGCCAAGAGAAGAGCATCGCCTAGTGTCTTGAGCTTGAAAAGCTGAATGCTAAAGTTGTGAAGATGGAGATGACTTCATTGTCCTCTAAACACCAAGAAGAgttactgagGATGACCACGCTCCTGAACCACAAGGAGGACGCTCTGAGGACGCTGAAGGAGACTCTGAGAAGATCACAGCAGGAGGGAGAACAGTTATTCATGGGGGGAGAGGATCTGCATGCCAGACTGACAACCACCAGAGGACGTACGGTCCAAAGCAACATTCTCCTTGAAAAGAACAAACTTGAGGAAGTGAAACGGCTACAAAAGAGAATTTCTGAATTGCCGTGTTTCCACTCAGCAAGGAGATATTTTCAAGTGGAAGGCTTGAGCAGTTaagctgaaggagaggagggacgtGGTTGAAACGCCTCCATCTGCATGTACTCATACAAAACGACGCCTTCCCATGACTTCTGAGGACCTCAACTCTCCCAAGAAGTTCCTCGACTCGCCCAAGAGAAAGTTCTTTGATGTCCGTCCAGGCTCTGAATGTCAATTAACTGTCCCAATCAGTTTTTTGATAACTCCAACCTTGGAACCGTTCAAGATGCAACTGTGGATTAAAAAGGAGGAATGGTGGCCTGTCACCAAAGCAAGCTGATCTATGCAAACAGCAGTAAATGATTTACCTAAATTGCACTTATCATTCATTGTTTATCTATTTTTCAATATTCAAAGTGTTTGTTTTCATATTGTATTTGATAGCCTTATATTTTAAAATAAAGAGCAGTTTATTTTAATAAGACTCAACTTTACCTGCTCTCTATGTAATAGGACTTTCAGTTGTTCTGACAGCAGATGGCATGCTTACACCATTTAGTTTGAGAATGTTTTATTTTGACAATGATGGAGGATTTTAAACTTGGTGTCTATGCAAAGTGGTCTTGATGTTCAGTTTCTCCCATTAATAATTTTCAGACTAATGCTTTTACATTTTTAACTGTAGATTGCCGTTTTTGAGGATATTGTACATTCATGGCTCCATTGGAAGTGCTTCCTAATTTCAGAGTTTGGAGTTGTCTAAAGGGATATCTGTTACATTTTTGAAGATGGAACATCACTAGGGTAATTTAGCTATATGGCAGAATTAAACTCAGAATTATTCTAAATAACTGTATTTGCCTGTATGTTGTGCAGGTAAACAGGAGGCCTGACTCGGTCCACTTAGACTTGGGTCTCAGTAGCTGCCCCACAGCTACATTCTCTTGGTCGCTTCCTCTGCATGGCTTCACATTTCATTTAAGAGGGTGCAGAAACCACATtcttcctgttctctctgttgGGATTACTGTAAGAATGGTACTAAGCCTTCAGAAGGAGTACTGGCACCATGGTAAATAACCTTTAGAGTTCTGTAGCacatcatcaaaggtaatttGATCACAGGTTCCCAAATGGAAGGGAATTAAGTGATGTTTTCTGACTGCCTGACAAAGTAAAGAAGACAGATCTTAAGATACACGGAATGCATTACTTAATTTGTACTCCAAGACATTCCAGTGACTGAGCCCTGCATACTTATCATGCAGTAGTTTTCTGTAACCTAATGACTGCACCAGCTAAAAAGACACGACCGATTGGGTATGAAAGTGCCACAAGACTGGTAGACTTCTGAGCTGAAGTCTCTGCATTATCTTTGAGAGTTAACAGGTTCAGGCAAGATTATTCAGTACACATGTGCTCCAAAAGTTATTTTCATTAAACATTGTGATGCCATCGAGgctgaaatactttatttaccaAAACCTCTAGCCGGAGAGGAGTAGTGGTTTTCATTATTTCACAAATATCAACATACAGTAACTGTCAAATCTGGAAATGGAAGAGCTGAAGTCTGCACTCAGATTATCAACAAAATACACTTTCCCCAAGCTTCTCTTGGACACCTAACTCATTAATAGTATTATTAAGACTTGGTATCTTTTGATACTTTTGTTCCAAGGATATCACAATATTGATGGTAAATAGGTTTGCCAGTTTTCTACAGGGCTTTTCTTATGTAGGCAATACAAGAAGAAGATGGAACACAATTGGTCAGAAAAAGAACAAAGTCCTTGTGAAGAAGTTCAAGAATAAAGGGAGACCTTCTTAAAAGGGAATTACAGTCTCAATACTGAACCAGTCATTCCTCAAGCACAAGTTGTCGGAGTAGCCCTCATTGCAATTAAAGTAAGCAAAAGTGTCAAAGTTTGAACCTCTCCCGGCAGCCCACCTAATTGCTGAGGTGGCTTGTTTCATCTAATAGTATTATTTGTATATTTCCATAATGTGTTACAGTGGGAATCATCCAGGACAGGTCTTTCCCTTGTTCAATTATTCAGGGCTCAGTCACAGACAGTCATTAAAGTTTCATGGGAGGCAATTTGGAGGCAGTGCTGGTTGCTTTAGAAAACAAAAAGCCCTCTCTGCCTTTGGAAGTGCATGTTGTGAACTTGTGACAGAGGTAAAATGAAATTCATAATTACATTTGTGGACTATTATTGACCCAGAAACTAAAAGGTGGAATTGTATGGTGACCAAATGTATTTGATTAGGTATGTCACTCAAAGTTCTTCTCAAATATAGCAAGTTTTTTAAGTTAACTAATTTGCTGTATGAGACTGAGGAACACATCCACAAAATAGTCAGGAGTTCTCAAGACAACATTTAATACTGATGCACACAAATAGATGCTCCAAAAAGTTTGTTTCCTTATAATTGTCAGATTTAGAAATGTATTCTTGCCAGTGCTTAAAAACTAAGAGGTAACATGCACACTTAGAAATAACACTTGTTTTGGGAAATACTAATATTACAAACATATTACTTTGATCATTCTGCATGCCTTGAATCCTCTTAACAGCAAAATCACATGCCCACATAAATATCCTTGAGTAGAAAATGGGTCATGTAAGATTTTTTTAGGGAGGTAATTAAAACTTTGAGTGTATGTGGCTTGACATGGGATAATACATACACAACAGCAGCTTACTGTAATACTTTGCTGGTAAAGATTAGGTTGGAAAATATCTGAATCTTCTAAATAAAAATTTGTTTTTAGAGATTACAAATATTTTACAAATAAAACGCAGTGCTCTAAATTGCTGACAGAAATCTTACCGAGATGGGAAAGGAAGTAAAAATGACATTCTTTCTCAATCAAGGACAGTTAAGTTGTTCAGTAGAATTGCAACAGCAATATTCAAACATGCACAGGCCAGGGACAGTGCATGACAGGCAGTCCTGGGCAGGCCAGTTTCTCTCATGAATTCACTGTTAAAGatgtttgaaaatgttttgtaGGAGGACCATCATACTACATTTTCTTCTCTATTAAAGTCTGAATAAAAGTCAAGTCTGAATATGTTTATTCACATTTACTCCTACAATAGGTCTTGATATTGTTCCTTTAAGGCATGTTTTCACGTCAGTGGCTATTTTAAGGATTTTAGGCTTGCTCTATTCTTAGCGCCAACTCACACTGGTAGCATGACTACTTGCAGTGTTTTAATTTCCAATTGTCAGGGTATAAATATTCCATTTGCTCTGGGCTCCATTCCCAGAATAAGATGTGAATACATGAGCTGAATTAGACTTTTTAAAACCCTGTTTACCAAAATAAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU557869 lncRNA downstream 64941 26608848 ~ 26648515 (-) True LOC110525621
TU557834 lncRNA downstream 168870 26543490 ~ 26544586 (-) True G490886
TU557796 lncRNA downstream 178004 26481087 ~ 26535452 (-) False LOC110525619
TU557501 lncRNA downstream 245125 26467521 ~ 26468331 (-) True G490621
TU557495 lncRNA downstream 247177 26466002 ~ 26466279 (-) True G490616
TU557963 lncRNA upstream 22216 26746242 ~ 26750563 (-) True G490978
TU557969 lncRNA upstream 31754 26755780 ~ 26818625 (-) True G490982
TU558017 lncRNA upstream 98867 26822893 ~ 26823157 (-) True G491027
TU558441 lncRNA upstream 315018 27039044 ~ 27039874 (-) True G491417
TU558505 lncRNA upstream 385348 27109374 ~ 27110138 (-) True G491475
XM_021605905.2 mRNA downstream 2058 26642261 ~ 26711398 (-) False LOC110525621
XM_021605903.2 mRNA downstream 149126 26553538 ~ 26564330 (-) True LOC110525620
XM_021605902.2 mRNA downstream 164050 26535028 ~ 26549406 (-) False LOC110525619
XM_021605900.2 mRNA downstream 182624 26502944 ~ 26530832 (-) True dpysl2a
XM_021605898.2 mRNA downstream 255573 26455731 ~ 26457883 (-) False tmem230b
XR_002473788.2 mRNA upstream 2226 26726252 ~ 26732944 (-) True LOC110525623
LOC110525624 mRNA upstream 14253 26738279 ~ 26740643 (-) True LOC110525624
XM_021605910.2 mRNA upstream 104132 26828158 ~ 26876043 (-) False LOC110525627
XM_021605911.2 mRNA upstream 104132 26828158 ~ 26876043 (-) True LOC110525627
XR_005052451.1 mRNA upstream 153296 26877322 ~ 26877454 (-) True LOC118965120
TU557799 other downstream 161829 26547222 ~ 26551627 (-) True LOC110525619
TU557449 other downstream 255615 26455732 ~ 26457841 (-) True tmem230b
TU557298 other downstream 430287 26279707 ~ 26283169 (-) True LOC110525606
TU556319 other downstream 1215967 25496963 ~ 25497489 (-) True G489511
TU555826 other downstream 1606886 25106205 ~ 25106570 (-) True G489038
TU558306 other upstream 100841 26824867 ~ 26867158 (-) True G491291
TU558571 other upstream 492581 27216607 ~ 27244193 (-) True G491539
TU559251 other upstream 1010970 27734996 ~ 27736978 (-) True LOC110525653
TU559292 other upstream 1103205 27827231 ~ 27835302 (-) False LOC110525655
TU561692 other upstream 2687189 29411215 ~ 29415314 (-) True G494389

Expression Profile