RNA id: XM_021605978.2


Basic Information

Item Value
RNA id XM_021605978.2
length 6580
RNA type mRNA
GC content 0.48
exon number 22
gene id LOC110525655
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 27827231 ~ 27885634 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTAGGTCAACGTCACTCAGATtagtgtatttatttttattttcaaaatttAGCATAGTACACGGTCATTCGCGACGAAGAACCAAGTAAAGCTAGAAAGATTTTCTCAGATATTTCGAAGGTGCAAATATGATCTACGGTGTCACTTGCCTGATCTAAAGCCCTACCGAATCTAACTGACAGTAGCGCCGATCTGCACATTTTGTCATCGTTGTTGCGCCCATGGCAGATCAGTTGTTGTCCACGGGAGTAAAGCTGGATATGAATTAGTAGCTACTGGACACCAACGTAGCTAACGTTGGTCAGCTAATTAGCCAATGCTCGAAGAGAAAGCAGGGGGTATTCAGGAGTCTACACCAAGAGCTCTGGAGAAACGGGTGAAATAGCTAACTAAATGCCTTTACGCTGAAAATGGGTGATGACGTTTGTAAATAACTAGAACAACCTGGccagagtagctagctagcttagcagTTTGCCAACACAACTGTCAAAGCCAGCTAGATAGGGATTTATTTGCTACCACTAGCTAACTGATTGTCCATTGCTAATGTTATAGCAATAACCTTAGTTAATAGCTAGCCCGTGTCAACGCATATGCTGATAGTGAGTTAGCTAGTTggctatttagctagctagctattatgACAGTCGACaccttggtagctagctagctagcgcctGGAAATCGAACGAGGGGGCTCTTCAATAAGATAGCTAGCTTGTTAACTAACCTAAATTGGCTACGGTCATTCAATTATCCAAATCGAATAGCTAGCTAGGCGTTCTTGTGGATAGGTATTGATTGCAAACCAATCGGCACTTGGCTTTCACCACCGGAAAATGAAGAAGTTCTTCGATTCACGCCGTGAACTTGCGAGTTCCGGGCCTGGTTCTGGAGCAGGTGGAGGTGGCATTGGGTCGAGCAGCAGTGGTGGCAGTTTTATTGGACGGGTTTTCACCATTGGACGGTATCAAGTGACCGTTGATGAAACTGTTGCTGAAGgAGGCTTTGCCATTGTGTTCCTGGTGCGGACCAACCAGGGGGTGCGCTGTGCTCTGAAGAGGATGTACGTCAACAACGAGCACGACCTGCAGGTCTGCGAGCTGGAGATCCAGATCATGAGGGACCTCGTGGGCCACAGGAACATTGTGGGTTTCCTGGACTCCAGTATAACTGCAGTGGGAGCAGGAGATGTCTGGGAGGTCCTCATCCTCATGGACTTCTGTCGTGGTGGTCAGGTGGTGAACCTGATGAACCAGCGTCTGCAGACAGGCTTCACTGAGCCAGAGGTGCTGCAGATCTTCTGTGACACCTGCGAGGCCGTGGCCCGACTCCACCAGTGCAAGACGCCAATCATCCATCGAGACCTAAAGGTGGAGAATATCCTGCTCCATGACCGGGGACACTATGTGTTGTGTGACTTTGGCAGTGCCACCAACCGCTTCCAGAACCCTCAGACAGAGGGTGTTCCACTGGTGGAGGAGGAAATCAAGAAGTACACTACTCTGTCATACCGAGCCCCAGAGATGATCAACCTCTATAATGGCACGGTCATCACTACAAAGGCAGACATCTGGGCTATGGGATGCCTGCTGTATAAGCTGTGCTACTTCACCCTGCCGTTTGGGGAGAGCCAGGTGGCCATCTGTGATGGCAGCTTCACTATTCCAGACAACTCCCGCTACTCCCCGGACATGCACTGCCTCATCAGATACATGCTGGAGCCTGACCCTGAGAAGAGACCAGATATCTACCAAGTGTCCCACTTCTCCTTCAGGCTGGCCGGGATAGAATGCCCCATCCGGAACGTACATAACTCCCCTATTCTTACAAAACTCCCCGAACCAATCAGAGCCAGCGAAGCTGTGGCCAAAAAAAGTCAATCCAAAGCCAGGCTCACAGACCCTGTCCCCACAATGGAGACCTCCATTGCACCCCGTTCACGCCCCAAAGCTGGCGGGACCCAGCCCATAGGCATCCTGCCCATCCAGCCAGCCCTCACCCCACGCAAGAGACCCAACGTGGCTGCAGGAGGGCCCCAGCCCATAGGTGTTTTATCCGCCGCCCAGCCTGCTGCTGCTGTCCAATCAGTTCAGCAGGCACCTGCTGCACAGGCCACATCCCCACTGGCTCAGACCACCTCTTCGCAACCCATGGCCACGCCCCAGCACCAGCAGGGTCTCTTCATGAAGCAGCAGGCAGCAGCCTTTTTCAGCCCACATCAGCAAGTCAACCAGCATCAGCTGGTGCAGACCCTCTACAAACGGCAGCAGCCTCCCATGCCGGCCCCCCAGAGCTCTGTGGCTGTGCAGCCCAAAGCTAGTCCTGTTGCTCCTCTGCAGCCACCAGCCGGCCCTGTGCCCCCTTCCCCCCAAACAGCAGCTCCCCCTCAGCCTGCAGCCACAGGACCTGCTGCACCTGATTCCGACTCTGACTGTGACTCTGAGCCCACGCCTCTGGCATCTGGCCGTGGGCTCCACAAGGTTGGCTCCCTGACGCCCCCCTCCTCCCCAAAGATGGGCCCCCGGGGTGGCCACAGGCGCATACTGAGCGATGTCACCCACAGTACTGTGTTTGGGGTCCCAGTCAGCAGGTCCACCCAGCTACTGCAGGCGGCTGCAGCCGAGGCCAGCCTCAACAAGTCCAAGTCAGCCAGCACCACCCCCTCTGGCTCCCCCTGCTCCTCCCAGCAGAGTGTGAACCAGCCAGGTGAGGGCGGTGCCCAGACCGCTCCCATTGCACCGTCTGGCAGCTGGAACCCGTTTGGTGACGACAACTTCTCCAAGCTCACTGCTGAGGAGCTACTCAACAAGGATTTTACCAAGCTGGTCGAGACTACAACAGGGGAGAGGGCCAGCCTCTCCACAGAGAACCTCATTCCAGGTCTGCAGCCTGTCTCTGCTGCTGGTGCTACAGGCAAGGCTTTCCCAGCTGAGAGATCTGCTGACATCCTGAGTTTGGATGCAGGCTCAGAGATGTTGAGTGGCCCGGACCCCTTTAACACACACCCCCTCTCTGACACCCCAGATAAGCTGATTGAGGGACTGAAGTCCCCTGAGACTTGTCTGCTGCTCCCTGACCTTTTGCCCCTGGCTGACCCCTTCAGCAGCTGTGGAGAGGGCAACAGCAATGCTGCAGCTAAGGCTGATACGTATGTGGACTCTCTGATCCTGGGTCTGGACACAGCCTCAGCCAGCCTGCCAGACCCTCTAGCTGGGGAGGACTCTCTGCTGGGCTGCTCTCTGCTGTCTCACACCTCCACCCCTGGGGTTCAAACTGTCTGTGTACCTccatcctcctgctcctctgCCTCCTGTCTGGATGAGCTGGCTTCTGTCTCATTTGGCACTGCCCAAGCACCTGCTGtggatttaacaagtgacatcacctggattcacctgACTCTGCTTACCTCATGTCGGGCTTCCAGCCACCCGAGGCTGGGGAGAAGGGCACTGAGGACGAGTTTGACCCCATCCCTGTGCTCATCTCCAAAAACTCCAACAACCAAGGTGGTCACTCGCGCAGCAACAGTGGCAGTTCAGAGTCCAGCATCCCCAACATGGCCCGCTCCCTTCTGCTGGTGGATCAGCTCATCGACCTCTAggggggttgggagagagaggtCGAAGGGGCAGCGTGCAATCGTAACACgtaggggatggagagggggcaGCAGAGGCACTTCTGTAGCACCTTGTGAGGTGAAATGGACTAGTGAACTTTCTCCGGTGTGCCtccttgccccccccccaccatctctTGCTTGCCTGATACAATGGTGGCCGTTGGCATTCCCATGTTGATGTAACAACTTTGCATTAACCCCCCACCCTGACACATTGTCTGCTTCTGTCTTGGCTGCACTAGGGTCATTATCACGCTTTCATCAATCTGTCAACATTCCTAATTGTCCTTCCATGCAGATTCAACCCCACCTCATGCACATACTGCCTGGCTTGCCCATAACCCGATTTGTCTTTGCTGGGTTCTACAATGTTTGATCACTTATACAATCCATCCCTGGCATACCTATTTGTCACAGGTCTGACCATGTAACACAACTGTACAGTGCTTCTATCTCTCCTGGTTATCTGTATGCACTCTTCCTGTAGCAGCTATGACCATGTATAGTCTATAGAGCAAAGCAGTTGCCCTTAAGAAAAGCAGATGCTGACTGAACTATCTAGAGCTGCTTGCATTGGACATACAGGGGGGACTAATAATGACGATAAGCTGTCAGTCCTTGGTATTCTGCGGTGTGTTTAACTGTTATCAAACTGCTGTGATCCACTGCTGCCCCCTGGGAATGTTTGGCAGTCTGTTGTAAGATGTCTGCCATTGTAAGCTCATAAGCGCTTGTGCAACGTGCACCGTTACAGTAGACATCTGATCTCTTCAGGCGTCGCCAGCTGCCCCCAAACTGGCGCTGATATTCAGGTCTGGTACAACAACCATCTCCTTTACTGTGCAACCATGTTTATCTTGGCTGTGCTTTACGTAAGAGCTACAATCTGTTTATCTGAAGGTTTCCTGGGATTATTGTTCCTGTGCTGTGAATTTCCTGTAGTCCTCCTTTAAGATTTATATTGAGCTGGTGCATTTTTTTCCCTCCCACTATGCCCTTAAGTCTAAGAATTGTCTGGCAAGGTTGATGCAATCGTGGTATTATTCTAAATGTGTGTGATTCATTTGAATGCACTTGTCTTTTGATCATGTGTATTCCAATAAGAGCTTTATTGGGTATATTTGGGTTTGTTTGTTTCTATCCTCGGCACATTGGCAAGGTTAGCAGCTGCGATAGAAAAGGGGTGCCATAATGAGCATGGGAATAAGCATGAGAATAAGACTCGCAGGTACAACAGAAATGTGCAATGATTATTTAATGAGAGTCGGTTGATATTCACCAGTGAGCCAGCAGAGCGAGAACTAGCTGCAGCTTGGGTTTTGTCTGTCTGCTTGTGTTGGGCTGGTGTAGCCATACAGTACAGGCAATCCGTTTCTCTATTTGTTCCATGTGCCTCTGTTGCACATGTTCATAATCATTCATATCCACCTCCCTTTTGTCcgatctacccatccatccataccacacaaacacacacaccttgatgTTGCTTGCCTATGATGTAATGTCCAACTTAAATCTGGACATCTCCATTCCCCACCAACTCTTATGTATATAAAACCACTGTTTCAATGTCCTCATTCTCCCTTTAAAAATGTACTGTAGCTACTACTTTGAAAGTgttttaatatttaaaaaaatatatgttatgaATAAATGTGACTATTGATAGTACTATAGAATGAATGTATGAAGTGAGTCAATATGAAATATATAAAGTTAACAAGTACATATACTTgaatgaaaaaaatgtatttctgtgTATTATTTATGAAGCTGTATTTAAGAGTACTACCATCCTGTCCCTCCATTTTGTTCACAGTATTTTTGTCTCCTTGGTCTTGTGGAAGACTATTTTAGCATAGGGAAGCAACTAGCCCCATGGTTTTAACTATCTTAATTTGGTTGTGTTTCTGAGGATAGCTCTGTGCTTGTTACTTACTGTACCTTATTGAGGTATTGTCATCACACCTCATTCCTGGTTTAGACTTTTTTTCTAGTTTGATTTTCTTTATCTGAGCTGTAGTTTATTTAATAGCTTGAAGGGAATATATTTCTTCCAACTCTTAGAGCCCTCCCTCTGAAAACAGGGTTTATGACGGAAGGGTCTTCCTGATATCTCTGTCCCTTATTGTCCTCCTCCTTTACTGTTAACCCCTAAATGTATCACAAAAGCTATCTAGTCTACCTACTTACAAGTTACATTGCAATTAGTATAATTTGTTGGAAACGGAACCAAAAATTTGTCTTGACTcgtctttctcctcctcccagcAAGCATAATCAGTGGATGTGATGCACTACATTGTACCCACCCTTGATTGATCTTCTGAGGCATATCAAAATGATACAATATTTCAGAAACTGAAATGCAACCCGTATAATGCATGTCAAAAAGTTGTTTCCATACTTGGAAAGTATACAAAGCAAAATGATACATTTCCGTTGATGTTACTGCTAGTATCTTTGAGATAAAACATTGTTTTACCCCTCCTCACCAAACCCATATATTGTACAGAAATTGGCCTGTGGAATCTGAAGTGTATGGACAGATAATCAGTAAAGCTACTCTTGTttctttttttattcatttttctcTCTGATCTACTTGTTGTACAGTTCAGTCTTCTGCAGGTTTTAGTGTAGCTAACCTATGCAATTCTACAGTAGTGCTCATATTGTTCTAAGACACCACAGTGTTGTATTCAGTAGAGGTCTAGCCTTGCCAGTAGAGTTTCAATTGTGTTGCTGTGAAACGGCTGTACCTAGTGTGTTTGCTAGGGGAAACGGTGACAAGTATATAATTTGATTAGATGTAAACTGTTGACATGAACAGCAAATGTTAATATGTGAAAGCTAAGAGTTATCTAGTGTGTACCTTCTATTTTTATGaaataagaaaaaaagaaaacaaagggACCTTAAATAAACATGTAAATGTGGACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559308 lncRNA downstream 42683 27791875 ~ 27793746 (-) True G492208
