RNA id: XM_021605944.2


Basic Information

Item Value
RNA id XM_021605944.2
length 4132
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC110525638
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 27270821 ~ 27278551 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACGTCAAAGGAAATCAGTGTACGGTCCAGGGTAGAGGAATAGCCGCATTGGGTAGATGGTACCTActtagtgatatatttacattgttGAAAACACGGCGCTGTACATATTCAGAGCTGTATGAACTATTAATAAGATAAGCAAGAAACACTATTCCTTGTATTTTGTTAGATCATCAGTGATTATTGAACAATGCCTTTGATGACCGGACTTTTTCTTCTAATGGTGCTGATTGCATCTGCATATGAACTGGATCAGAACGAGTCGTATTCACCCAGAAGAGCACGATTTTCTGCAAATACCCCTTCTGACGTGGCACGCTGTCTGAACAGTGCCCTCCAAGTAGGCTGTGGAGCCTTCGCATGTCTGGAGAACTCCACGTGTGACACAGATGGCATGCACGACATCTGCAAGTCCTTTCTGTACAGTGCAGCTAAATTTGACACTCAGGGTAAAGCCTTTGTGAAAGAGAGCCTCAAGTGCATTGCCAACGGCATCACCTCCAAGGTGTTCCTCACCATCCGCCGCTGCTCCACCTTCCAAAGAATGACCTCAGAAGTTCAGGAGGAGTGCTACAGCAAGCTGGATATCTGCACTATCGCCCGCACCAATCCAGATGCTATTGGAGAGGTGGCTCAGCTCCCAAGCCACTTCCCCAACAGGTTTTACGGTAAGCTCCTCCAGAGCCTGATGAACTGTGATGAGGAGACTGTGGACCTGCTGAGGGCCAGTATGGTGTCCAGACTTGGCCCAGAGATGACCATTCTCTTCCAGCTTCTGCAGAACAAACCCTGCCCCTCGGTTGCTGCTGCTGCCGTTCCAACTGGAGTGGAGGGCCGAAGGAGCTCACGGTTGTCAATGGGCCCACACATGTATAAGATCCAGCCTAGTCTACGCAACAGAGACTCTGCCAGCCATTTTAGCAAGAAGCGTGCCACTGGTGACAGCTCCTAACTCCCACTCAGATCCAGAAACTACACACACCCCTCAAAAACATAAGCCAACAGTGGTCTCTTCCCTTGGGTATTTAAGAATCATTCCTCTCCAGACTGGAAAATAACATGCACCTCTAAGAGAATATCCAATGTGTTTCAAGTATATTTTATATCAGAGTTTGAGTGTGAGAGATACTGTACCTAATGTTTGAGAGGATCCCCTCCCCTAAACTAGTTCCCAACTCTATCACTCACCAAGTTCATTgaacatgttgtattgtattctattgtatctCCACAACTTGGCCCTGTCCATTCCTGTTCACTCCCCACACTTGATATGAATTATCTGAGAGCCTAGTGGGATGATGTCCCTTTAAGTTTTCTGTCTAGGATTTCAAGCACAAACTTGCAGGTATGGTTCATATCTATAGAGCACAAATGTTACAAAAAAAATTGGGTTCAGAATACAAATGTTTATCCATTAATATAATATAAATTGATATGTCATCAATAGATAATGAAATGTGATTACTATTAGTTAATTACTAGATGTTTCATACAGTAAATGTGAGATATTTCTATATTATGATGAGACCATTAAAATAGGTAAGCATGTGCTATAGAAATCAGTGTCACATAGTCACTGACACAAACAGGATTCTTTTATTTATTGAGTTATTAGTCTCTGATGGCAACAGCCAGATCTGTGAGAGAGGCATGTCCCTCAGATGAGAGCTATCCTAATAAACTTTGCACAGGAAGTCACCTTAACTTGTAACCACCCGGAATGCCATGTAGCTAACTCCTATACCAGAGAATATAGCATTGTTTAGATGCCATTACATCTCTTCTGTCCTGAAACACTCAGTTCACAGTAAGTGTGTACCAGCAGTGTAACTTATGAGCAGGTGACCACCTGAGATTGATAGAGGCCACCCCATTAGATGAACAACATTCTCCCTGATGAATATGACATGGAGGGTTTGGATCATACACACTGACTTCCAGTGTTGATAATGACTATTTAAAAGCCTTGTTGGTATAATATTGATATTTATTTTCCTACTATATTATTTAAATTGTTATTTTATGATGTTGCTGTAGTTTTAGTTAGGTTACAGATATACAATTATAATGTGCAGTTTGGTCATAGCTTCTATTTCAGTGGGGGCTCATGATCAAATACTATAGGATCTGCCACTCTCTACATTGTCCTCTCTGTTGACTGAATAGGACCCATGTTATGACTCTGTGCTGGACATAGGGGAACAAGTTGGTCATTCAAGTCAGGTGATCTTCTTTATGAGTGTTACATGGGACTGTCACTTAAACAACCCATATTGCAAACATGGTCACTTATGTACTGGTGCAAGGGGACTCTGTTGggaatgtgtgtgtattttccAAGCACGATTGATTATGTTATGAAGGTAGAGAGAAATTGTGGTCAAGCCATTCATTGTACATTTAACAGCTAAACTTGAAGACTGAACTGCAAAGCATTTGCTGGATCTATCCTTAATATCATGCAAAATAATGTTTCTCTCAGAAAGGTTACCCTGGTGACATTACTCCATAAGTGCTTCAATAAAGGGAGGTTAATTCAAGAGACTTTTCACACATGCCTGGATGAAGGCGATGTGCACAAGGGGAAAATAATGTTAGAGAGATCTGGTGGGTTTACAATGCCAAATCATTTGAAATGTTAAGAACTCCCAAACCTATGCAATAATCTCTCATATGGAGGATTCACAATAACACACAACCTTGCCCTTTGTCACAAACAGTGCCAGCTGATGCTGAATGAATGTGGCAGCAGCTCATTTGCTCCCATACTCATAGTGAAGTATGCAGGCAATGCAATGTGCCCCTAGACTCCCCctttctgtttctgtgtttgttgcTGTGGTTTATGttgtattgttttttgttttgtctttttctTGGGATATAATAATATCTTGCTTTTAGTAGCAATATAGTGTATATTAAAAAGAAAAAGTAAGGAAAAAAATCACTCAAATGTTAAGACTGTATGAGCAATGTAGTGTATCTTACTACTAATGCTACATATGCACTTTGCATCTCTTATGACCACTATAAAGGGGCATTGAAACATTCATCACTTGCGATGGGTTGGGACTACTTCCTTCCTATACTGTTAATACATGTATTTCTGTGTCTGTAATAGCTGGACAAAATCCAAAACATTTGCTGCTAAACAATAGCTTGCTCCCCTGTATGATAGGTTATCATTTTACATTTACTTGGATATCTATGGTGAAAACCCATTCACAGACCCTGGCATCAATCTGTATACTTGCATTTGACCATTTTCATTCAGTTTGGTACTTCTTCTGGAATTTGTACATTTATTTGAATGTTGCTTGCAGTGAACATATTTGACAATAGTATTCTGTTTATTTCCTCTCCCTTGAGACTATGCTTATAAATGCAAAATCTGGGTAACTTTAGAGAATGTATCTTATATTGAATGTTTGTTCTGGTGAGGATGTGCCCAAACCTAGATGGTTCATTGACATATTTTATAATGTGTGTTTAGTTAAAGGTGCATAGTGTATGAAAGTCTGTAATAGGCAAATATGAGAATTAAATTAACAGACTTACAAGTCATATTTTGTTCTTTCGAGACATTTTGTTTTATTCATTAAGCTATTTGTTGCAAGACAAGAATAGGGTGCATTTTGGTGGTAGGCCTACTGGATTATTAGCTAAATCTATCCTTAGGGAAATCAGTGAAATTGGCAGCAGCGTTTTCTGTTGATACACCATATGTTTATGGCAGGCTGGGGACTGGGCTCCCTGAACTCTGGAACTCCATGGTACTCTCTCCCCTCAAGACTTGAAATCAATTTGCCAGAATTAAAACTACTTGGGTGATCAGTAAGAGTGAAATCTTAATCGTAGTGACAGTTACTTTACTTTCAAATTCATAGATGAAAGTTATCAGTAAGCCATTTGAGGAGATTACTTGCTGAAGTTCCGAATACAGTAGCTATGTTAAGCATGATTGATCCTTGTGAATCACTTGCACTTTAATACATACCCATCTACATATATACCCATTATGTATACATGGATGTATGGCTTTTTTCTCTGTGCTAAAAATATGAAAGATACAAATGCATCAACTGTGTGTCTTTGCTGATTAGAAATAAACTATTATCATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU558527 lncRNA downstream 78463 27153706 ~ 27192358 (-) True G491497
TU558522 lncRNA downstream 125515 27144879 ~ 27145306 (-) True G491492
TU558465 lncRNA downstream 130067 27138156 ~ 27140754 (-) True G491435
TU558505 lncRNA downstream 160683 27109374 ~ 27110138 (-) True G491475
TU558441 lncRNA downstream 230947 27039044 ~ 27039874 (-) True G491417
TU558634 lncRNA upstream 38327 27316878 ~ 27317100 (-) True G491598
TU558638 lncRNA upstream 41578 27320129 ~ 27320361 (-) True G491602
TU558639 lncRNA upstream 41857 27320408 ~ 27320638 (-) True G491603
TU559124 lncRNA upstream 217626 27496177 ~ 27506760 (-) True G492067
TU559201 lncRNA upstream 322794 27601345 ~ 27601642 (-) True G492122
XM_021604982.2 mRNA downstream 18444 27251058 ~ 27252377 (-) True LOC110525021
XM_021605918.2 mRNA downstream 382516 26883863 ~ 26888305 (-) True LOC110525629
XR_005052451.1 mRNA downstream 393367 26877322 ~ 26877454 (-) True LOC118965120
XM_021605910.2 mRNA downstream 394778 26828158 ~ 26876043 (-) False LOC110525627
XM_021605911.2 mRNA downstream 394778 26828158 ~ 26876043 (-) True LOC110525627
XM_021605946.2 mRNA upstream 64394 27342945 ~ 27351871 (-) False LOC110525639
XM_021605945.2 mRNA upstream 64394 27342945 ~ 27351877 (-) False LOC110525639
XM_021605947.2 mRNA upstream 64394 27342945 ~ 27351884 (-) False LOC110525639
XM_036979750.1 mRNA upstream 64394 27342945 ~ 27351891 (-) True LOC110525639
XM_036979754.1 mRNA upstream 267057 27545608 ~ 27560519 (-) False LOC110525643
TU558571 other downstream 26628 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 403663 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 719194 26547222 ~ 26551627 (-) True LOC110525619
TU557449 other downstream 812980 26455732 ~ 26457841 (-) True tmem230b
TU557298 other downstream 987652 26279707 ~ 26283169 (-) True LOC110525606
TU559251 other upstream 456445 27734996 ~ 27736978 (-) True LOC110525653
TU559292 other upstream 548680 27827231 ~ 27835302 (-) False LOC110525655
TU561692 other upstream 2132664 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 2200104 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 2223702 29502253 ~ 29503391 (-) True LOC110525684

Expression Profile