RNA id: XM_036979752.1


Basic Information

Item Value
RNA id XM_036979752.1
length 2464
RNA type mRNA
GC content 0.52
exon number 21
gene id LOC110525643
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 27545608 ~ 27560556 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGTCTGCAGCTGTACCCCTCTCAAGAAGAGGGGGGTTAAGGGTTACACTTTGGTGTGTTTGGTGTCGGTTGGTGATTTCGCTACTCCCGCCGAACTAGAAGACCACAATTTGAAGAAAATTGGGTGACCTAGATTTCGTTTAGctatgcATTTTCAGGAGTGGTTACAATCCCTTCGTACCAGTGGGGGGGTTTGAGGACCTGAAAACAAAGACTTCTGGAGCcttgtcccctctctccctttgtcgtcctctttctccttctcctccctctctctatccccatcctCTCTGCTGGGTATAGGGGCTCTGGCCTCCTTCACTGCATACTGGCTGGTGACTCGCCCTCGGCCCATGCGCCCCCCTTGTGATCTGAATGCCCAGTCTATCCCTGTACAGGGAGAGCCCAATTGGAGGCGTTCAGCTTTGCTCAAGGATGACGTTCTGTTGGAGTTCTACTATGATGACACCAGGACAGCCTATGACATGTTCCAGAGAGGACTGAGGGTGGCAGGGGATGGCCCATGCCTTGGCTTCAGGAAACCTGGGGAACCTTACCAGTGGATATCCTACACTGAGGTGGCTGAACAGGCACAGGTGCTGGGCTCTGGGCTTTTGGGCAAAGGCTGCCAACCAAACCCTGAGCAGTTAGTTGGAATATTTgcccagaacagaccagagtggatcatttCAGAGCTGGCCTGCTACACCTTCTCAATGGCTGTGGTGCCCCTGTATGACACACTTGGAGAGGAGGCCATGGTGCATATCCTCAACCTGGCTGAGATCTCCCTGGTGATCTGTGACAAGGAGGAGAAGGCAGAGTCCCTTCTGGGGAATAAGGAGAAGGGTGTGACGCCTACTCTCTCCTGTCTGGTGCTCTTCAATCCCTGCAGTGATGCCAtagtggagagggggaagaacTGTGGAGTGGAGATTCTTCAACTCACACAGATCATGgAACTTGGACGACAGAACCTCAAAGATCCTGCGCCACCCCAACCCCAGGACCTGGCAGTCGTGTGCTTCACCAGTGGAACCACAGGAAAGCCCAAGGGAGCCATGATCACCCACGGCAACATCGCCTCCAATTCCTCCTCTGTTATTAAGATCCTGGAGGGGTCATTTGTAATTCAGCAAGAGGACGTGTCAATATCTTACCTGCCTCTTGCCCACATGTTTGAGAGGATGATTCAGGTGTCCATGCTATGTCATGGGGCCAGGGTAGGATTCTACCAGGGGGATATCTCCCTGCTCATGGATGATATTAAGACTCTGAAACCCACCTTCTTCCCAGTGGTGCCTCGCCTACTCAACCGCATCTACGACAAGaTCTTAGGCTCCGTGACGTCCCCATTGCGCCGGGCAGTGCTGCACTATGCAGTGAGGAGGAAGCAGGCTGAGCTCAGCAGTGGGGTGGTACGTAACAACAGTCTGTGGGACAGGCTGGTGTTCAACAGGATTCAGGCTAATTTAGGAGGTAATCTGAGGTTCATCCTGACCGCCTCGGCCCCCATCTCCCCCACCGTGCTTTCCTTCCTCAGGGCCACCCTCGGCTGTCTGATCTTTGAGGGCTACGGTCAGACTGAATGCACAGCAGGCTGCACCTTCTCCATGCCAGGTGACTGGAGTGCAGgccaTGTTGGTGCTCCATTGCCCTGTGCCATGGTGAAGTTGATTGACATTCCTGATATGAACTATTATGCCAAGaacggagaaggagagATCTGTATCCGTGGCCACAGTGTGTTCCGGGGATACCTGAAAGATGAGGAGAAAACAACAGAGGCCCTGGACCGTGATGGCTGGCTGCACAGTGGAGACGTGGGCCAGTGGCTACCGAATGGGACACTTCGCATCATCGACAGGAAGAAGCACATCTTCAAGCTGTCCCAGGGAGAGTACATTGCCCCTGAGAAGATTGAGAATGTCTACATGCGTTGTGTCCCTGTGCTACAGGTCTTTGTGCACGGAGACAGCCTACAGTCTCACCTGATCGGTATTGTTGTGCCAGACCCAGAAGTGTTCATTGACTGGGTTAAGAAGAGGGGAATCGTTGGATCCTATGAGGAACTCTGCCAGAATCCAGATGTGAAGAAAGAAGTGTTAGAAGACATGACAGCCGTGGGGAAGGAAGCTGGGCTGAAGTCATTTGAGCAGGTGAAGGACCTGCACCTGCATCCAGAGATGTTCAGTGTGAGCAACGGTCTCCTCACCCCCACTCTGAAGACCAGACGAGTGGACATCCACAGGGTCTTCCAGGAACAGATCACAGACATGTATAGCACAACAGCCATCTAGAAGACCTCTATCCACTGTCACATGTTCACACACTCCaatgacatttacagttgaagtcaggaagtttacatacacttaggttggagtcattaaaactcgttttgcaaccactccacaaatgtcttgttaacaaactatagttttggcaagtcggttagggcat

