Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021604982.2 |
| length | 1105 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 2 |
| gene id | LOC110525021 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 27251058 ~ 27252377 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| K09348 | NKX3-1; homeobox protein Nkx-3.1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU558527 | lncRNA | downstream | 58700 | 27153706 ~ 27192358 (-) | True | G491497 |
| TU558522 | lncRNA | downstream | 105752 | 27144879 ~ 27145306 (-) | True | G491492 |
| TU558465 | lncRNA | downstream | 110304 | 27138156 ~ 27140754 (-) | True | G491435 |
| TU558505 | lncRNA | downstream | 140920 | 27109374 ~ 27110138 (-) | True | G491475 |
| TU558441 | lncRNA | downstream | 211184 | 27039044 ~ 27039874 (-) | True | G491417 |
| TU558634 | lncRNA | upstream | 64501 | 27316878 ~ 27317100 (-) | True | G491598 |
| TU558638 | lncRNA | upstream | 67752 | 27320129 ~ 27320361 (-) | True | G491602 |
| TU558639 | lncRNA | upstream | 68031 | 27320408 ~ 27320638 (-) | True | G491603 |
| TU559124 | lncRNA | upstream | 243800 | 27496177 ~ 27506760 (-) | True | G492067 |
| TU559201 | lncRNA | upstream | 348968 | 27601345 ~ 27601642 (-) | True | G492122 |
| XM_021605918.2 | mRNA | downstream | 362753 | 26883863 ~ 26888305 (-) | True | LOC110525629 |
| XR_005052451.1 | mRNA | downstream | 373604 | 26877322 ~ 26877454 (-) | True | LOC118965120 |
| XM_021605910.2 | mRNA | downstream | 375015 | 26828158 ~ 26876043 (-) | False | LOC110525627 |
| XM_021605911.2 | mRNA | downstream | 375015 | 26828158 ~ 26876043 (-) | True | LOC110525627 |
| LOC110525624 | mRNA | downstream | 510415 | 26738279 ~ 26740643 (-) | True | LOC110525624 |
| XM_021605944.2 | mRNA | upstream | 18444 | 27270821 ~ 27278551 (-) | True | LOC110525638 |
| XM_021605946.2 | mRNA | upstream | 90568 | 27342945 ~ 27351871 (-) | False | LOC110525639 |
| XM_021605945.2 | mRNA | upstream | 90568 | 27342945 ~ 27351877 (-) | False | LOC110525639 |
| XM_021605947.2 | mRNA | upstream | 90568 | 27342945 ~ 27351884 (-) | False | LOC110525639 |
| XM_036979750.1 | mRNA | upstream | 90568 | 27342945 ~ 27351891 (-) | True | LOC110525639 |
| TU558571 | other | downstream | 6865 | 27216607 ~ 27244193 (-) | True | G491539 |
| TU558306 | other | downstream | 383900 | 26824867 ~ 26867158 (-) | True | G491291 |
| TU557799 | other | downstream | 699431 | 26547222 ~ 26551627 (-) | True | LOC110525619 |
| TU557449 | other | downstream | 793217 | 26455732 ~ 26457841 (-) | True | tmem230b |
| TU557298 | other | downstream | 967889 | 26279707 ~ 26283169 (-) | True | LOC110525606 |
| TU559251 | other | upstream | 482619 | 27734996 ~ 27736978 (-) | True | LOC110525653 |
| TU559292 | other | upstream | 574854 | 27827231 ~ 27835302 (-) | False | LOC110525655 |
| TU561692 | other | upstream | 2158838 | 29411215 ~ 29415314 (-) | True | G494389 |
| TU561696 | other | upstream | 2226278 | 29478655 ~ 29483346 (-) | True | LOC110525681 |
| TU561743 | other | upstream | 2249876 | 29502253 ~ 29503391 (-) | True | LOC110525684 |
