RNA id: XR_005052052.1


Basic Information

Item Value
RNA id XR_005052052.1
length 4457
RNA type mRNA
GC content 0.42
exon number 16
gene id LOC110525665
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28276663 ~ 28309727 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGCCTAATATCTGGTATTTGGCAGGCCCAACCATTCATAATCATTCCGCCCAGTCTCAGACAAGTCACAGACGTGGGCTATAATTAGAAGGTATAACATCTAGTTGGCTACACTAGCCATAACTTGTATATAAACGCTACTAGCCTATATATTTCGGTGTTTGGATGTTTTTAGGTCTGGATTAGGCGTCTGTGGTTTTTCATAGTAAAAGGTAGGCTTATTTGTCAAATATAAATACCAGTATAAAAGAAACTGAGCGCCGTGGGAGGAGCTCCGGAGTTCATGACACAACATTGACAACAAGATCTGGTCGCGCGGGGCAGGACGAACTGTTCTGGCGCAAGCAGCACATGCACCGTTCCAGGTTTAAATCGGTTAAGAACCTAGTCCAGTTATCATGAAGAGATATACAAATCATTTCCTGCCTGCTCTGCCATTTCTTAGCAGACATGGGAGATAACTCCTTCCCAAGGATACAGAATCAAGACAGCGAACGACACCAGCCATCAACAAAAAGCGGGCAAGAGAAGAGCAGAAATAAATGATCAGGATTAATTAATTATACAACCGACTCCTTAAAGGCAGATTATAGCGAcctatacaatacaccaccataatCAGTAAACTGTTTGTAGCTAACACACGTACAACATTTTACCATCGCGTGTACAAGAGTTCTTCCTGCAGACTATTTCTGGAATTCGATCGTAATCATGGAAACGTACACTGACGTTCTACTTGTCACCGCAAATGTTGGGTCATTATTCGACAATGTGGGTGAGATTGAGAGTGACTGGCTTCGAGAATTATTTGGGACTGTCCAGAGTCACAAACCACGCTTCATCGCCCTGCACTTCCAGGAGGTTGGAGGCAAAGACTACATGGTCAATATGGGCCATGCGGAGAACTTCTTCTGGAACATTGAGTCCAGTGAGGAAATGAGGGACTTTGACAGGGTCTGCATCTATGTGGACAACCACTTTAAGAACGTGGACAGCTTCACGGCCCTGGGAAGCATGTACTTCATCCACAAGTCATTGAAAAACATCTACCAATATGATTTTAATGtTAAAGATTTTAAAGCAGTGTCTGGACAAAACAAGCATGTGGGATCCCTGGATGGGGTAACCACAATGGAGAAAGAAAAATTCCCGAAGAATTTCTGGCccgatTTCAAATGGTCTAGGAAGGGCTTCATGAGGACCCGGTGGATCATTCACAACCAGGGTCTGGACCTAGTCAACGTACACCTTTTCCATGATGCCTCCAACCTCATTGCCTGTAATGCCAGTCCCTCCATCTACTCAGCCAACCGCCAGAAGGCCCTCAGATATGTCATCAATAGGATATCAGAGACCAGCTACACTCCACTCCCCTTCTTCCTGTTTGGGGATTTCAACTTCCGCCTGGACACCCTTAGCCTGGTCCAGaacttGTCCACTTCAGCAGAGGTGCAGACAGTGAAGAAGGACAGCAGTAATGAGGTGGAGAAAATAATCTGTGAGGaaaaggacaatgaccacaagATTCTTCTCCATATTGAGACCAAGTTGTTTGCCTACCTGCACCAGGCAGTGTTCAGAGAGGACAACGGCAGAGCGATTTTGAAATATGACAAGGAGATTGCAGCCTTTCAAGATGTCATTGCCGAGGAAGAAATCCTGTTTCCACCCAGttaCCCCTACAGTGAAGACTACACTAAACCCACCCAGTACATGAACACCCGCTGCCCCTCCTGGTGCGACCGTATCCTCATGTCTCACACTGCCCAAGACATCATCCACAGGACTGTTTTCTTGTCCTTTGCACTGAAGACAAATGGCCATTGACAAGGATCCCTCTGTGTGTCTATCCAACATTGGTCATCACCATCACACACTCCCACTCCGCTATCCGTACCAGAGGATAAACAGAGCAGCTCCTACCCAGTCACGGCACCCAGCCTCTCCCTGAATTGCATGCAGTCAGTCAGTTTCCACCCAACCAAGTCTCTCACATTCTATTCTCCTCTCACTCCAAGTTATTGATTGCCATGAGTTGGGTGACATCATCACAGATTTGATCATCAGCCTTATGGATTTTTTTGACAGACAATTTGCCTTGTCCTGTGCTTGGCCATACGTCTCGCCATCCATACCCCAAAATGTACACCGGGACAGGGTATTTTCTGGGAGTCCTCTCTTCAGTGATGGATCGTTGGAATAGGATTGCTGGATGGAATAGGACCAATGTAAAGACAATCGACTATGTGACTGTGGGactgctgatgtttaggccatgGTCTTGTCAGGGAGGGACCAGCTCTCACCCAATGGGAGGAAGGAGACATGTgaggacacacacatatacacactctgGCACTCTGCCAAGTAAATACCCTGACTTCAGCTGGTTAAATGGTTTTAAAGTGTCAAGGGTTTATAATTAAGTATTGACTTTCATTCCGTCTGACATCCCTGAATGGAATATTCATGCATGCTTTTAATTTGTATGTTAGTAGTCTTTTATTTTCCTTATTtattgtctgactgttttaactGTTTACCATCAACATAAGCATGCTAAAAGcaaacactcacaaacacattAAACAAAAGCTGCTACAGTATTTCAATGCACCGTCAGCATGTTTGTCAGAACAGAGCAGTAGTGTACATTTCTCTGTGCATTATTATGTTGTGCAGTCTTTTGTTGGAAACATACATTTCACCAGTATGTACATACTATCCCAGCTCATCCTTGGAACAGTGAACTCCAACAAAACGCTCCATTTGCCCCCTAATGCCACGCTGAGGTCATTTTTCCTAACCTACTATCTCAATGGTGTTATAAACTCAGCTTAAATCAATAAAATGATGTAAAAGACCAGTGGGCCAGATTCAGGCTGGGAGCCCATAAGGTCAGTATGAAATGTGAAAATGCGCCTTCCTTTCCCATCAGACCTCTGCCTTGGATTCCCTCAGCCTCTAAAGTGTAGCATCTACATGCTGCTGAATACTGATGATCACAGCTCTGCCTGCCTGCTACTACACTCTGCTGGGTATACTCTCTGGTGGCTTGTATGTTGACATATTATGGGGTGGGCCTATGTAATGTACAAACATATGGTTCAACTGTAAGGTTAGTCTACTCTATCGGACATCAGAGCAGACATGGGTGGCTAAATGTTGTGTCAGCTTCTGTGAATATTCAATTAAATGGAAATGTTCCACATTCAGACAATATCAGCACATAAATACTTATAAGTATTTATAAGGACATCATGATTTATGTAGTCTATTTTCCTTTCTGATGCGTATTGCCGGTGGTACAGTAGGTAGTTACATTCTTGTTACCATGAAGTGCTTTATTCCACAAACTATGACTGGGTCCTTTAAAGTTGCTCCTAAGAGATTCATAAAtatgttttcatttgtttttagagAATTGAAGAGTGTGCTAATAGAGATTTCTCTTGTTCAGGGGAGCTGACACAATGTTATTCTGTTTTTAATAATGCATCCATTGTTTTACAAGGCAGCATCTTCTGGACTGTTTCAGTTACTGTGATCAGTTTGACTGTTTTACCAAACAATAACTTGTTTACTATCCCCCTCTTTAATTTGAATGTGGATGTGTCTTGAATGGATGTTTGATACCACCTTCACACATACGCACATCCATGCACATCCATGCACATCCATGCACACGTTCACGCAGGCGAAGTTTGAACAATTTGAAGCTTGACACCTACTTATTATTTTGGTTGCAGTTATTTTATTGAGTATATCTATTTTACTATGTTTTATGTTTATTTGTGCTGTAGCAACCTCTTCAGATCTTTGTTCATTGTCCATGTTCTGTTTTGTAGGAAATGGTGGCTAGTTTGCATCATTTTGCTTTGATAAGGACTATTTCAAAGACATTTAAAATATAATCATGGATTTCTTATTGATTAATAGTTGTATCAAATATTCAGAATGCACTTAAATGTTCAATGCCTATTAATGAAGTTATTCAAATGTTGTACTCTTATTTTAAGGTAGAAAATGCATAATTTGTCATCAATCTTCCTCTGTAGTATGTGTTGATTGACTGACACTCAATCTGCTGTTAAGTAATTATGGACTGATATGACAAGGATTCATTAGTTCAAATGTATAGATAGATTATCCTTGTAATCTGGACCCTGTCAAATGTCCTTAATTAGTTTACAATCAATAATGTATGGGTCTGCGTGGAAAGTGCAAGGCCCACTCAATAATATACCTATACTAGTTGATTCATGGTATTGTCAACATATTGTAATGCCCTCCATGGATTGCTCTTGGTTTAGAGTTCAACATGAGGCCAGTAGTATTGTTAGATGGAGTGGACTAATGCTGTTTGTTAAATTTTCTGGttgaacacaaaaaaaacactacattCATGTAATGCTTCCAGTTTTGTAAATAAATGTTGACCACTGCAATTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560076 lncRNA downstream 19029 28256722 ~ 28257634 (-) True LOC110525663
