RNA id: XM_021605918.2


Basic Information

Item Value
RNA id XM_021605918.2
length 3852
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110525629
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 26883863 ~ 26888305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagtgcatTCATAACAATCCGAACATTACGAAACTTCTGTTCGATCAAATAAGCCTGGTAACaaattagcaattacattttttgttgaccaaaaTCGACACTTTCATTGACCACTTCGTGGTCTTATTTTCGTGGAAAGATTTGGGGCAGAGTAaaccctctcgcttcgcctcttcttCTGGTTTACCCAATGGCAAAGATACATAGGAGTCAGGTTAGGTTGTGGGCAATGGGCATCTTTGTCCATGGTTTACCCAGAACATTTATCTCAAACCAGAGTAAATCATCTTTGGTGGGGTGTGGTGGTCTCTGTAACCAAGGCAAACTGATTTATGCAGCAGTAACCTGTTTTGGGACTATGGGGTTGGGACTACAAGGATGCTTGAAATGATGATTCACAGTAGTGATTTGTATTAGCTGTAAAAACCCTCCATGCTTGATTACCTGTGAATCTGATGTGAGAAATGGCATGGTATATCTACAGAATAATATGAGTACATGTTTTTAGAGAATTTAGACGTTTTTACAAAAATATCATTCACAACACTTAATTTTATTGATAAGGCTTCCTCTTAGTGGAACTTTAAATATACATCAGTTAGATCTGTGAGCACTTGTATGGAGTACCTGGTGCCTAATCAGAATTTTCATGAAAATATCATTACATTCACAACTTTTAATGGTCTTCATAAAGCTTTCTCAAGACATGAACTTTAAATAGACATGAGTTAGAGGTTTGAGAGCTGGTATGGCATATTTAGAGTCTGAGTAGCTAGATAGAGGGAAACATCTTTAGATGATTAATTGATTTTCATAAAATATAATTACATTCACAATTTTAAATTGTCTTCAAAAGGCTTCCCGAAGCTGTGACCATTGTGTATAAATTGTTTTGGAGTCTGTGCGAGGTTGCATATATAGACTAGAGCCTTGTCTGAATAGCCAGATAAAGGAAATTGAAAATTGAAAATTCAGGGGATAGCCCAAATGGGTTTCAAACCCAGAAACTGTCAGTCCAGTAGTACTGTCACCATAAAGCCTGAACTAAGGGCTACATAAAAATGGCAAAGGTTTTTAATACTGATACAAATGTGGAGCAAAAGCTAAACATACAAAAATGAGGTTCAAAATGAGTCACTGCAGTGATCTGGACTCACACAGTTGTAGGGTAGTGGCAAAATGGTGCAGTGCTGTGTCATTGTTGGCAAAAGTCTTGCTCCCTCAATTGCCAGCGCTGTAGTTTAAAGCCTCTGCAGTCACCTGATGCACTGCTgagattttgtttgtttttaggggCTAATGGTAATATTTGCTATTCATCGTGTTTCAGAGAGATAGACATGCTTCTCAGCTAAATGTATATTTTGTTTTCTCAGACTGTCCTCATTGCCCTCCGTCTCTCCACTGCTTATCCCCGCCCCTTATCACTGCTTATCCCCGCCCCTTACATCTCTCTCATTCCCTTCCTTAACAGCTCAGACTTGGCTGGCTGACGCTATCATTGATCCCTGCTGTCAGTGCTCTAAAAAAATGTTTGCGTCACAGTCATTACCAGCTCTATAAAAGATACAGTGATGCAGATTCCACTGTGTCGACCCAGCAACTCTATTACAGTTAGAGCTGCCTGTTTCGCAAGTCATGAGTTCCATTGCTTACGACCCTTACTTTCCCTCCTCTTCCCACAAGAGGAGGGTGATGCTGCGCAGTGGAGGGTATGGAGACAGTGCGGGAGGGATGGCATCCAGGTCTGTGTATTCCAGCCACTCTGCCCCCCTCTCATACCATGGGTCATCCCGACTGCATTACCCAACATACAGCCGTAGCTCCTCCATGCTGCTGTCTACCCCCAGATCTGCTGCCGCTGCTGAACTCGACATCAGCCAGGCGGTGCAGGTGAGCACTGAGTTCAAGGCCGTGCGGACGCAGGAGAAAGCCCAGCTACAGGAGCTGAATGACCGCTTTGCCAGTTTCATTGAGCGCGTCCACGAGCTGGAGCAGCAGAACAAGGTGCTGGATGCTGAACTGCTGATCCTCAGGCAGAGGCATGGCGAGCCCTCCCACCTCAGGTCCCTGTATGAGCACGAGATCCGCCAGCTCCGTGCTGCTGTGGAGGAGGCCCGCGATGAGAAACAGGCTGCCCAGAACCACAGGGACCAGATGGAGGAGGTGCTGCAGAGTCTGCAGGGACGTTATGAAGAGGAGGTAGTGAGCAGGGAAGAGGTGGAGGGGCAACTGATGGATGCCAGGAAAGGGGCGGATGAGGCTGCTTTGGGCCGTGCTGAGCTGGAGAAGAGGACGGAGACGCTGCTGGATGAGCTGGCCTTCCTGAAACGTCTCCATGAGGGGGAGATAGCTGAGCTGCAGGCACAGGTGCAGTACAATGCCCAGGTGTCCGTGGAGATGGAGGTGGCCAAGCCAGACCTGTCTTCAGCCCTCCGAGACATCCGTGTCCAGTATGAGAAACTGGCACATCGCAACCTCCAGTCAGCCGAGGAATGGTTCCGCAGCAAGGTGAGTGTGATGACAGAAGGCACCGCCCGCAACACAGACAACATTCGCAATGCCAAAGAAGATGCCGGGGAGTACCGCCGCCTGATTCAAACACGGAACCAGGAGATTGAAGCCTGCCGTGATAGGAACCAGTCCCTGGAGAATCAGTtacaggaggtagaggaggaacaGAGTGCTGAGATCGCAGCCCTACAGGAATCAATTGGCCAGCTGGAGGATGAGTTGAGGACAACCAAGAATGAAATGGCTCAGTACCTGAAGGATTATCAAGACCTCTTGAATGTTAAGATGGCTCTGGACATCGAGATCGCAGCTTACAGGAAGCTGCTTGAAGGGGAGGAGAATCGCTTCAGTGCAGTAGGACCAGGGACAATGTCCAGTGTCTATTCCCAAAGCCTGTGTGTTGCCCCATCCCGCAACCGCCCCATGTTTTCCATGCAGTCCAGCCTGACCTCTGGTGCCCCCTACCTACGCATGTACAGCTCatcattctcctctgcagatgaGATTATAGCTGCTAGTCAAGCACAGCCTGCTGAGTCAAGTcctcaggaggaagaggaggaggaaggagagaagggagacgaGGAAGCAAAGGAAGAGGATGTTGAAGAAGAGAAAAAAGCAGAAGATGACAATGGAGATATGAaggaagaggcagaagaggaggCTAAAGAAAATGGAGACGATGGAGGAGATGAAAACCAAgaaggtagagatggagaggaggatggagccAATGAAACAGAAGAAGGGCATGATAAGGGAGAAGAGGATGAAAGCAAAAAGGAAGTAGAAGTGGCAGAGGAAAAAGAGAAGCCAAAGGACAAAAATATTTAAATCAAGATTCTTATGAATGACACATTGATTGTCCCATATTGAGGTGCTCTACAAAAAAATCCATTAGTTCAGTACAATCAATCAGGAAACCATTGCATACAGCAGAGGCCTTTATGTTTGTGTGCAAAGAGGTAGTATGGCTGTACACTGAGTGAAGCAAAACATGacagtgtatgcatgtgtgtgccaGCAAGGCGATAAATAATAAAAAGCAAATACCTGTATATGAAATACATTAAAATAAATGCAATATGAGTGCTCTATGGGTGAGAGAAATGAGAAAGAATGTGTGGAGTTTTGTGAGcaaatactgtattgtattagcCTAAGAAATATTTGTTTGAAAAACCTATGTGCATTTCTGTCACCACAATATGCAGATAAGAACACCACTGTGTTCAATATACTTGATTTTCAATGCCTTAGACATATTCTTAGTGGGATCAattatgtactgtactgaacacaAATAAAGACTTAAAACATGTCCATCTGAATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU558017 lncRNA downstream 60706 26822893 ~ 26823157 (-) True G491027
TU557969 lncRNA downstream 65238 26755780 ~ 26818625 (-) True G490982
TU557963 lncRNA downstream 133300 26746242 ~ 26750563 (-) True G490978
TU557938 lncRNA downstream 154379 26707102 ~ 26729484 (-) True G490963
TU557869 lncRNA downstream 235348 26608848 ~ 26648515 (-) True LOC110525621
TU558441 lncRNA upstream 150739 27039044 ~ 27039874 (-) True G491417
TU558505 lncRNA upstream 221069 27109374 ~ 27110138 (-) True G491475
TU558465 lncRNA upstream 249851 27138156 ~ 27140754 (-) True G491435
TU558522 lncRNA upstream 256574 27144879 ~ 27145306 (-) True G491492
TU558527 lncRNA upstream 265401 27153706 ~ 27192358 (-) True G491497
XR_005052451.1 mRNA downstream 6409 26877322 ~ 26877454 (-) True LOC118965120
XM_021605910.2 mRNA downstream 7820 26828158 ~ 26876043 (-) False LOC110525627
XM_021605911.2 mRNA downstream 7820 26828158 ~ 26876043 (-) True LOC110525627
LOC110525624 mRNA downstream 143220 26738279 ~ 26740643 (-) True LOC110525624
XR_002473788.2 mRNA downstream 150919 26726252 ~ 26732944 (-) True LOC110525623
XM_021604982.2 mRNA upstream 362753 27251058 ~ 27252377 (-) True LOC110525021
XM_021605944.2 mRNA upstream 382516 27270821 ~ 27278551 (-) True LOC110525638
XM_021605946.2 mRNA upstream 454640 27342945 ~ 27351871 (-) False LOC110525639
XM_021605945.2 mRNA upstream 454640 27342945 ~ 27351877 (-) False LOC110525639
XM_021605947.2 mRNA upstream 454640 27342945 ~ 27351884 (-) False LOC110525639
TU558306 other downstream 16705 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 332236 26547222 ~ 26551627 (-) True LOC110525619
TU557449 other downstream 426022 26455732 ~ 26457841 (-) True tmem230b
TU557298 other downstream 600694 26279707 ~ 26283169 (-) True LOC110525606
TU556319 other downstream 1386374 25496963 ~ 25497489 (-) True G489511
TU558571 other upstream 328302 27216607 ~ 27244193 (-) True G491539
TU559251 other upstream 846691 27734996 ~ 27736978 (-) True LOC110525653
TU559292 other upstream 938926 27827231 ~ 27835302 (-) False LOC110525655
TU561692 other upstream 2522910 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 2590350 29478655 ~ 29483346 (-) True LOC110525681

Expression Profile