RNA id: XM_021605969.2


Basic Information

Item Value
RNA id XM_021605969.2
length 3745
RNA type mRNA
GC content 0.51
exon number 20
gene id LOC110525649
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 27714131 ~ 27724003 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGTTTTACATAGAGCCACTGCTTTTCAGGGTTCAGAGCAGGCGCTGGCCAAGGCCCCAGTACATGCACCGCCCGTAGGAAATAGCTACCCAGGCGGTGTTTTACATCCGTGTACTGACAGTGGCACGCGCCTACTCAAAACAAAAGGAAGTCGGCTATAATCAATGATTTATATAAACCCGAGACGGAGTAGTCCTTCTTAAATGTGACAATTTACACGGAATTTAGATTTTGACGTTTATATTTTATTGAATTTGGACTTCATTAGATTTCGATTGCAATCACATAATGCTATCAATGGTAGTAGTATGAAAAGGCTTGGGTTGAAAGGAACACTCTCTCAGAGCTGTAGAGCCTTGGGGTCTCAGTAGAGGATGTACCGTAGTGGGGACTTCCAGACTTCAGCACAGAGGATGGGTACATCCTTGCTGTTCCAGTTGTCTGTTCAGGAGCGTGAGCAGGACTTGGTGTTATTGGACCACAGCTATGCCAAGCCATGGAATGCCCACCCGGACGCCAGCAGTGCCCGGCCCACGCGCATGCTGTTCGTCACACCACGTCGCCAACCTGATGCCACTCCGGAATCAGATCTGTCAATAGATGTGGAATCTGTCACGCCTACACCTATCCGACTCTATGACAACCAGAAAGCACGCAGTGTTATGAAGGAGTGTGAGCGACATGTTTTATTTGCTCGCACAGTTGCCGATGGTCCCCCACCCCCTGATGACTGGGACGAACGCATCAACAAGGCTGGATGGTCGGTCACTCAAAACAAATTATTTAATAAGCTGCTGAAAGCTCTGCAAGCTGAACGACTGGCCCGGCTTGCCAATGAAAATGCCTCCAATGAGCCAGTATTGCGCAGGATTGCTGTGGACAAATGTGCCCGGAAGGTGCGCCATGCACTGGCCAGTGTCAACTGGGACACCAAACTGACCCAGTGGCTACACAGCACCCTGATAGAGTCTCTCAGTCTGGCCATGCTGGCTGCTTACCTGGACGTACTGCAGACACTCAAGAGCAAGTTGCCCTTGCTGATTGACAGAATGCTGCTGACGTCGTCAGTAAAGACTGGAGCGGCTGGTGCAGAagccctctctctgctcctgaaGAGGCCCTGGGATCCAGCCGTGGGCATTCTGTCTCACAACAAACCGAGCAAGCTTCCTGGCTCCCCACTCATCTTAATTGTACCATCAGGTCCCACCAATCCTGCTCTTTCTACCCCGCGCCGATTTAGATTTTGGCAGTCACAACTCTCCTGCTTGGGAAAGGTCATCCCAGTAAGTACCCATGTAAACAGTGGAGCCAATGTGGGTATCGCTCAGTGTCTGGAGCACATGTTGGCCACAGTCAGGGCCAAAGTCATGGAGGTCCACAGTCACTTCCCTCACAAACCCATTATCTTGGTTGGCTGGAATGTGGGAGCTCTCATCGCCTGTCACGTCTCCCTCATGGAGTACCTGACTGCTGTGGTGTGTCTTGGCTTTCCTCTGCTAACAATCAATGGGGCAAGAGGGGATGTGGACGACCCCTTACTGGACATGAAGACCCCAGTGCTGTTTGTGGTTGGTCAGAACGCTCTGCAGTGTGGCACAGAGGCCATGGAGGAGTTCCGAGAGAAACTTAGAGTCGACaacagcatggtggtggtggggggagcTGAAGACAACCTCAGAATCAACTCAACAAAGATCAAATCAGAGGGATTGACACAGACCATGGTGGATCGCTGCATTCAGGATGAGATAGCAGACTTCCTGTCGGGAGTGCTGGAGCGGGCGGAGAGCCACGGCCACAGCTCCGGAGAGCTGAGGGACCTGGACacagagaagaagaagcagcCCTGGCGGGAGTTACCCTTTGACCTGGAGAGGGCCCGCCCCTCTTCCCCTGCCCTCAGAGTACCTATCTCCCCCTCAGGCTCCGAGGACATGTCCAGTGTTTGCAGCAGTCCCACCTCCAGCCCCAAGCCAAAGACCTCGGGACTGTCCCCGGCACAGAAGTCCAGCCTGATCACCGCCACACAACTCCTCAAGACCCATATGCAGCGGTCTGGGACGGTGCTCACACACAAGCAGGCACAAGCCCAGTTTGCTGCTTTTATGAAACAAAACATGCTTGTGAGGAAAAATCTGCCCCCTGGCGCTCCCTCCTGTGTCTTTGtgcCTGTATCCAGTGAGCAGACTGAGAGCCTGGAGAGAGATGAGCTGATGGCCCATCTGAAGAGAAGGCAGACGCCCAGCCCCACTCCCACCAAGGCCTCAAAGAGAGCCAAGATCAAGGTGACCATCCTGCATGGAGAGTCAGCAGGGGGTGCTGTCAGCTCTGCAGCACAGGAAGTGGGACCCTCTGGGAAGCCCCTGAATGTGACTGTGGGACAGACTGTATCTGGAGCCAAGGAAGTCTCCAGACTACTCACAGCCCAGCGGTCTGGTAGTCTGACAGGGGTGTCTAGTTCCCAGAGCTCGGGTTCCAGCTCTTTCCACAATCTGCAGAGTTGCATGGTGTCAGGGTCCTCCTCACAAGTCCAGGCGCAAGCTCCTGCTACTGCCCAAGCACCTTCCGCCAGCAGCCTCCTCCACGGCCTAAGTTTCAGTCTACAGGAGATGGTGACCAAATCCCCTAGCCTGTCCAGCACAACAGCTAGCATGGGCAGCATTCAGgCCCTCGGTGGGAAGCCCCAGGGTCAGGTTCTTAACTCCATAGATACTGGCAGCAGCACTCTGCTCCGGACAGTGCCTGTGGTCTCCACTGGAGGGCTGACCAAGACAACTGCCATCCACCAGCTACTCAACAACGGTGTGCTGGCCAAGCCGGTGAGTGGCCTCCCCGGCCTGCCACACATCTCCACCCAGAGTGCCGGTACGTCTCGAGCTGCCAAACCAAGGCGGCCACGCTGAATGCCCAGGGTTAACTCCTTAACCCCTTGTTTCGGGAAAGCTAGAATAGCAGGACGGGCCCTATCGCCAGTTCACTTTGGCCACACTACAGATGGGTGACACAGATCGTGGACAGCATGATCAGTAATGTGTATGCAGATAGTCATCTATGAAGATCCTAGGTGTTGTCAGTATTTGAAAAGCCAGACTTGCAGCCGTGTAACATCGAGTATATAGATTTGTATCGTATATCCCAACTATCGTATTAGTTTTTGTACTAATTTTCATGTTTGAAAGAGCCATAAGGAAAACATCAATGAGTACCGTGATCTGGGAGGATGTGACATTGGAATTAGAAGTTTGATGAAGTCAAGTTTAATAGTTATTGTTTCTGAATCAATGGAAGTCTGCGGatatgtcaaatgtaaatgttcaaAATGCTGACATGAGAATCCGTCAATGGCATGTTCATATTTGCATGATGTTGCTTTGAATACATGGAACTCTTGATACAAAATTGATGTCGCAAGAATTGTGAATCAGGAGGGCCAAAAATGAGTGCATTTTAATATTGACTAAATGTCACATGACTACAGAATATGTCAATGGCCCTGTTCAGAATGAATTTCTTCACCACATACGTCCACTCGGTAAAGATGGTCTTCATGTTACATTATTAATTAAATCACCTGCAAGCAGCAGCCGTACTTCCAGATGCGCACAAGGACCCACAGACTCACTTTGGAGGGAGTAGAAGAGTTGAAGACAGTAATATTCAGAGTACAAGAGTTGAAGACAGTAATATTCACATCCGGCATATGTTTCTGTTTCTATCATTGCAATAAAGACTGGAAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559216 lncRNA downstream 765 27713091 ~ 27713366 (-) True G492134
TU559272 lncRNA downstream 1522 27712370 ~ 27712609 (-) True G492188
TU559241 lncRNA downstream 68423 27645075 ~ 27645708 (-) True G492157
TU559230 lncRNA downstream 85254 27627891 ~ 27628877 (-) True G492146
TU559229 lncRNA downstream 86485 27627280 ~ 27627646 (-) True G492145
TU559276 lncRNA upstream 2819 27726821 ~ 27727192 (-) True G492192
TU559279 lncRNA upstream 5055 27729057 ~ 27729291 (-) True G492195
TU559329 lncRNA upstream 46596 27770598 ~ 27770807 (-) True G492229
TU559335 lncRNA upstream 51596 27775598 ~ 27775805 (-) True G492235
TU559307 lncRNA upstream 52554 27776556 ~ 27776947 (-) True G492207
XM_021605968.2 mRNA downstream 8421 27652785 ~ 27705710 (-) True LOC110525648
XM_036979757.1 mRNA downstream 8796 27652785 ~ 27705335 (-) False LOC110525648
XR_002473789.2 mRNA downstream 135610 27565809 ~ 27578521 (-) True LOC110525644
XM_021605958.2 mRNA downstream 135616 27562428 ~ 27578515 (-) False LOC110525644
XM_021605957.2 mRNA downstream 135618 27561557 ~ 27578513 (-) False LOC110525644
XR_002473790.2 mRNA upstream 10993 27734995 ~ 27737024 (-) False LOC110525653
XM_021605975.2 mRNA upstream 74268 27798270 ~ 27812882 (-) True LOC110525654
XM_036981825.1 mRNA upstream 93574 27817576 ~ 27820202 (-) True LOC118965072
XM_036979764.1 mRNA upstream 108250 27832252 ~ 27867277 (-) False LOC110525655
XM_036979763.1 mRNA upstream 108250 27832252 ~ 27867278 (-) False LOC110525655
TU558571 other downstream 469938 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 846973 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 1162504 26547222 ~ 26551627 (-) True LOC110525619
TU557449 other downstream 1256290 26455732 ~ 26457841 (-) True tmem230b
TU557298 other downstream 1430962 26279707 ~ 26283169 (-) True LOC110525606
TU559251 other upstream 10994 27734996 ~ 27736978 (-) True LOC110525653
TU559292 other upstream 103229 27827231 ~ 27835302 (-) False LOC110525655
TU561692 other upstream 1687213 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 1754653 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 1778251 29502253 ~ 29503391 (-) True LOC110525684

Expression Profile