RNA id: XM_036981825.1


Basic Information

Item Value
RNA id XM_036981825.1
length 1691
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC118965072
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 27817576 ~ 27820202 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacccaagaagactctaggctgtaatcactgcctaaggtgcttcaacaaaaaactgagtaaagggtctgattactaatgtaaatgtgatgtatATTTTATAAATTCGATAAcatttcttaacctgtttttagtttgtcattatcgggtattgtgtgtagatagatgaggtCAAAAAAacaaattcattttagaataaggctgtaacaaaacgtGGAGAATTTGAAGTgggcagaatactttccgaaggcactgtctGTTCTGTAAGTATATGTTTGCATGAACTGTTCCCTTTGTCTTCACAGCACCCTCAGATGATGATCATGAGGTGATTACTATGatcaaagagcttctggataccCGAATCAGGCCCACAGTGCAGGAGGATGGTGGAGATGTCCTGTATTGCGGCTTTGAGGATGGCATTGTGAAGCTGAAGCTGCAGGGCTCCTGCACCAGTTGCCCCAGCTCCATGGTTACACTGAAGAGTGGCATCCAGAATATGTTGCAGTTCTATGTCCCTGAAGTGGAAGGGGTAGAGCAGGTGAAGGATGAGCAAGAGGAAGTTGTCCAAGGCTGAGTCCAATGGAATCGACTGACTCTACAGACATTCTTCTTACCCTCTCCCCTCCAGCACCCACTCCTGACTCCATCCTATAGTGGATTAATGAGCATCGTAGAGTCCTGTCTAAAGCACAGCAGTGGTAAAAGAAGAACTGCAGGGTTATTTGGAGAGATTTCTCATTGAACTTCATAGCAATTCTCAGAGATTGTCAGCTGTTAAGTCATTCTGGCTATGTGTTTCAGTGGGTAAGATGTACTGTCTTTGTCCTGCTGCTTGCTTTGAAAGGCTTCTAAGGTGAAGGATTTCAGCTTGTCTGACGATTCATTTATTACAGTTTCTAGTATTGTCACACCGTATAACTCAGTAAGTATTGGTTATTACaggcccaatgcagccgtttGTATATGATTATCAcctcatttctgggtaacaattaagtaccttactgtaaaagATTTCCATTCAAATGGgcaaaatagctttttagcaaaaAACGACATCAAGTAAGGATTTTGCAAAGGCGAGAATGGAGAACTAGCTGTCATTGTCAGAGAGGTTTGAAGCTCTTTATTGGTCTATTcatttaccgcatggtgatgtcaccatggaaatcCGAAACTCCCACACATGCAAACCTGCTgtttagaaggtcctgtgtagattgtattttcaaccagcagctatcaggaaataacactgataaaTTGTTTCACTCCTTTACAGTGTTTGGTTCATCAGCTGTTGTTCAATATATACATTTGGACTGCACTGAGCCTTTAAAAAAAGCACAACTCCATCTATATACAACACAAATGTGCACACTGtataatgtaaataaataaaatgcattGAATTAAGTATGAAATGATTTTCTTTAATGCATTGAATGTAgttctttcttgaactgcactgttggttcagagcttgtaagaaagcatttaaAGTAAGGTCTACACgttatattcggcgcatgtgacagtTTGATATGATTTGAAATTGCCAACCAAATAATCTGTCAACCTGACAGGGGAAATGGTGCACAGATGGAGTATGGTCTGGAGGAAAGCTTGAGTTTGCGTTGGTTTTTAAGTCTGTTATTATTATGTGAATGTATAATAAGCAATTAAA

Function

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0005737 cytoplasm cellular_component
GO:0005506 iron ion binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559308 lncRNA downstream 23830 27791875 ~ 27793746 (-) True G492208
TU559307 lncRNA downstream 40629 27776556 ~ 27776947 (-) True G492207
TU559335 lncRNA downstream 41771 27775598 ~ 27775805 (-) True G492235
TU559329 lncRNA downstream 46769 27770598 ~ 27770807 (-) True G492229
TU559279 lncRNA downstream 88285 27729057 ~ 27729291 (-) True G492195
TU559312 lncRNA upstream 16226 27836428 ~ 27885634 (-) True LOC110525655
TU559383 lncRNA upstream 72666 27892868 ~ 27893100 (-) True G492279
TU559388 lncRNA upstream 76080 27896282 ~ 27896518 (-) True G492284
TU559394 lncRNA upstream 89364 27909566 ~ 27909770 (-) True G492289
TU559400 lncRNA upstream 94073 27914275 ~ 27914474 (-) True G492295
XM_021605975.2 mRNA downstream 4694 27798270 ~ 27812882 (-) True LOC110525654
XR_002473790.2 mRNA downstream 80552 27734995 ~ 27737024 (-) False LOC110525653
XM_021605970.2 mRNA downstream 93573 27714131 ~ 27724003 (-) True LOC110525649
XM_021605969.2 mRNA downstream 93574 27714131 ~ 27724002 (-) False LOC110525649
XM_036979758.1 mRNA downstream 93574 27714131 ~ 27724002 (-) False LOC110525649
XM_036979764.1 mRNA upstream 12050 27832252 ~ 27867277 (-) False LOC110525655
XM_036979763.1 mRNA upstream 12050 27832252 ~ 27867278 (-) False LOC110525655
XM_021605976.2 mRNA upstream 12050 27832252 ~ 27867279 (-) False LOC110525655
XM_036979759.1 mRNA upstream 12050 27832252 ~ 27867279 (-) False LOC110525655
XM_036979760.1 mRNA upstream 12050 27832252 ~ 27867279 (-) False LOC110525655
TU559251 other downstream 80598 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 573383 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 950418 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 1265949 26547222 ~ 26551627 (-) True LOC110525619
TU557449 other downstream 1359735 26455732 ~ 26457841 (-) True tmem230b
TU559292 other upstream 7029 27827231 ~ 27835302 (-) False LOC110525655
TU561692 other upstream 1591013 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 1658453 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 1682051 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 1855121 29675323 ~ 29675573 (-) True G494542

Expression Profile