TU559721 lncRNA downstream 90855 28185570 ~ 28185808 (-) True G492596
TU559719 lncRNA downstream 94800 28181496 ~ 28181863 (-) True G492594
TU559694 lncRNA downstream 123595 28151359 ~ 28153068 (-) True G492569
TU559681 lncRNA downstream 147425 28128345 ~ 28129238 (-) True G492556
TU560119 lncRNA upstream 67240 28376967 ~ 28377231 (-) True G492960
TU560122 lncRNA upstream 69933 28379660 ~ 28379912 (-) True G492963
TU560057 lncRNA upstream 92141 28401868 ~ 28402253 (-) True G492902
TU560138 lncRNA upstream 96317 28406044 ~ 28406324 (-) True G492979
TU560141 lncRNA upstream 99338 28409065 ~ 28409279 (-) True G492982
XR_005052050.1 mRNA downstream 2941 28266817 ~ 28273722 (-) True LOC118964856
XM_021605995.2 mRNA downstream 16812 28256488 ~ 28259851 (-) False LOC110525663
XM_021605991.2 mRNA downstream 29426 28193508 ~ 28247237 (-) True LOC110525662
XR_002473805.2 mRNA downstream 34090 28193508 ~ 28242573 (-) False LOC110525662
XM_036979776.1 mRNA upstream 3586 28313313 ~ 28352746 (-) False LOC110525666
XM_021606002.2 mRNA upstream 3586 28313313 ~ 28352749 (-) True LOC110525666
XM_021606003.2 mRNA upstream 46311 28356038 ~ 28370016 (-) True LOC110525668
XM_021606009.2 mRNA upstream 93357 28403084 ~ 28414473 (-) False LOC110525671
XM_021606008.2 mRNA upstream 102014 28411741 ~ 28414473 (-) True LOC110525671
TU559292 other downstream 441361 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 539685 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 1032470 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 1409505 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 1725036 26547222 ~ 26551627 (-) True LOC110525619
TU561692 other upstream 1101488 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 1168928 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 1192526 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 1365596 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 2216959 30526686 ~ 30527546 (-) True LOC110525714

Expression Profile