RNA id: XM_036979790.1


Basic Information

Item Value
RNA id XM_036979790.1
length 8414
RNA type mRNA
GC content 0.58
exon number 24
gene id LOC110526490
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29070716 ~ 29398888 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATAAGGCGAGAAAAAAAGGAACAAGAATTTGACAACATGGCGCACTTTCCTTGAGAAAAGTTTCTCTTAAACGCAAACAAACCACGTTTAAGGTGAATTTTTTACAGTTTCTCGACTATCTGACTAAAACCGACAGACTTTGGAAAGAATTGAAGACTTGTTGGTGGTGAAAAAACTAACTTTGCATTACATTTAGTGACGTTTATCATGGGATGAGAGAAGCTCGTTGCAGAAGCCAAGTAACCTACATACACACAGGATGGAGAAGCAAGCAACTTTAAAGGAAAAGTTTTCAATCTTCGGCTCCCGGACAGTGGGCAGAGCTGCGCAGCGTGAAGCTGAAGAGAAAGGGGGCCGATGTGGCCTCAACAAGGCAGAGTTCATGGAGAGAGTTCAGCAGAGCAACGAGGCCTGCCAACGCGGTGACTTCCAGGCTGCCGTGAGTCTCTATGGCGACGCCCTTCGAGCCGACCCACAGAACTGCATCCTCTACAGCAACCGCTCAGCAGCCCTTCTCAAATTGGGACGCTACCAGGCTTCCCTGGACGACGCTGTCAAGGCCTGTCTACTCAACCCCAAGTGGCCCAAGgcATACTTCCGACAGGGTGTTGCCCTTCAGTACCTTGGTCGCCATGCCGACGCGCTGGCCGCCTTCGCCTCGGGGCTGGCCCAAGACCCCAAGAGCCTGCAGCTACTGGTGGGCATGGTGGAGGCTGCCATGAAGTCCCCACTACGAGAGTCACTGGAACCCACCTACCAGCAGCTGCAGAAGATGAAACTGGACAAGAGTCCGTTCGTGGTGGTGTCAGTGATTGGTCAGGAGCTGCTGACAGCAGCCCACCATACCGCCTCCGTGGTGGTACTGGAGTCCGCATTAAAGATCGGCACCTGCAGCCTCAAGCTGCGCGGCTCCGTCTTCTCAGCCCTCAGCAGTGCCCACTGGTCCCTGGGCAATACCGAGAAGAGCACCGGATACATGCAGCAAGACCTGGAGGTCTCCAAAACACTAGGTGACCAAACAGGTGAATGTCGTGCCCATGGCAACCTGGGCTCAGCATTCTTCTCCAAGGGGAACTACCGCGAGGCCCTGACTAACCATCGCCACCAGCTGGTCCTGGCCATGAAGCTCAAGGACAGGGAGGCAGCTTCTATGGCCCTGAGCAGCCTGGGTCATGTGTACACAGCCATCGGGGACTACCCTAATGCCCTGGCCAGCCACAAGCAGTGTGTCCTACTGGCCAAGCAGTCCAAGGACCAGCTGTCGGAGGCACGAGAGCTGGGCAACATGGGCGCCGTCTACATCGCCATGGGCGACTTTGAAAACGCTGTCCAATGTCACGAGCAGCACCTGGGCATCGCCAAGGCCCTGACCAGCAAGAGGGAGGAGGCCCGTGCCTACAGCAACCTGGGCAGTGCCTATCACTACCACCGTAACTTTGACAAGGCCATGTCCTACCACACCCATGTGCTGGAGCTGGCCCAGGAGCTGGAGGAGCAGCCTATAGAGATGAGGGCGTACGCTGGACTGGGGCACGCTGCACGCTGCATGCAGGACCTGGAGAGAGCCAAGCAGTACCACCAACAGCAGCTGGCCATCGCTGAGGGCCTGAAGGACAGAGCTGCAGAGGGAAGAGCCTCCTCCAACCTGGGCATTATCCACCAGATGAAAGGAGACTATGAAACTGCACTGAAACTGCACAAAACCCACCTCTCCATCGCCCAGGAGCTCACTGACTATGCTGCTCAGGGCCGGGCCTACGGTAACATGGGCAACGCCTACAACGCGTTGGGGGCCTTTGACCAGGCTGTGCGCTACCACCGCCAGGAGCTACAGATCTCCATGGAGGTCAACGACCGAGCCTCCCAGGCCTCCACCCATGGTAATCTGGCCGTTGCCTACCAGGCTCTGGGGGCCCACGACCGCGCCCTGCAGCACTACCAGAACCACCTCAATATCGCCCGCGAGCTGCGAGACGTCCAGAGTGAGGCTCGCGCCCTCGGCAACCTGGGGAACTTCCACTGCTCCCGGGGAGAGTTCCCCCAAGCCGTGCCCTACTACGAGCAGTACCTCCGCTTGTCCCCTGACCTCCAGGACATGGAGAGTGAGGGGAAAGTCTGCCACAACCTGGGCTACGCCCACTACTGCCTGGGAAGCTACCAGGATGCTATCAAGTACTATGAGCAGGACCTGGCTCTGGCTAAGGACCTGCATGACAAGCTGAGCCAGGCCAAGGCCTACTGTAACCTGGGACTGGCCTTCAAGGCTCTCGGTAACTTCACCAAGGCAGAGGAGTGTCAGAAGTACCTGCTCTCTCTAGCCCAGTCTCTTAATAATGCACAGGCCCGCTTCAGAGCCCTGGGCAACCTGGGGGACATCTTTGTCTGCAAGAAGGATGTGACCGGAGCTATCCAGTTCTATGAGCAGCAGCTAGCCCTGGCTCACCAGATGAAGGAGCGCAGGATGGAGGCATGTGGCTACGCTTCCCTGGGTGCCACCTACAGACTGGTGCAGAAGTACGACAAGTCCTTGGGCTACCACACCCAGGAACTGGAGGTGTACCAGGAGCTAGGCGATGTTCCCGGGGAGTGTAAAGCCCACGGCCACCTGGCAGCTGTCTACATGGCCCTGGGGAAGTATGCCATGGCCTTCAAGAGCTACGAGGAGCAGCTAGAGCTGGGCCGCAGACTGAAGGACCCGGGCATAGAGGCCCAGGTCTACGGCAACATGGGCATCACCAAGATGAACGTAGGGGTGATGGAGGAGGCTATAGGCTACCTGGAGCAGCAGTTGGCCACCTTGCAGCAGCTGAGTGGCAACGAGGCTGTACTGGACCGGGGCAGGGCCTATGGTAACCTGGGAGACTGTTACGAAGCCTTAGGAGACTTTGAGGAGGCCATTAAATACTACGACCAGTACCTGTCTGTGGCCCAGAGCCTGAACCGCATGCAGGACCAGGAGAAGGCTTACCGAGGTCTGGGCAATGGACACAGGGCGATGGGTAACCTGCAGCAGTCCCTGGTTTGCTTTGAGAAGCGGCTGGTGGTGGCCCATGAGTTGGGGGAGTGTGGCGGGAAGGCCCAGGCCTACGGGGAGCTGGGGGCGCTCCACAGCCAGCTGGGGAACTATGAACAGGCCATCTCCTGTCTTGAGCGCCAGCTAGGCATTGCCCGCGATACCCAGGACCGCCCACTAGAGGGCGACGCCAGCTGTGGCCTGGGTGTGGTCTACCAGTCCATGGGGGAGTACGAGACAGCCCTGCGCTGCCACCAGAGTGACCTGGAGATCGCAGAGGAGACGGGCAGTCCCGCCCGACAGGGCCGCGCCTATGGCAACCTGGGCCTCACCTATGAGTCACTGGGCAACTATGAGCGTGCGGTGGTGTTCCAGGAGCAGCATCTGAGTGTTGCAGCTCAGACCAACGACCTGGCAGCCAAGACCCTGGCCTACGGTAGCCTGGGGAGGACACACCATGCACTGCAGAACTACTCACAGGCTGTCATGTATCTGCAGGAAGGCCTACGGCTGGCGGAGCAGCTGGCTCGGCGTGAGGATGAGGCTAAGATCCGCCATCGTCTGGGGCTGTCTCTGTGGGCCAGTGGGAACCTGGAGGAGGCCCAGCACCAGCTCTACCGAGCGTCTGCACTGTTTGAGACCATTCGTCACGAGGCCCAGCACAGCACCGACTACAAATTGTCTCTGTTTGACCTGCAGACGTCCTCCTATCAGGCACTCCAGAGGGTCCTCGTCAGCCTAGGCCACCATGACGAGGCGTTGGCGGTGGCAGAGCGGGGTCGGACACGAGCATTTGCTGACCTGCTGGTGGAGAGGCAGACAGGCCAGCAGGACTCAGACCCCTACACCCCAGTCACAGTGGAGCACATCCTGGACACGGTGAACAGCCAGAGGGCCCTGGTGCTCTACTTCTCCATGGCTGCTGGGTACCTGTACAGCTGGCTGCTGGCTCCAGGAGCAGgcatCCTGAAGTTCCATGAGGTGTACTTGGGAGAGGGCGTGCCAGAGGGCGGGCCAGACCTCCatgagggtgggggagggggtgtGGCCAGCGGCTCATCTTTGGAGCAGCACATTGCCAGTGCTCGGGAGGTCCTGGGAGTAGAGTCCTACTACAGCAGgggtTGTTCCagcagtgagacagagagtgaggcaGGGGACCTGTTGGACCAGCAGTTTGAGGAGCTCAACAACAAACTCAACTCTGTGACTGACCCCACAGGCTTCCTCCGCATGgtgtccagaaacaacctcttCAACAGGAGCTGCCAGAGTATGACCAGCCTGTTCAGTAACACAATGTCCCCAGCCAAAGATGGCTGCTCCTCTCTGCCCCGCCGACCAAGCAGCCTCAGCAAACCTCCTCTCCGTGCCCTCTACGACCTGCTCATCGCACCCATGGAAGGGGGCCTGATGCATTCCAGTGGTCCCGtgggcagacacagacagctggtgttggtgttggagGGGGAGTTGTACCTCATCCCCTTCGCCCTGCTGAAAGGCAGCTCCTCTAATGAGTACCTGTATGAACGCTTCAGCCTCATCGCTGTGCCCTCCATCCGGGGCATGGGGACCATCTCCAAGAGTCATTCTCGGCGGGCGGGGCCAGCTTCCTGCGGGGGCGTGTCCATGGCGGCGGTGGTGGGGAACCCTCGTCTGCCGTCGTCTGTGATGGACCGCTGGCTGTGGGGGCCCATGCCCTCTGCCGAGGAGGAGGCCCTCATGGTGTCTGAGTTGCTGGGCTGCCAGCCCCTGGCTGGATCCTCTGCCACCAAGGAGAGGGTGATGAGTGCCCTCACCCAGGCCGAGTGTGCCCACTTCGCTACCCACATCTCATGGAAGCTGGCCGCCTTGGTGCTCACACCCAACCCAGAGAGTGTACCCGGCGGGGCGGggactggagggagaggggcagggggagggaggagaggcagcggAGGCAGGGGCAGGAAGGGCTCGTTTGGGAGCAGCTACACCATCCCAGAGAGCCTGCACCTGCAGGATGATGGGAGCGACGCAGAGAGTATCTGTGACAGCCCTCCCCTGCAGGAGTTCCTACTTACCGCTGCTGATATACTGGACTTGAGGCTGCCTGTCAAACTGGTGGTGCTGGGGTCATACCAGGAGTCCAGCAGTAAGGTGACAGCAGACGGTGTGGTAGGTCTGACCAGGGCCTTCCTGGCTGCTGGGGCCCAGTGTGTCCTGGTGTCTCTGTGGCCTGTTCCTGTGTCAGCCTCCAAAGTGTTCGTCCATGCCTTTTACACCGCTCTGCTCAACGGGACCAAAGCCAGCGCTGCCCTCGCAGACGCCATGAAGACTGTCCAGAGCAGCAAGCAGTACTCCCACCCCTCCAACTGGGCAGGTTACATGCTGATTGGTAATGATGTCAAGCTTAACAGCCCCTCGTCCCTGATTGGCCAGGCTCTAGCAGAGATCCTACAGTATCCAGAGAGAGCACGGGATGCTCTGCGAGTCTTACTGCACCTGGTGGAGAAGTCTCTCCAGAGGATTCAGAACGGCCAGCGTAACTCCATGTACACGTCCCAGCAGAGTGTGGAGAACAAGGTGGGGGGCGTCCCAGGCTGGCATGCCCTGCTGACCGCTGTGGGCTTCCGCCTGGACTCGGCTGGCACCGGCATCCCTGCTGCTGTCTTCTTCCCCACAGCAGATCCTGGAGACAGGCTGCAGCAGTGTAGCACCACCCTGCAGTCAATACTTGGTCTACCGCCCCCAGCTCTCCAAGCCCTGTGTAAACTCATCACCGCCTCTGAGGCAGGCGAGCAGCTCATCAACCGGCTCCACCAGGTGCTGGTCCAGCTGCAGACAGGGGAGAAGGAGCAGGACTTCTCTCTGCTGCCCATCCAGGTGTCCATCAGTGTGCAGCTCTGGAGACTGCCAGGGTGCCATGAATTCCTGGCTGCACTAGGGTTCGACCTGTGTGAGGTGGGGCAGGAGGAGGTGGTACTGAAGACGGGGAAGCAAGCCAACCGCCGCACCATGCACTTTGCCCTCCAGTCCCTACTGGCACTATTTGaCTCCACAGAGCTGCCAAAGCGTCTCAGCCTGGACAGCTCGTCCTCCCTGGAGTCCTTGGCCTCGGCCCAGTCTGTCTCCAACCCCCTACCGCTGGGCTACCCCAACCCACCCTTCTCCCCACCCTGCCTGGACAATCTGGCCTCAGATGCCATCTCCGTCTACAGCCTGAGCTCCGTGGCCTCCACCATGAGCTTTGCGTCCAAGTCAGAGTGTGACTTCCTGGGCCATCGACAGCGTGGTGGGGCCACAGCACACTTCTCTGCCCACAAACACCCACACGTTCCCCGCAGTCGCTCCTCTCCTCACGGGGCGGCTGCAGCAGTAGGAGGGGGTCGGGGAGatgacgaggagtatgaaggcTTCTCCATCATCAGCAGTGAGCCTCTGGGAAGCCACTGtgactccctgcctctacctctgggTCATGGTCAGCGCCACCTCCACCGCGGGGGCAGGGGTGTTGTTGGGGGGTCCAGCTCAGGCACTGGGCGGGGTTACCAGGTGTCTGTGTCGTCACGAGGCAGTGTCAGCACCCCCACCTCCCCTGTCAAGACCAGCCTGGTTCCTAGCTCCAACTCTCCCTTCCAGAAGGTGCCAGGCAAGGTGAGCAGCTCAGACACAGGTGAGTCGGACCAGTCCAGCACTGAGACAGACAGCACCGTCAAATCCCAGGAAGAGAAGACTGTTCCTCTGGATCCCCAAGAGCTGGCCCAGAAGATCCTGGAGGAGACCCAAAGCCACCTGCGGGCAGTGGGGAGTCTACAGCGGGCTGGGGTTGAGGGGGCTGCAGCTGGGGCCACAGCCCGGAGCTCTGCCTTCCGCTCCTCAGAGACCAGCGCCTTCAGCCGTCCCAGTAGCAGCGCCAGTGTCCGCGCCCAGTACTCCCCACGACCCAAACCTCCATCCCGCTCTTCCTCTCTGCAGAAGATCAGCTCTGGTTACAACAGCCCTGCAGCCTCGGAGACCTCCCTAAAGGATAGCAGTCACCCCTCCCCCACCCTGGACAGCCATGCCCAGTTCAAGCTAAAATACCCTAGCTCCCCCTATAGTGGGCACATCTCCCGCTCTCCCAGTAACGTGTCCCCCAGCTCTGGCCACCAGTCCCCAGCTGGCAGTGCCCCATCTCCAGctctctcctactcctccacGGGCTCTGCCTGCTCCAGCCCTGCCGATGCCCCAGACCTGGACCGCCTCAGACGGGGAGTAATTGATGAGAAGGTTGTGGCCATCCACAACCTGAAGACATTCTGGGCCAATGCAGCAGCccagcaacaacagcaacatcTGGGTCCAGTCCGTGCTCTCCGTGGCACCCCAGGATCCCTGGTCTCTGCCAAGAGAGATGTGCTGAGCCTTCTGAACCTCTCCCCACGACACTGCTCCCCCAGCGACGCCCAAGACAGCCTGGAGCTGCGGGAGCTGGGGCTGCACTCGCTGGACAGGGGCAGCAAGAACCCCTCCAACGGACACAACCCCAGAAAGATGGCCCCCTCGCCCACTATTTCCACTAGCAGCAGCCCTGGTGCTCGCTCAATCAGACTACCTGCTGGCAATGGATACAAGTTCCTCTCCCCTGGCAGGTTTTTCCCCTCCTCCAAATGCTGAGACACTTTAAAATGGTCCTATTGCCTGTATTTTGCTATCCTGTGTACTGGGGGAGTAGGGCATTTTCCGGAGGGCCACTATTAGCCCATCGAACTTGATTGACAATGAAAAGGTTTTGATCAGCCAATGAGAGTGATCCCTCAGAGGCTCATGAATGCTTAGAAAGTGTCTTGTCGTTGTGCCCATAACACTGTAAATGGCAATGAGAAAGACTCAAAGACCTgatactgtgtttgtgtgtatgtgtgtgtcaggtaGACTTCAATGCCAATCGGTATTTCCTCCCCAAAAATGTGTATTTGTGTGGGCCAAGATGAAACCGCTCCAACTGGTCTCCTccattctatttttgtttaaatcgaatgattattgttattattatttgttattattattattaatattattattattattttgtaaatTAAATCCAGTGTTTCACAATCAGTACTAAGCGTTTTTATATTATTAAAAAAGTGAACAAAACTGTTCCATGTAAAGATggataaagtaaaaaaaaaaaaaagctgtaaTATTTTTTATTGAAATGGAAACTGGCTTTTTGCCTGATTTCTTTGTGAATTGAGTGTCTGCTCTGAAGCATGGATTCTCTTACTATTCAATGTTAAGTACCATGTATGACTTTTTAGCCCATGATTTTTATTTTAATTAAACATGGAAACTtcatgacaaccatctctgtcaTTTATCAGTATAACTGTTTCAATAAAAATCATGTTTGCTTTCTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU561432 lncRNA downstream 29913 29040411 ~ 29040803 (-) True G494154
