RNA id: XR_002473788.2


Basic Information

Item Value
RNA id XR_002473788.2
length 3108
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC110525623
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 26726252 ~ 26732944 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caggccttattcctaaaataaaatctcaatttcagcttcaatttttttgtaagttgttgaatatgcaatttaaaagagaggccgtcatcaattaaaatccCAATATATTTATGAGGtaacaacctcaatctccttgccatTTTATCTCCAAACGAGTTGAACAAATTGTCTGAGAAGGTGTCCCGTCTGGAGATCCAGCTGTAAAATGAGGCTCGGCAGAAGCAGGAGGCCATGGAGAAAGTGGAGACTTTCGAGAGGAGGGTTGCCGAACTGGAGATGCAGTTAGAGAAGTTGCAAATGCCCACTGATGCACAGCTGGAAAACGAAGTTCAGCAGAACCAGGAGGCCATGGAGAAAGGGGTGGTTTTTGAGAGCAGGGTTGCTGAACTAGAGAAGCGGATAGAAGAAAAGTCACAAATGCCTGCTGATGCGCAGGAGGCCATGGTGAAGGTGGTGACTTTTGAGAGGAGGGTTGCTGAACTGCAGAAGATGCTAGATTTCCACTGACTCACAGGAGCAGGTTGGCTATCACCAATGCCTTCTCACTGGTTTATCGTGCAGAATGTCAGAAATCATTTAATCTAAATGCAAAAATGGTCCAACTGTCATTCTTTACAGATGAAAAGGGGATTTGAGGAGACAATTCAACTCTGAGACGTTGGTGTCTGAGAAGGAAATGGCTGCTGCTGAGTGTGATTATCTCAAGCAGGAGCTCAACATTCTAATGGGATGGACTAAAAACTTGAAGAAAAGGCTGCACTTCTtcaggagatggaggagaagaaagagatggATGAGTTCAATTTTCTGGAAGAGGAGAGCAAAAGAGAACGAGAAAGAACTACTGAATGAAATGTCCTTAAAGAAGGCTGTGGAGGCATCTAGATGCAAATCTCAAGAGCTTGAGGCTAATCTGGTGGCAATGTCAGAGGAGCTGAAAAAGAAAGATGACTGGGCAGAGGAACTACAAAGATCGAGTGACATTGACTTGGTCCAACAAATGAAGCAGCTGCGACGCACTCTGGACGATGCTGAGGGACTGAGCTGTGACACTAAGAAGGAGTGGGCCCACCTGCGCAGTGAAAATATCTCACTCAAAGAGAGGGATGTGTCTTCAACCTCAGTGTCAGTTTGCAGCCTGTATTTAAATGCAAACTGCGCTCAATGGATTGACCATTATCGTGTTGCATTAGCTTTAACTCTATGCCTTGGCCTAGCTTTCATGTCACACTAACTGCTGGCTATGAGAGGATGGAAGCTGAGGGGAATGGCCTTAGCTATCAGTTGGAGACAGAAAAATCACGCTTCAAAAAGATGCAGGTTGACCTTCAGAGGGAGTTACAGGGAGCCTTTGAGGAGAACACCAAGCTTACTACTCTCCTGGATGGAAAAGCTCCGAAAAATCTCATAGACAGCATTGAACTTGAGAAAAAAAGTTACTGACCTGAAGAAAGAGCTGGAGAAGTCTCATGAAGATGAGAAAACCCTACAAGCTAAGATCAAGGATTTGAGTCCACTGCAGGATCTTCCAGATaaagtggacagtttgatgaaGCAGGTATATGTCCTCAATGAGGAGTTGTGTGCAGTCCAAATAGCGAGGGAGAGCCTGGGTGTCTGCTAAGGAGGAAGCTCAGCAACTCAGAACATTTCCAGAGCTCCCAGGAGCAGCAAGTCAAACTGCTAGATGACCTGAGTGAAGCAAAGTTGAGGGAAAACGACCTAACCCATCAGTAAATCGACATCACTGAACAACTGGAGACTCTCCGTAAGGACTTGGTGTGCTCGTCTGTGGAGAACAGTCAGCTTCTTACTACTGTGGAAGAGTCCAGCCTGAAAATAAGGCAACTGTGAGGAGCTTGAGTCTGCGATCTGAGTGAGATAATCTCCTGTCTGAGAAGACAGACAGTCCTCAGAATCATGCAGAGGAGTTGGTGCTCTCTACTGTGACCTccctgactgaagagagagaccagctccaGGAGATACTGggtggagtcagagaggagaggaaccagCTGAAGAGAGACCTGGAGGAGAATGTGGAGATGGTCCAGGCAGAGCTAAAACGGCAACATCTGAACTCAGAACAGCAGACGTGGCCAACAAGATGATCAACTTCAGCAACAAGTCAGTGCCAGTGTCTTTTATACGAGAAGCAGCTGAGTGAGGAGCTTGAGTCTGTGTGAGCTGAGCGAGAGTGTCTTCTGTCTGAGAATACAGACAGCCCTCAGAATCATGCAGAGGAGTTGGAGAAGCTGCTCTCTACTGTGACCTCactaactgaagagagagaccaggtCCTGGAGATACTGGGggaagtcagagaggagaggaaccagCTCAAGAGAGACTTGGAGGAGAATGTAGAAATGAACATCAAGAAGCTCAACTTCAGCAACAAaTACAGCAGCTAGGAGAGGAACAGGAAACCATGACAGAGGAGAGGCGTCAGTTGAAGGGTGACCTGCAGGAAAAATATGGAGATGGCTGAAGAAACCCAGGGACTTCCCTTGGATGGAATGGAGGAGCTCTGACAACAGAGCCAACTGAACTCTGACCTTGAGAGGCAAAGTTTACAGAAGGAGTCTATTCTAGAACTGCAGCTAAGCAGCTGAGAGAGGAGGTTGAATCATTGCAAGCTGAGAGAGAGCATCTCCTGTCTGAGAAGACCGATAGCCCTCAGAATCATACAAATTAGTTGGAGAAGCTGCTCTCCACTGTGACCTCactgactgaagagagagaccagctccaGGAGATGCTGGGGGGagtcacagaggagagaaaccAGCTCAAGAGGGACCCTGAGTAGAATGTGGAGATGATTATTTGAAAACCAGGAGGAGCTGATTCACCATCAAGAGGAAAATATTAAACATATGGATACTGCACATCTGTTACATCTAGTTGAACTGCAAAGTCAGaagtcaacaaatgagagcgcctgggttaacctctacatcacccaaggaacagagaaggagtaggatgagggtatcCGGCAAAAGGGAAGAACAGCCGAGAGCTGCCAGTGGCACGAGCGTACCagacaaggccgcggggccagatggattaccagaacGTGTAGTACAAGCATGCGttaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU557869 lncRNA downstream 77737 26608848 ~ 26648515 (-) True LOC110525621
TU557834 lncRNA downstream 181666 26543490 ~ 26544586 (-) True G490886
TU557796 lncRNA downstream 190800 26481087 ~ 26535452 (-) False LOC110525619
TU557501 lncRNA downstream 257921 26467521 ~ 26468331 (-) True G490621
TU557495 lncRNA downstream 259973 26466002 ~ 26466279 (-) True G490616
TU557963 lncRNA upstream 13298 26746242 ~ 26750563 (-) True G490978
TU557969 lncRNA upstream 22836 26755780 ~ 26818625 (-) True G490982
TU558017 lncRNA upstream 89949 26822893 ~ 26823157 (-) True G491027
TU558441 lncRNA upstream 306100 27039044 ~ 27039874 (-) True G491417
TU558505 lncRNA upstream 376430 27109374 ~ 27110138 (-) True G491475
XR_002473785.2 mRNA downstream 2226 26713456 ~ 26724026 (-) False LOC110525622
XR_002473786.2 mRNA downstream 2226 26713456 ~ 26724026 (-) False LOC110525622
XR_002473787.2 mRNA downstream 2226 26713456 ~ 26724026 (-) False LOC110525622
XR_005052047.1 mRNA downstream 2226 26713456 ~ 26724026 (-) False LOC110525622
XR_005052048.1 mRNA downstream 2226 26713456 ~ 26724026 (-) False LOC110525622
LOC110525624 mRNA upstream 5335 26738279 ~ 26740643 (-) True LOC110525624
XM_021605910.2 mRNA upstream 95214 26828158 ~ 26876043 (-) False LOC110525627
XM_021605911.2 mRNA upstream 95214 26828158 ~ 26876043 (-) True LOC110525627
XR_005052451.1 mRNA upstream 144378 26877322 ~ 26877454 (-) True LOC118965120
XM_021605918.2 mRNA upstream 150919 26883863 ~ 26888305 (-) True LOC110525629
TU557799 other downstream 174625 26547222 ~ 26551627 (-) True LOC110525619
TU557449 other downstream 268411 26455732 ~ 26457841 (-) True tmem230b
TU557298 other downstream 443083 26279707 ~ 26283169 (-) True LOC110525606
TU556319 other downstream 1228763 25496963 ~ 25497489 (-) True G489511
TU555826 other downstream 1619682 25106205 ~ 25106570 (-) True G489038
TU558306 other upstream 91923 26824867 ~ 26867158 (-) True G491291
TU558571 other upstream 483663 27216607 ~ 27244193 (-) True G491539
TU559251 other upstream 1002052 27734996 ~ 27736978 (-) True LOC110525653
TU559292 other upstream 1094287 27827231 ~ 27835302 (-) False LOC110525655
TU561692 other upstream 2678271 29411215 ~ 29415314 (-) True G494389

Expression Profile