RNA id: XM_036979764.1


Basic Information

Item Value
RNA id XM_036979764.1
length 6223
RNA type mRNA
GC content 0.48
exon number 20
gene id LOC110525655
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 27827231 ~ 27885634 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGGTCAACGTCACTCAGATtagtgtatttatttttattttcaaaatttAGCATAGTACACGGTCATTCGCGACGAAGAACCAAGTAAAGCTAGAAAGATTTTCTCAGATATTTCGAAGGTGCAAATATGATCTACGGTGTCACTTGCCTGATCTAAAGCCCTACCGAATCTAACTGACAGTAGCGCCGATCTGCACATTTTGTCATCGTTGTTGCGCCCATGGCAGATCAGTTGTTGTCCACGGGAGTAAAGCTGGATATGAATTAGTAGCTACTGGACACCAACGTAGCTAACGTTGGTCAGCTAATTAGCCAATGCTCGAAGAGAAAGCAGGGGGTATTCAGGAGTCTACACCAAGAGCTCTGGAGAAACGGGTGAAATAGCTAACTAAATGCCTTTACGCTGAAAATGGGTGATGACGTTTGTAAATAACTAGAACAACCTGGccagagtagctagctagcttagcagTTTGCCAACACAACTGTCAAAGCCAGCTAGATAGGGATTTATTTGCTACCACTAGCTAACTGATTGTCCATTGCTAATGTTATAGCAATAACCTTAGTTAATAGCTAGCCCGTGTCAACGCATATGCTGATAGTGAGTTAGCTAGTTggctatttagctagctagctattatgACAGTCGACaccttggtagctagctagctagcgcctGGAAATCGAACGAGGGGGCTCTTCAATAAGATAGCTAGCTTGTTAACTAACCTAAATTGGCTACGGTCATTCAATTATCCAAATCGAATAGCTAGCTAGGCGTTCTTGTGGATAGGTATTGATTGCAAACCAATCGGCACTTGGCTTTCACCACCGGAAAATGAAGAAGTTCTTCGATTCACGCCGTGAACTTGCGAGTTCCGGGCCTGGTTCTGGAGCAGGTGGAGGTGGCATTGGGTCGAGCAGCAGTGGTGGCAGTTTTATTGGACGGGTTTTCACCATTGGACGGTATCAAGTGACCGTTGATGAAACTGTTGCTGAAGgAGGCTTTGCCATTGTGTTCCTGGTGCGGACCAACCAGGGGGTGCGCTGTGCTCTGAAGAGGATGTACGTCAACAACGAGCACGACCTGCAGGTCTGCGAGCTGGAGATCCAGATCATGAGGGACCTCGTGGGCCACAGGAACATTGTGGGTTTCCTGGACTCCAGTATAACTGCAGTGGGAGCAGGAGATGTCTGGGAGGTCCTCATCCTCATGGACTTCTGTCGTGGTGGTCAGGTGGTGAACCTGATGAACCAGCGTCTGCAGACAGGCTTCACTGAGCCAGAGGTGCTGCAGATCTTCTGTGACACCTGCGAGGCCGTGGCCCGACTCCACCAGTGCAAGACGCCAATCATCCATCGAGACCTAAAGGTGGAGAATATCCTGCTCCATGACCGGGGACACTATGTGTTGTGTGACTTTGGCAGTGCCACCAACCGCTTCCAGAACCCTCAGACAGAGGGTGTTCCACTGGTGGAGGAGGAAATCAAGAAGTACACTACTCTGTCATACCGAGCCCCAGAGATGATCAACCTCTATAATGGCACGGTCATCACTACAAAGGCAGACATCTGGGCTATGGGATGCCTGCTGTATAAGCTGTGCTACTTCACCCTGCCGTTTGGGGAGAGCCAGGTGGCCATCTGTGATGGCAGCTTCACTATTCCAGACAACTCCCGCTACTCCCCGGACATGCACTGCCTCATCAGATACATGCTGGAGCCTGACCCTGAGAAGAGACCAGATATCTACCAAGTGTCCCACTTCTCCTTCAGGCTGGCCGGGATAGAATGCCCCATCCGGAACGTACATAACTCCCCTATTCTTACAAAACTCCCCGAACCAATCAGAGCCAGCGAAGCTGTGGCCAAAAAAAGTCAATCCAAAGCCAGGCTCACAGACCCTGTCCCCACAATGGAGACCTCCATTGCACCCCGTTCACGCCCCAAAGCTGGCGGGACCCAGCCCATAGGCATCCTGCCCATCCAGCCAGCCCTCACCCCACGCAAGAGACCCAACGTGGCTGCAGGAGGGCCCCAGCCCATAGGTGTTTTATCCGCCGCCCAGCCTGCTGCTGCTGTCCAATCAGTTCAGCAGGCACCTGCTGCACAGGCCACATCCCCACTGGCTCAGACCACCTCTTCGCAACCCATGGCCACGCCCCAGCACCAGCAGGGTCTCTTCATGAAGCAGCAGGCAGCAGCCTTTTTCAGCCCACATCAGCAAGTCAACCAGCCTCTGGCATCTGGCCGTGGGCTCCACAAGGTTGGCTCCCTGACGCCCCCCTCCTCCCCAAAGATGGGCCCCCGGGGTGGCCACAGGCGCATACTGAGCGATGTCACCCACAGTACTGTGTTTGGGGTCCCAGTCAGCAGGTCCACCCAGCTACTGCAGGCGGCTGCAGCCGAGGCCAGCCTCAACAAGTCCAAGTCAGCCAGCACCACCCCCTCTGGCTCCCCCTGCTCCTCCCAGCAGAGTGTGAACCAGCCAGGTGAGGGCGGTGCCCAGACCGCTCCCATTGCACCGTCTGGCAGCTGGAACCCGTTTGGTGACGACAACTTCTCCAAGCTCACTGCTGAGGAGCTACTCAACAAGGATTTTACCAAGCTGGTCGAGACTACAACAGGGGAGAGGGCCAGCCTCTCCACAGAGAACCTCATTCCAGGTCTGCAGCCTGTCTCTGCTGCTGGTGCTACAGGCAAGGCTTTCCCAGCTGAGAGATCTGCTGACATCCTGAGTTTGGATGCAGGCTCAGAGATGTTGAGTGGCCCGGACCCCTTTAACACACACCCCCTCTCTGACACCCCAGATAAGCTGATTGAGGGACTGAAGTCCCCTGAGACTTGTCTGCTGCTCCCTGACCTTTTGCCCCTGGCTGACCCCTTCAGCAGCTGTGGAGAGGGCAACAGCAATGCTGCAGCTAAGGCTGATACGTATGTGGACTCTCTGATCCTGGGTCTGGACACAGCCTCAGCCAGCCTGCCAGACCCTCTAGCTGGGGAGGACTCTCTGCTGGGCTGCTCTCTGCTGTCTCACACCTCCACCCCTGGGGTTCAAACTGTCTGTGTACCTccatcctcctgctcctctgCCTCCTGTCTGGATGAGCTGGCTTCTGTCTCATTTGGCACTGCCCAAGCACCTGCTGACTCTGCTTACCTCATGTCGGGCTTCCAGCCACCCGAGGCTGGGGAGAAGGGCACTGAGGACGAGTTTGACCCCATCCCTGTGCTCATCTCCAAAAACTCCAACAACCAAGAGCTGAAAGGGGTGAGTAATGGTTACGCTGTGCTGGACGAGGGGGGTTCTGAAATTGAGCTGCCTGGAGAAGGTCACAGAGCAAACGAAGGCTGTATCCACTCCAGCGATGATGAGGAGGAAGAcgacagagtgaaggaggagcAGGGCAGGAGGGCCAGTGAGAGTGATGTGGTTCATGACTGCAGTGGCTCCAGACCTTTGCTGCTGgattcagatgaagaggaggagcaggggtCTGAATTACTCCTCACATCCTCCCAGCCATCCCTATCACACCCACAACTCTCCAATTCCTCCCACCAAACTACCCCATCCCTCTGTGCCCCATCCCTGAATCATTCCCACCAGATGCCACAGCAAGCCAGGGTGGTTGAGGTTGTCCCTGATGTCTTCTTCAAATCCCCCTTCAGGCTTGAACAAGAGGCAGGCGACGTGTTCGCAAATGCCCCCTTCCAACGTCCCCCTGTTGTGGCTCAACAGCATCCAGACGTCTTCCTGCAGGCCCCCTTTGTGAAGCCCAAGACCCAGCACCCTCACCCAGCTGTGGTTCACCCTGTGGCCCCTGAACCAGCCCTCTTGAGCCAGGTGGCCACACAGCCTTTCCGCCCACAGGCCCTGGCCAAGTACTCCCGACACTTTGAGGGCCCCTTGCCTCACCAACCTGTGACAGCTCAGAGGGTGGTGTCCAATGTGAGCAGGCAAGCTGCTGTGGGCCCCTTACACTCCTGGACTTCAGAGGTGAACTCAGTAGACCCCTTTGTCTCTGCGCCCTTTCACATCAAGGCCCCACAAGAAAAGCCCTGAAAGATCCCATCCTTCCCTACAGGGAAGCGGAGCCCACACCTGTGCACACTACAGTAAGGCATACACACTGTATGCTGTCACCTGCACCGGGGCTGGACTTACAAACTTCAAACATTCTAGATATTGAGCAAGGTCATCGATGTGTTTTTTTGCTGCAGTGGAATTGAGGTGGGTCCTCATTTATAAATGCTGTGTACACACAAAATATGCCCCAAAACATGCATGCAGCAGTTTAAGCAAAAGTTGTCATTTATAAAAACTGAACTTGACGTGAGAATGTGATTATCCTGCCTCCATGCGTATGCAGTTTCAAGTGGTTGAATTTTTGCATTGCAATTAAGGGAAAAGTAGCGTAGTAGCCTTGTGCATGAATACagtggccttcagaaagtattccacaTTTAGTGAATTATGTGAAGCCTGAATTCTAAATGGAtctttacccatctacacacaataacctatgacagtgaaaacatgtttatagaaatgttgcttatttattgaaaattaaatacagaaatctcatttacataagtattcacacccctgagtcaatacatacctttggcagtgattacagctgtgagtctttattggtaagtctaagagctttgcgcACCGTAAATGTACAGTATTTGCACATTCTTTTAAAATGATATTGTTTGGTGATctttgctagacagacattttaagtcttgccatagattttcacgctgatttaagtcaaaactgcaactaggccactcgggaacattcaatgttgtcttggccttctgaaaggtgaatttgtctgttggaaagcagactgagtcaggttttcctctaggattttgcctgcgcTTACCTCCAGTATATTTTTATTCcccaaaaactccctagtccttgccattGACGAGCATACCcatcatgatgcagccaccaccatgcttgaaaatatagtgATACtcagatgtgttgtgttggattttcctcaaatataacgctttgtattcaggatataaagtacatttctttgccacatttttggcagtttcttgcaaacaggatgcatgttttggaatattttttattctgtacaggcttttgtcatttaggttactcttgtggagtagctacaatgttgatccaccaagctcaaagggatattcaatgcttgtttatttttacccatctaccaataggtgccttgcTTTGCGAGGGATtttaaaacctccctggtctttgtggttgaatatgtgtttgaaattcactgctcaactgagggactttacaCTTATCTGTATGTGTAGTGTACAGTGATGAGATGGTCACTAAAAAAAATTCTGTTAAACTATTGCACAGTGTGAGTCCATGGAACTTGTGACTTAAGACTATTTTTATTTAGGTTGCCATAAAAGATGACtcaagcttttcatttttttattaatttgttaacatttcaactttcacattatggggtattgtgtgtagcccaGTGagacaatctcaatttaattcattttaaattcaggctgtaaaataaAATAgccaaatgtggaaaaattcaagggttctgaatactgaATTCTGAAGCCACTGTATATAATAATACTCGAATTCATAACAAAAACAGGTAGCTAAATATAACAAGATACAGTAATTTGTCATTAGTGAGATGAGCAAAAATCTATTTTCTTTGCATTCTAAAATAATTAGAAAAGTAATTTTAAATTTCCATGATCATTTCATAATTAATTCCTCACCTTTTCTGACTAATGGCTTCATATTCACAAAATTGCCTATAGGCCTGAAGCAAGTTATTATAGGCTACAATTGATCCAATTTCTCAATTGATTAAACCCACTTTACAATAGTAAATAGATGGGCTATTTCAAGTATTTTGCTCTATGCAATCTGACGTGAAGCTCAGTTTAACGGTGGAAGAGACGGTTCCTTTTCCATTAACGTTTGTAGGCTACCTCTGAATACTGTGCTGTCAAATTTCTCGGGTAGACAATATTTCATTTATAAACATGCATACACcgagtacacaaaacattaagaacaccttcctaatattgagttgcaccactttttgccctcagaacagcctcatttcGTCGGGGCAtggtctctacaaggtgtcgaaagcattccacaagaatgcttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559308 lncRNA downstream 38506 27791875 ~ 27793746 (-) True G492208
