RNA id: XM_036979757.1


Basic Information

Item Value
RNA id XM_036979757.1
length 5026
RNA type mRNA
GC content 0.48
exon number 20
gene id LOC110525648
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 27652785 ~ 27705710 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTTACCTCGTTTATGTGGACCTCAAACATGCCACGAAATGCTTTTGTGTGTCTGGAAGCTTGTGGTCAGTGAAGGAAATGCATTTGGAGATGACAGCGGTGAATCGAGTTTTAAAAGTTGCCTTTTGGGGAGACATTGCTCTGGATGAGGAGGACATGCGCATGTTTAAGGTGGACCGGATTATAAACATGGCCCAACGGACCGTCCAGACCTTCAATGAGACAACTACAGGGTCTTCTGCCAATGAGACCAGTCGAAACAGAGCATTGCCAAACCGGCAAGGATCACACCGCAGGAAAAGGGCGGCAACATCCAGACCTGAGAGAGTGTGGCCAGAAGGTGTCATTCCCTATGTCATCAGTGGGAACTTCAGTGGCAGCCAGCGGGCGATATTCCGCCAGGCCATGCGTCACTGGGAGAAGCATACCTGCGTGACCTTTATCGACAGGACAACAGAGGAGAGCTACATTGTGTTCACTTACCGGCCATGTGGGTGCTGTTCCTATGTGGGCCGCAGGGGTGGCGGTCCCCAGGCCATCTCCATAGGAAAGAACTGTGACAAGTTTGGAATAGTGGTGCATGAGCTGGGCCACGTGATTGGTTTCTGGCACGAGCACACCCGGCCCGACAGAGACGAACACGTCAGCATCATCAGGGACAACATCCAGCCAGGACAGGAGTATAACTTCTTGAAGATGGAGCCAGGGGAGGTGGACTCTCTGGGGGAGGTGTATGACTTTGACAGCATCATGCACTATGCCAGGAATACATTCTCAAGAGGAATCTTCTTGGACACCATCCTGCCACGCTATGATGTCAATGCAGTGAGACCGCCAATTGGCCAGAGGACAAGGCTAAGCAAAGGGGATATCACACAGGCACGCAAACTCTACAAGTGTTCCAGATGTGGAGACAGTCTGCAGGAAAGCAGTGGGAACTTCTCCTCTCCTGGCTTCCCCAATGGATACTCAGCCTACATGCACTGCATCTGGAGAATATCGGTCACACCTGGGGAAAAGATCATTCTGAACTTCACCTCCATGGATCTGTACAGGAGTCACCTGTGTTGGTATGACCATGTTGAGATCAGAGATGGATACTCCAGGAAAGCCCCTCTGAAAGgtcgTTTCTGTGGGGATAAGCTGCCTGAACCAATCATCTCCACCGACAGCCGCCTGTGGATCGAGTTCCGCAGCAGCAGTAACTGGGTGGGGAAGGGCTTCTCCGCTGTGTATGAAGCCATCTGTGGAGGGGAGGTGAAGAAGGATAACGGACAGATCCAGTCTCCTAACTACCCAGACGACTATCGGCCCAACAAGGTGTGCATATGGAAGATCAGTGTGTCTCAGGGCTACCACGTCGGCCTGACCTTCCAGTCCTTTGAGATTGAGAGGCATGACAGCTGTGCCTATGACTACCTGGAGGTGAGGGATGGGAACTCTGAGAACAGCCCACTGGTGGGACGCTTCTGTGGTTACGACAAGCCAGATGACATTAAGACCAGTTCCAACCAGCTCTGGATGAAGTTTGTGTCTGATGGCTCTGTCAATAAGGCTGGCTTCGCTGCCAACTTTTTCAAAGAGATGGACGAGTGCTCCAAGCCAGACAATGGTCGCTGTGAGCAACGCTGTGTCAACACACTGGGCAGCTACAAGTGTGCCTGTGACCCGGGCTATGAGCTGGCTGCCGACAAGCGCAGCTGTGAGgctgcATGTGGAGGTTTCATCACCAAACTGAACGGCTCCATCACCAGTCCAGGCTGGCCTAGAGAGTACCCCCCCAACAAGAACTGTATCTGGCAGCTGGTGGCGCCCACACAGTACCGCATCACCCTGCTCTTTGACGTCTTTGAGACGGAGGGCAATGACGTGTGTAAATATGACTATGTGGAGGTGCGCAGTGGGCTCTCAGCAGACTCAAGGCTACATGGGAAATTCTGTGGAGCAGAGAAACCTGAGGCCATCACCTCTCAGTACAACAACATGCGCATTGAGTTTAAGTCAGACAACACCGTCTCCAAGAAAGGATTCAAAGCTCAGTTCTTCTCAGACAAAGACGAGTGCTCGAAGGAGAATGGAGGCTGCCAACACGAGTGTGTCAACACCTTCGGGAGCTACAGCTGTCAGTGCCGCAGTGGCTTTGTGCTGCACGAGAACAAACACGACTGCAAAGAAGCCGGCTGTGATCACGTTGTGAACAGTGTGACTGGCACTATCACAAGCCCCAATTGGCCAGATAAATACCCCAGCAAGAAGGCATGCACCTGGGCACTCTCCACCACCGCAGGCCATCGCATCAAAATCGCCTTCAATGCAATTGACATGGAGGCCCATCTAGAGTGTGCCTACGACCACATTGAGATCTACGACGGGCGCGACAGCAAAGCCCCCAGTCTGGGTCGCTTCTGTGGCACTAAGGAGCCTCCTCCCATCATGTCCAGCGCCAACAAGATGTTCATCCGCTTCTTCTCTGATAACTCTGTTCAGAAGAAGGGCTTCGAGGCCTCCCACAcagcagAGTGTGGAGGTCGTTTCAAGGCTGAGGTCAAGACCAAAGACCTGTACTCCCATGCTCAATTTGGTGACAATAACTACCCCGGTGCATCTGACTGCCAGTGGGTGATCGCTGCTGAGAAAGGCTATGGGGTGGAGCTCATCTTCCAGACCTTTGAAATCGAGGAGGAGGCTGACTGTGGCTACGACTACATGGAGCTCTTTGATGGTGCTGACACCAAGTCCCCAAGGCTAGGACGCTACTGTGGCTCTGGGCCTCCTGAGGAGATCTACTCTGCCGGCGACTCCATTGTAATCAAGTTCCGCTCTGACGACACCATCAACAAGAAAGGCTTCCATGTCCGCTACACCAGCACTAAGTTCCAGGACACACTGCACTCGCGCAAGTGACCAGCGGGGGCCAGAAAGGGCCGGGTGGGGAAGAGGGGCAAGCGGAGGGGCCCACAGGGGAGGCGCCAGCCTGACACTCGGAAACCTTCGGCCACCAAGATCATTCAGAAACGACAGAACAGCCGCAAGACCACCAACCGCACCTCAGTTCCCAGGGGCTCAAGCTCCCGACAGACTGTGAGGAGTAAAGCCATTCTGCAGTAGACCTTGTTTTTACCTTTTTTATGGTTATGattggggtgggtgggtggatatTCGGTTTAGGCGGATTCAGGGGGAAAGTTTATCTATCCCcaggttttttattttattttaaaaacaaatgCCTCCTAATGAGAGCTAAATGAACAACAGTGGATTCTCAGGACCTGTAGGAAGGCAGGCATCAGCTGGACAGATCCCTGCTTTTGTCAGGCCAGCCCACCATGCCAGGGGgggaagaaggagaagaggaggagaccggAGGGAGTTCCAGAGGGATTAGCCAACCCCAACCTCCTGGCCGCACTCCTCCGGAATACTAGAGCTCCTCTCCTCACATTCCCATCCCTATTGTTCAAGGATTCCAATCCATAAGAGGATTAGAGGAATACCTTTGACTTGAGGTTTTGATACTGTATGTCAGAGAATTGCAAGTGTAATTGGAATTGTCCTGGCAACCAGTACAGGATTCTCATTATTACCATTAACAAGGAAATTAAGGAAGCAGTTATCTAATAAATAAAACGTGACCCATGTCTTCTGGTTGGTAATTGCTTGCCCATTGAGCGGCTATTGCTGTACCTCTCTGTGTAATTGTAATGAGTATGATTATTCAAAGGGAAGTGACATGCTTTCCTCAACTCAAATCAGTAAGCACTTTACAGTGAATTGTTCCAAATCATGAACTAATGATATTTTGTCAAATGCAAGTTCACTTATTTTTTATGCATTTTTATGCAAATCACTTCTATTCCCTGATTATTTTTTCATTGCTCCATTTAGTTTCTCAGGCGTGCTGGAGATCTGTTTGTACCCTGTAACATTGGGGAATAAAGATATGGTTTCTGTTTCAGTGTTGATCTACAGGTTTAATGTGCAGGATTTTCTCCTACTAGACTAAAACTCTCCATAGATAGTACAATATCCAGGTGTAAGCCAGAGCCTCCTTTATTGTAATAGAAGGCTCTGGGTGCTGGCAAGTCTGAGTAGTCATTGTCATAGCAACCATTGCACAATATAATCATCTGTTTATGGTGGAGCACTGCAGAAGTCCATGCTGGTATGAAAGTGTTGGTATTTTGCAGCAAGACTGATGTTGAATACATGTCAATTACTGTTATCCCACTATATTTTCAGGTTATTTTTCATTTGACTGACAATTCCAGCTGTGTCACTTAATGTCTTTGCCTTTATAACCAATCAATGCAGATGTTTAGCATGGTTGGATTTGTAAAAACCAATGGATGTGCTTGTGATAACAAAGTAAGTGCTATGTGTGCTTGTATGCTGCCATATGCTCCTGTCTCTTTTCAGCTGTCTGTGTTTAGCATGTGCTGGTTAGGTGAGAGTCCTGGGCACTGTAGAGAGAGAACTTCCACAGGAGTCAGAACTGATTGTTTTCTAATAGCCTGAAGCACATTGGTCTGAGACTGCCAAGCTCCATAAACCAATGAAGACCAAGCATTTTCAGTTATTCAATCACACACTCTTAGCTCCGCAAAAAGGCTAACCATTTCATCTTCTGAAATGATTTCCTGGGTTTAGTTTGAGTTTCAGGCTACATTTGGTTTCAACATATCTGTAATAATGATGACCTGTGAACATATCCAGTGACCTCTGACATAATGGTTCAGCCACTGTTTTGCTCTGTACAATACTGCCTTATTATTCATGTTGCATGAGTGATAATGTTATCAAGCAATAATCCTCAGGGTGGCACCAAATAGACTGTGAGCTCACACTAGCTGTGCTCACTGGAAACCAAATCTGTACATTTAACAGTAACAAATAGCGTAGCCTGTCTTTGTGCATTTTAAATCTGCTAATATGaaaagtatttctgtattttttttttcttgttcAGCAGGAAATACATGGTTCTGTTCAGTAAAATTAAAAAGCAATTATTCTTGGAATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559241 