RNA id: TU559251


Basic Information

Item Value
RNA id TU559251
length 584
RNA type TUCP
GC content 0.42
exon number 4
gene id LOC110525653
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 27734995 ~ 27737024 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATGTACTTCCCTACAAGAACTCCAGTAGAATTACATTACAATCCAGTCTACATTGGTGTGAATCATTGGTGTGAATCTTTGGTGTGAATCATGAGGTCCTTGGCCCTAGCTTTAATTCTGTGTGCACTACTTCCACTGTTCCATGCTTATTGCTACAGGAAAGCTATGACCTCTGACCCGGGCAAAACCCATTGTCGTGACGACAAGGACAAGACATGGCATCCTGCTGGTTCCCGCTGGAGGAACAGTGATTGCATGAACTGTGATTGTTTAGAATGCTGCCAGGGGTATATGACTCCCATAGATTTTCCTGATGATTGCATGAAGGAGTGGGACCAAAAGGCATGTGAATTCAAGGTGGTTAAGAAGAGTGATCCCTCCATTTCATGCCCTGTCTTCGGCTCTGTGGGGAAGTGAATTGTTTACTTCGCTGTGTTCTCAGTATACAATGAATAAAATATGTTGTCAGCTTACTTTGTGTCAAATGTGAATGTTCTGGTGTCTGACGAATTGGATTGGTTGAAATGAAATGGTAAAAACATCATGATACAAATGAAAAATAAAGATACGTGTTAGTGTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559279 lncRNA downstream 5705 27729057 ~ 27729291 (-) True G492195
TU559276 lncRNA downstream 7804 27726821 ~ 27727192 (-) True G492192
TU559216 lncRNA downstream 21630 27713091 ~ 27713366 (-) True G492134
TU559272 lncRNA downstream 22387 27712370 ~ 27712609 (-) True G492188
TU559241 lncRNA downstream 89288 27645075 ~ 27645708 (-) True G492157
TU559329 lncRNA upstream 33620 27770598 ~ 27770807 (-) True G492229
TU559335 lncRNA upstream 38620 27775598 ~ 27775805 (-) True G492235
TU559307 lncRNA upstream 39578 27776556 ~ 27776947 (-) True G492207
TU559308 lncRNA upstream 54897 27791875 ~ 27793746 (-) True G492208
TU559312 lncRNA upstream 99450 27836428 ~ 27885634 (-) True LOC110525655
XM_021605970.2 mRNA downstream 10993 27714131 ~ 27724003 (-) True LOC110525649
XM_021605969.2 mRNA downstream 10994 27714131 ~ 27724002 (-) False LOC110525649
XM_036979758.1 mRNA downstream 10994 27714131 ~ 27724002 (-) False LOC110525649
XM_021605968.2 mRNA downstream 29286 27652785 ~ 27705710 (-) True LOC110525648
XM_036979757.1 mRNA downstream 29661 27652785 ~ 27705335 (-) False LOC110525648
XM_021605975.2 mRNA upstream 61292 27798270 ~ 27812882 (-) True LOC110525654
XM_036981825.1 mRNA upstream 80598 27817576 ~ 27820202 (-) True LOC118965072
XM_036979764.1 mRNA upstream 95274 27832252 ~ 27867277 (-) False LOC110525655
XM_036979763.1 mRNA upstream 95274 27832252 ~ 27867278 (-) False LOC110525655
XM_021605976.2 mRNA upstream 95274 27832252 ~ 27867279 (-) False LOC110525655
TU558571 other downstream 490803 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 867838 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 1183369 26547222 ~ 26551627 (-) True LOC110525619
TU557449 other downstream 1277155 26455732 ~ 26457841 (-) True tmem230b
TU557298 other downstream 1451827 26279707 ~ 26283169 (-) True LOC110525606
TU559292 other upstream 90253 27827231 ~ 27835302 (-) False LOC110525655
TU561692 other upstream 1674237 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 1741677 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 1765275 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 1938345 29675323 ~ 29675573 (-) True G494542

Expression Profile