RNA id: XR_005052050.1


Basic Information

Item Value
RNA id XR_005052050.1
length 3352
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC118964856
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28266817 ~ 28273722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagtgtgtagtgtatGTTCTGTAGGTTTACAGGATTATATCGAGGGGGTCTCTGAAATAGCGATCACAGGCCGTAATCTTGTCCAGCTCTCGGGCCTTATTCGCCATAGGCCAGGCTGGCCCAGTGGAGTGCTGTTGGGATATGAACTAAGATGAAGTGCCTCTGTGGACAAACTGCATCCTTTGTCCATAACGTAGCTGGGCCATCTATGTCTATAGAATCCTCTCTACTGTTGCTGTGTGTGGCTACACTAAGCCCAATGTGGGTCCTCTTTTCATTCATTACCAGACAGATTGCCGCCCAGAGAGACATTCATTGTGCAGGGCAGTGTATTGGCATTTTTACGGCTGTGATATTGTTTTGCTGCCATTTCTATGACTTTTTCATATGATGGTTTTCTCCTTAAAGAGGATTCCTCTTCAGAAGGTTCTAACAGTGATAAAAGCCATGGTTCAGAAGGACTTACGGCTGTCAATTAGCTTTTCAATGAGGGGACAGCATACCAAAGCATATAATATGTGATTCTCTGGTCTGCCATGGCTATCCTGGTTCCGTCTATGAATCCAGCAGGATTTCACCCAATTTGGACTTGTATCTTCTTTTGTTTTTTAGGAACTCCTTTAGCAATCTGATATCATTAATTTACACATTGAAACAATTTATAGATAATTTCTAGATGTTACTGTATGTTTTCCTTGTGGATGGTAAATAGAGTAAACTTTTCTCCCATTATCTAAGCCAGTGTCTATCCAACATTGGTCATCACCATCACACACTCCCACTCCGCTATCCGTACCAGAGGATAAACAGAGCAGCTCCTACCCAGTCACGGCACCCAGCCTCTCCCTGAATTGCATGCAGTCAGTCAGTTTCCACCCAACCAAGTCTCTCACATTCTATTCTCCTCTCACTCCAAGTTATTGATTGCCATGAGTTGGGTGACATCATCACAGATTTGATCATCAGCCTTATGGATTTTTTTGACAGACAATTTGCCTTGTCCTGTGCTTGGCCATACGTCTCGCCATCCATACCCCAAAATGTACACCGGGACAGGGTATTTTCTGGGAGTCCTCTCTTCAGTGATGGATCGTTGGAATAGGATTGCTGGATGGAATAGGACCAATGTAAAGACAATCGACTATGTGACTGTGGGactgctgatgtttaggccatgGTCTTGTCAGGGAGGGACCAGCTCTCACCCAATGGGAGGAAGGAGACATGTgaggacacacacatatacacactctgGCACTCTGCCAAGTAAATACCCTGACTTCAGCTGGTTAAATGGTTTTAAAGTGTCAAGGGTTTATAATTAAGTATTGACTTTCATTCCGTCTGACATCCCTGAATGGAATATTCATGCATGCTTTTAATTTGTATGTTAGTAGTCTTTTATTTTCCTTATTtattgtctgactgttttaactGTTTACCATCAACATAAGCATGCTAAAAGCAAACACTCACAAATACATTAAACAAAAGCTGCTACAGTATTTCAATGCACCGTCAGCATGTTTGTCAGAACAGAGCAGTAGTGTACATTTCTCTGTGCATTATTATGTTGTGCAGTCTTTTGTTGGAAATATACATTTCACCAGTATGTACATACTATCCCAGCTCATCCTTGGAACAGTGAACTCCAACAAAACGCTCCATTTGCCCCCTAATGCCACGCTGAGGTCATTTTTCCTAACCTACTATCTCAATGGTGTTATAAACTCAGCTTAAATCAATAAAATGATGTAAAAGACCAGTGGGCCAGATTCAGGCTGGGAGCCCATAAGGTCAGTATGAAATGTGAAAATGCGCCTTCCTTTCCCATCAGACCTCTGCCTTGGATTCCCTCAGCCTCTAAAGTGTAGCATCTACATGCTGCTGAATACTGATGATCACAGCTCTGCCTGCCTGCTACTACACTCTGCTGGGTATACTCTCTGGTGGCTTGTATGTTGACATATTATGGGGTGGGCCTATGTAATGTACAAACATATGGTTCAACTGTAAGGTTAGTCTACTCTATCGGACATCAGAGCAGACATGGGTGGCTAAATGTTGTGTCAGCTTCTGTGAATATTCAATTAAATGGAAATGTTCCACATTCAGACAATATCAGCACATAAATACTTATAAGTATTTATAAGGACATCATGATTTATGTAGTCTATTTTCCTTTCTGATGCGTATTGCCGGTGGTACAGTAGGTAGTTACATTCTTGTTACCATGAAGTGCTTTATTCCACAAACTATGACTGGGTCCTTTAAAGTTGCTCCTAAGAGATTCATAAAtatgttttcatttgtttttagagAATTGAAGAGTGTGCTAATAGAGATTTCTCTTGTTCAGGGGAGCTGACACAATGTTATTCTGTTTTTAATAATGCATCCATTGTTTTACAAGGCAGCATCTTCTGGACTGTTTCAGTTACTGTGATCAGTTTGACTGTTTTACCAAACAATAACTTGTTTACTATCCCCCTCTTTAATTTGAATGTGGATGTGTCTTGAATGGATGTTTGATACCACCTTCACACATACGCACATCCATGCACATCCATGCACATCCATGCACACGTTCACGCAGGCGAAGTTTGAACAATTTGAAGCTTGACACCTACTTATTATTTTGGTTGCAGTTATTTTATTGAGTATATCTATTTTACTATGTTTTATGTTTATTTGTGCTGTAGCAACCTCTTCAGATCTTTGTTCATTGTCCATGTTCTGTTTTGTAGGAAATGGTGGCTAGTTTGCATCATTTTGCTTTGATAAGGACTATTTCAAAGACATTTAAAATATAATCATGGATTTCTTATTGATTAATAGTTGTATCAAATATTCAGAATGCACTTAAATGTTCAATGCCTCTTAATGAAGTTATTCAAATGTTGTACTCTTATTTTAAGGTAGAAAATGCATAATTTGTCATCAATCTTCCTCTGTAGTATGTGTTGATTGACTGACACTCAATCTGCTGTTAAGTAATTATGGACTGATATGACAAGGATTCATTAGTTCAAATGTATAGATAGATTATCCTTGTAATCTGGACCCTGTCAAATGTCCTTAATTAGTTTACAATCAATAATGTATGGGTCTGCGTGGAAAGTGCAAGGCCCACTCAATAATATACCTATACTAGTTGATTCATGGTATTGTCAACATATTGTAATGCCCTCCATGGATTGCTCTTGGTTTAGAGTTCAACATGAGGCCAGTAGTATTGTTAGATGGAGTGGACTAATGCTGTTTGTTAAATTTTCTGGttgaacacaaaaaaaacactacattCATGTAATGCTTCCAGTTTTGTAAATAAATGTTGACCACTGCAATTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560076 lncRNA downstream 9183 28256722 ~ 28257634 (-) True LOC110525663
TU559721 lncRNA downstream 81009 28185570 ~ 28185808 (-) True G492596
TU559719 lncRNA downstream 84954 28181496 ~ 28181863 (-) True G492594
TU559694 lncRNA downstream 113749 28151359 ~ 28153068 (-) True G492569
TU559681 lncRNA downstream 137579 28128345 ~ 28129238 (-) True G492556
TU560055 lncRNA upstream 3153 28276875 ~ 28280919 (-) True LOC110525665
TU560119 lncRNA upstream 103245 28376967 ~ 28377231 (-) True G492960
TU560122 lncRNA upstream 105938 28379660 ~ 28379912 (-) True G492963
TU560057 lncRNA upstream 128146 28401868 ~ 28402253 (-) True G492902
TU560138 lncRNA upstream 132322 28406044 ~ 28406324 (-) True G492979
XM_021605995.2 mRNA downstream 6966 28256488 ~ 28259851 (-) False LOC110525663
XM_021605991.2 mRNA downstream 19580 28193508 ~ 28247237 (-) True LOC110525662
XM_021605992.2 mRNA downstream 24244 28193508 ~ 28242573 (-) False LOC110525662
XR_005052051.1 mRNA upstream 2941 28276663 ~ 28309727 (-) False LOC110525665
XR_005052052.1 mRNA upstream 2941 28276663 ~ 28309727 (-) False LOC110525665
XM_021605998.2 mRNA upstream 12786 28286508 ~ 28309727 (-) False LOC110525665
XM_021605999.2 mRNA upstream 12786 28286508 ~ 28309727 (-) False LOC110525665
XM_036979776.1 mRNA upstream 39591 28313313 ~ 28352746 (-) False LOC110525666
TU559292 other downstream 431515 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 529839 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 1022624 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 1399659 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 1715190 26547222 ~ 26551627 (-) True LOC110525619
TU561692 other upstream 1137493 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 1204933 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 1228531 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 1401601 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 2252964 30526686 ~ 30527546 (-) True LOC110525714

Expression Profile