Function

GO: NA

KEGG:

id description
K01897 ACSL, fadD; long-chain acyl-CoA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559124 lncRNA downstream 38848 27496177 ~ 27506760 (-) True G492067
TU558639 lncRNA downstream 224970 27320408 ~ 27320638 (-) True G491603
TU558638 lncRNA downstream 225247 27320129 ~ 27320361 (-) True G491602
TU558634 lncRNA downstream 228508 27316878 ~ 27317100 (-) True G491598
TU558527 lncRNA downstream 353250 27153706 ~ 27192358 (-) True G491497
TU559201 lncRNA upstream 40789 27601345 ~ 27601642 (-) True G492122
TU559206 lncRNA upstream 46129 27606685 ~ 27607004 (-) True G492127
TU559229 lncRNA upstream 66724 27627280 ~ 27627646 (-) True G492145
TU559230 lncRNA upstream 67335 27627891 ~ 27628877 (-) True G492146
TU559241 lncRNA upstream 84519 27645075 ~ 27645708 (-) True G492157
XM_036979750.1 mRNA downstream 193717 27342945 ~ 27351891 (-) True LOC110525639
XM_021605947.2 mRNA downstream 193724 27342945 ~ 27351884 (-) False LOC110525639
XM_021605945.2 mRNA downstream 193731 27342945 ~ 27351877 (-) False LOC110525639
XM_021605946.2 mRNA downstream 193737 27342945 ~ 27351871 (-) False LOC110525639
XM_021605944.2 mRNA downstream 267057 27270821 ~ 27278551 (-) True LOC110525638
XM_021605960.2 mRNA upstream 1001 27561557 ~ 27569913 (-) False LOC110525644
XM_021605956.2 mRNA upstream 1001 27561557 ~ 27578513 (-) False LOC110525644
XM_021605957.2 mRNA upstream 1001 27561557 ~ 27578513 (-) False LOC110525644
XM_021605959.2 mRNA upstream 1001 27561557 ~ 27578513 (-) False LOC110525644
XM_036979755.1 mRNA upstream 1001 27561557 ~ 27578513 (-) False LOC110525644
TU558571 other downstream 301415 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 678450 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 993981 26547222 ~ 26551627 (-) True LOC110525619
TU557449 other downstream 1087767 26455732 ~ 26457841 (-) True tmem230b
TU557298 other downstream 1262439 26279707 ~ 26283169 (-) True LOC110525606
TU559251 other upstream 174440 27734996 ~ 27736978 (-) True LOC110525653
TU559292 other upstream 266675 27827231 ~ 27835302 (-) False LOC110525655
TU561692 other upstream 1850659 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 1918099 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 1941697 29502253 ~ 29503391 (-) True LOC110525684

Expression Profile