lncRNA downstream 7077 27645075 ~ 27645708 (-) True G492157
TU559230 lncRNA downstream 23908 27627891 ~ 27628877 (-) True G492146
TU559229 lncRNA downstream 25139 27627280 ~ 27627646 (-) True G492145
TU559206 lncRNA downstream 45781 27606685 ~ 27607004 (-) True G492127
TU559201 lncRNA downstream 51143 27601345 ~ 27601642 (-) True G492122
TU559272 lncRNA upstream 7035 27712370 ~ 27712609 (-) True G492188
TU559216 lncRNA upstream 7756 27713091 ~ 27713366 (-) True G492134
TU559276 lncRNA upstream 21486 27726821 ~ 27727192 (-) True G492192
TU559279 lncRNA upstream 23722 27729057 ~ 27729291 (-) True G492195
TU559329 lncRNA upstream 65263 27770598 ~ 27770807 (-) True G492229
XR_002473789.2 mRNA downstream 74264 27565809 ~ 27578521 (-) True LOC110525644
XM_021605958.2 mRNA downstream 74270 27562428 ~ 27578515 (-) False LOC110525644
XM_021605956.2 mRNA downstream 74272 27561557 ~ 27578513 (-) False LOC110525644
XM_021605957.2 mRNA downstream 74272 27561557 ~ 27578513 (-) False LOC110525644
XM_021605959.2 mRNA downstream 74272 27561557 ~ 27578513 (-) False LOC110525644
XM_021605969.2 mRNA upstream 8796 27714131 ~ 27724002 (-) False LOC110525649
XM_036979758.1 mRNA upstream 8796 27714131 ~ 27724002 (-) False LOC110525649
XM_021605970.2 mRNA upstream 8796 27714131 ~ 27724003 (-) True LOC110525649
XR_002473790.2 mRNA upstream 29660 27734995 ~ 27737024 (-) False LOC110525653
XM_021605975.2 mRNA upstream 92935 27798270 ~ 27812882 (-) True LOC110525654
TU558571 other downstream 408592 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 785627 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 1101158 26547222 ~ 26551627 (-) True LOC110525619
TU557449 other downstream 1194944 26455732 ~ 26457841 (-) True tmem230b
TU557298 other downstream 1369616 26279707 ~ 26283169 (-) True LOC110525606
TU559251 other upstream 29661 27734996 ~ 27736978 (-) True LOC110525653
TU559292 other upstream 121896 27827231 ~ 27835302 (-) False LOC110525655
TU561692 other upstream 1705880 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 1773320 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 1796918 29502253 ~ 29503391 (-) True LOC110525684

Expression Profile