TU559307 lncRNA downstream 55305 27776556 ~ 27776947 (-) True G492207
TU559335 lncRNA downstream 56447 27775598 ~ 27775805 (-) True G492235
TU559329 lncRNA downstream 61445 27770598 ~ 27770807 (-) True G492229
TU559279 lncRNA downstream 102961 27729057 ~ 27729291 (-) True G492195
TU559383 lncRNA upstream 25591 27892868 ~ 27893100 (-) True G492279
TU559388 lncRNA upstream 29005 27896282 ~ 27896518 (-) True G492284
TU559394 lncRNA upstream 42289 27909566 ~ 27909770 (-) True G492289
TU559400 lncRNA upstream 46998 27914275 ~ 27914474 (-) True G492295
TU559402 lncRNA upstream 47770 27915047 ~ 27915297 (-) True G492297
XM_036981825.1 mRNA downstream 12050 27817576 ~ 27820202 (-) True LOC118965072
XM_021605975.2 mRNA downstream 19370 27798270 ~ 27812882 (-) True LOC110525654
XR_002473790.2 mRNA downstream 95228 27734995 ~ 27737024 (-) False LOC110525653
XM_021605970.2 mRNA downstream 108249 27714131 ~ 27724003 (-) True LOC110525649
XM_021605969.2 mRNA downstream 108250 27714131 ~ 27724002 (-) False LOC110525649
XM_021605986.2 mRNA upstream 160899 28028176 ~ 28044286 (-) False LOC110525658
XM_021605984.2 mRNA upstream 160899 28028176 ~ 28044300 (-) True LOC110525658
XM_021605987.2 mRNA upstream 177528 28044805 ~ 28105169 (-) True LOC110525659
XM_036979773.1 mRNA upstream 243691 28110968 ~ 28180719 (-) False LOC110525660
XM_036979772.1 mRNA upstream 243691 28110968 ~ 28180720 (-) True LOC110525660
TU559251 other downstream 95274 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 588059 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 965094 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 1280625 26547222 ~ 26551627 (-) True LOC110525619
TU557449 other downstream 1374411 26455732 ~ 26457841 (-) True tmem230b
TU561692 other upstream 1543938 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 1611378 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 1634976 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 1808046 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 2659409 30526686 ~ 30527546 (-) True LOC110525714

Expression Profile