RNA id: XM_021606011.2


Basic Information

Item Value
RNA id XM_021606011.2
length 2314
RNA type mRNA
GC content 0.49
exon number 7
gene id arid5a
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28414737 ~ 28425225 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGCTGTATTGTAGACATGATCAACCAATAATAATCCATTGACAACGTCTTATTCCGAGGTGTGCTAAATTAGAGAAGCTTCTTCAGTAAAGTGGTGCTGAAACAAAGTAAACCTTCTCCAAGTCGCGAGTCAAGGGATTATTTTGTAAATGGTATTTGATTCTGAAGGGGGGCGAGACACCAGTCAGAGACCAGTCATGGAGGAGGGCAGAGGTGTGGAGGGGACACTGAACCAGAATTCTGCAGCGATGGAGATTTCTGACTCAGCCAGTGAATGTGAGGAGCCTCCCAGGTCTAGCCcaatggagacagaggagaggtcctTCATAGCCAATTTGCACTGTTTCATGAAGGACAGAGGCACACCCATAGAGAGGATACCACACCTGGGCTTTaagcagaTTAACCTGTGGAAAATCTAcaaaactgttgagaagcttgGCAGTTACGACTCTGTGACAGCACGACGGCTGTGGAAGAATGTGTATGATGAGCTGGGGGGCAGCCCAGGCAGCACCAGCGCTGCTACCTGTACCCGCAGACACTATGAGAGGCTTGTTTTACCCTTTGAGAGACagttgaggggagaggaggacaaaCCTCTGCCTCCAAGCAAACCACGCAAACAGTACAAGAGGAGCCCTGAGGGAAGCAAGTCTGAGGGCAAGAGGAAGAGGCCCCATCTGGAAAAGGAGACGGACTCTGAGGGCCAGCTACACTCTACTCCATCGTCTCCATGGACCACTCCATCTGAAAGGCTCCACCCAGACCGTCCTCCACCAAACAATGAGACTACCGTCAGTGACGACCTCTCTTCCTCTGCGTACTCCCTATCCCAGCCAGGTCAGGTCCAGTCTTCTGCTTCAGACATCATCTCCCCTCTGGAGAAGAAGAAGCGTATGGCCCAGGCCAGCCTGAGTCAGTCCCAGGACTGTCAGAGCCCCAAACAGGAGGACCGTAAGGGCAGGCCCTCTGTGATCCACTGCTCCCAGTCCCCAGGGCTGGTCCGTTCTAGCCGGACACGCACTACCTCGGagggctctcctctccctccgtcgTCCTCCTCTTCCCGTAGCCCATCCCCCTACTCCATCTCCTCTGAGGACTGTCCAGCACTAACTGAAGAGAGGCCCCCAGTTCCAAAACCAGAAGTACCTCTTCCTTTTTCCAGCAACCCAATATCTGCCTGCAGTGGGGTCCACAAGCCTCAGAGCTGCAGCCCTGATGTCAAGAAATATGTTGGCTTCCCTGGAGGACAAAGAGATTTCCCTCAGGTCAGCCCTCTACTGGGTGACACAGTTTCTATCAAAGGTCAGAGTAAAAACTCTGTATGGAGCCCTGTCTGCAATGGGAGTAACAGACGTCCAGCTCACCAAATATCCCCACCAACGTCCTGCACGTATACTGTTAGGTCTTGCTTGGTTCCATCCACCTCCAGTTTCACTAAAGTTTATCCCAAATCTATAGAGCCTTTGCGGCCTATACCCTTTCGACCAGGTTACACATTCCATCAGAACCCAAATAGGCCCATGTTACATGATAATGATCTGATCTATACTAAGAAACTACATATGGTCCCTCGACATTATCAGACAGAGAAAAAGGAGAAGTCCACGACAATGTTGCCAAAGCCACTTCCAACGCAACAACCTGTATTCCACTCTAATGTCAGCATACCAGTGTCCTACCTCGTCCCAGCCTATGACAGGACAAGGGGAGACTCTGGACAGAAGCCACCTGTACACCCATTATTTCTATCCACCAACAGACTGCCTCAGTCCCAGATCAACCCTATGTACCGTCATGCCGCAACGGGACACACCAATGCTTCCCCTTATGAGCCTGCTCTCTACTCCTATCCCTATTCCATTCCTATGTTGAATCCCCATACTGGTTACAGCATCACTGGCGTGCATTATCCTCAAACTAGGCTGTGATAGCCCAGCCTACCTCTCGCAGAGCTTATAGACAATGTGACAAGTCAAATGGAGATAATGACAGTACCTGCTTCGTTCTAGACATTTTCTAAACTTGACTCGAACACAGCTGCATTCTATGTGAGTGATCAACAGAGAAACGTTGTTGTGATTATTATCCCGAGATGGGCTCCCCACTGTGGCAACTGATAGAATTGCACTAATAAAAAGGACTCATCTTTCTGTATTTGTAACAATAGCCCTCTGGTTTACTGCTATGTACGTTTTTTTATTGTATGATAAAATTATTTTGCATGGAAATAATATGAAACAACACAGATGTAATTGTTTATTCTGAATAAAATCTAAAATAATTCCTGTCTGATCCAAGTCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560141 lncRNA downstream 5458 28409065 ~ 28409279 (-) True G492982
TU560138 lncRNA downstream 8413 28406044 ~ 28406324 (-) True G492979
TU560057 lncRNA downstream 12484 28401868 ~ 28402253 (-) True G492902
TU560122 lncRNA downstream 34825 28379660 ~ 28379912 (-) True G492963
TU560119 lncRNA downstream 37506 28376967 ~ 28377231 (-) True G492960
TU560145 lncRNA upstream 539 28425764 ~ 28425969 (-) True G492986
TU560041 lncRNA upstream 4853 28430078 ~ 28435167 (-) True dbnlb
TU560153 lncRNA upstream 26265 28451490 ~ 28451787 (-) True G492994
TU560160 lncRNA upstream 44763 28469988 ~ 28470245 (-) True G493001
TU560206 lncRNA upstream 89690 28514915 ~ 28515918 (-) True G493040
XM_021606009.2 mRNA downstream 264 28403084 ~ 28414473 (-) False LOC110525671
XM_021606008.2 mRNA downstream 264 28411741 ~ 28414473 (-) True LOC110525671
XM_021606003.2 mRNA downstream 44721 28356038 ~ 28370016 (-) True LOC110525668
XM_021606002.2 mRNA downstream 61988 28313313 ~ 28352749 (-) True LOC110525666
XM_036979776.1 mRNA downstream 61991 28313313 ~ 28352746 (-) False LOC110525666
XM_021606015.2 mRNA upstream 7134 28432359 ~ 28448181 (-) False dbnlb
XM_021606017.2 mRNA upstream 7134 28432359 ~ 28448182 (-) False dbnlb
XM_021606013.2 mRNA upstream 7134 28432359 ~ 28448183 (-) False dbnlb
XM_021606018.2 mRNA upstream 30365 28455590 ~ 28467805 (-) False ube2d4
XM_036979778.1 mRNA upstream 30365 28455590 ~ 28467865 (-) True ube2d4
TU559292 other downstream 579435 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 677759 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 1170544 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 1547579 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 1863110 26547222 ~ 26551627 (-) True LOC110525619
TU561692 other upstream 985990 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 1053430 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 1077028 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 1250098 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 2101461 30526686 ~ 30527546 (-) True LOC110525714

Expression Profile