TU561396 lncRNA downstream 79983 28989410 ~ 28990733 (-) False LOC110525678
TU561397 lncRNA downstream 79983 28989550 ~ 28990733 (-) True LOC110525678
TU561408 lncRNA downstream 84789 28985711 ~ 28985927 (-) True G494130
TU561400 lncRNA downstream 99505 28970906 ~ 28971211 (-) True G494122
TU561679 lncRNA upstream 952 29399840 ~ 29407716 (-) True G494378
TU561695 lncRNA upstream 53696 29452584 ~ 29453016 (-) False LOC110525681
TU561706 lncRNA upstream 56471 29455359 ~ 29455568 (-) True G494401
TU561707 lncRNA upstream 60393 29459281 ~ 29459582 (-) True G494402
TU561709 lncRNA upstream 65003 29463891 ~ 29464214 (-) True G494404
XM_021606022.2 mRNA downstream 704 29023208 ~ 29070012 (-) False LOC110525679
XM_021606024.2 mRNA downstream 704 29023208 ~ 29070012 (-) True LOC110525679
XM_021606021.2 mRNA downstream 60000 28989407 ~ 29010716 (-) False LOC110525678
XM_036979788.1 mRNA downstream 60000 28989407 ~ 29010716 (-) False LOC110525678
XM_036979786.1 mRNA downstream 514703 28552264 ~ 28556013 (-) True zgc:153044
XM_036979793.1 mRNA upstream 12316 29411204 ~ 29483533 (-) False LOC110525681
XM_036979794.1 mRNA upstream 12316 29411204 ~ 29483533 (-) False LOC110525681
XM_036979795.1 mRNA upstream 12316 29411204 ~ 29483533 (-) False LOC110525681
XM_036979796.1 mRNA upstream 12316 29411204 ~ 29483533 (-) False LOC110525681
XR_005052053.1 mRNA upstream 12316 29411204 ~ 29483533 (-) False LOC110525681
TU559292 other downstream 1235414 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 1333738 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 1826523 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 2203558 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 2519089 26547222 ~ 26551627 (-) True LOC110525619
TU561692 other upstream 12327 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 79767 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 103365 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 276435 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 1127798 30526686 ~ 30527546 (-) True LOC110525714

Expression Profile