TU559307 lncRNA downstream 59482 27776556 ~ 27776947 (-) True G492207
TU559335 lncRNA downstream 60624 27775598 ~ 27775805 (-) True G492235
TU559329 lncRNA downstream 65622 27770598 ~ 27770807 (-) True G492229
TU559279 lncRNA downstream 107138 27729057 ~ 27729291 (-) True G492195
TU559383 lncRNA upstream 25589 27892868 ~ 27893100 (-) True G492279
TU559388 lncRNA upstream 29003 27896282 ~ 27896518 (-) True G492284
TU559394 lncRNA upstream 42287 27909566 ~ 27909770 (-) True G492289
TU559400 lncRNA upstream 46996 27914275 ~ 27914474 (-) True G492295
TU559402 lncRNA upstream 47768 27915047 ~ 27915297 (-) True G492297
XM_036981825.1 mRNA downstream 16227 27817576 ~ 27820202 (-) True LOC118965072
XM_021605975.2 mRNA downstream 23547 27798270 ~ 27812882 (-) True LOC110525654
XR_002473790.2 mRNA downstream 99405 27734995 ~ 27737024 (-) False LOC110525653
XM_021605970.2 mRNA downstream 112426 27714131 ~ 27724003 (-) True LOC110525649
XM_036979758.1 mRNA downstream 112427 27714131 ~ 27724002 (-) False LOC110525649
XM_021605986.2 mRNA upstream 160897 28028176 ~ 28044286 (-) False LOC110525658
XM_021605984.2 mRNA upstream 160897 28028176 ~ 28044300 (-) True LOC110525658
XM_021605987.2 mRNA upstream 177526 28044805 ~ 28105169 (-) True LOC110525659
XM_036979773.1 mRNA upstream 243689 28110968 ~ 28180719 (-) False LOC110525660
XM_036979772.1 mRNA upstream 243689 28110968 ~ 28180720 (-) True LOC110525660
TU559292 other downstream 1127 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 99451 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 592236 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 969271 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 1284802 26547222 ~ 26551627 (-) True LOC110525619
TU561692 other upstream 1543936 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 1611376 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 1634974 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 1808044 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 2659407 30526686 ~ 30527546 (-) True LOC110525714

Expression Profile