RNA id: XM_036979798.1


Basic Information

Item Value
RNA id XM_036979798.1
length 2558
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110525684
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29502192 ~ 29520980 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGAACTAGAGGCAACTAATTTCCGGTTTTTAGGACTACAAACTGGAGAGCTCTATTGAGACGGCTGTTACTTTTTTAATTTATGTATTAATATCATTTAGTCTATTTTTGATATGATAAACAAACGTTTACTGCAATTTGTTCTGTGCTTGTCATTGCTCAGTTTGCTAAGTGCCCATGATGTGAAGATGTCAGCAGGGACCGACGCGCAAAACGCCAACTTCTGCCACAGGACGAGTTTCACTGGACTAGGACACACGCGCCTAAGCTTCCTCCGAAATATGGTCGGGACTCATACATTGATGTTATATGTGAGCGAATGGTCAGAGAAGCAGCTTGTAAAATGCTCAATTAACAACGACCCTGTAGCCACTGCCAGTTACCTGTTTCGTTGCCACCAAACGCGCCCGGAGAGCCTTGTGGAATTATCCCTCTTCAATATCAGGGCGTTGTTGAGTCCAGACAACCTGTGCCCACTGAGTCCTGTCGATGGATTTATCAAACAGACGAAAAATTACCCATTGGAGCAACAACATATTTCGGGTGCAAAATCCCGTAGGAAACGCGCGTGGGTATTTCCTGGGACACTTTGGTGTGGCACTGGAAGCAAAGCGATTGACTACAAGCAGTTAGTGAACTATGGTGTTTTCAATCCCAACTTCTTCACCATCTCACACTGTGACTGTGACAAAAGGTTTCGCCAGTGCCTCCAGCGTGTAAATGATACCATCTCCAATATGGTGGGCTTCAGCTTCTTCAATCTCCTCAAGATGCCCTGCTTCGAGTTCACTCCCAGGAGTCAATGTACTGAGCTTAACTGGTGGGGAATGTGCAAGGTGGCCAAGGTGGCCCCATATGCAGTCTTCAAAAATCCCAAAGATTACACCATCAACCGCACGACAAGTAAACATGGTGGCAGCAGTGACCCCCAAACCTCAGCAGGCACCGGGGAAAACCTGGTTACAGTGAGACCCTTGTCTAGCCCAACCAGGTTAGTCCCCAAAGGGAACCGCCCCAAGCTATTTTCCCCTTCACGGGACTGTGTTACAAGAGGTCCTCCCAGAGGAGACACCTTTCAGATCAAGCACAGGAAAGGATGCAGCAGGGGCAAGAAAACATTCACAACTCAAACAACCACAAGTCAAACACAGACCAGCACGACCAGCACGTCAGGGATGCAGACAACTGCATCCCTGATACCGAGGAGTGCATCACAAAAACAGAAAACCACACCCACAACTCAGAGAACTGCTTCGAAAATGATTTCAACCACATCACAGGTAAAAATGAAAACTGCTACACAAAAGACTGGATCAAGAACTGAAAAAACGATCTCACATCAAAATCAAGCTACAACAAAGAAAAAAACACGGTCACGACAGAGGACAACATCAACACCAAAGCCTTCACCCCATCCACAGACAACAACTTTAACAACCACAACTCTTATACCCAAAAGTCCCAAACTCCCAAAGGTCCTTAGGAAACTTCACCATTGTGGCCCTCCAAGAGGAGATACCTTTCAGCCTCGCCGCTGGAGGGGGGAACGAGGCAAAGCCTGTTTGGAACAGATAACTAAAACACCAACGACCATATCCTCAGCAAACAAGACTGCATCACCAACCCAGAGGAGAATATCTCAAACTCAGAGAACAATGCCCTCAAATAAGAGAACAACATCTGCAACTGCGATGACCTCATCTACCCTTTGGAAGAACACAATTACTAAAAGGACCGCCTCCTCAAAGCTAAGGACCACACCTCTAATACAAACCCCTACTGAGAGTGCACCATCTATGACAACAGATAATATGCTTCTTTGTGGCACTCTCAAGCATTTGGATGAATGTAAATACAAAATACCCCCTTTAGAGAAGAGATATGATCTCCACAACATGGGATCAAAGACTGTGTACCATTGTGATTGCACCCACAGGCTGGCTGATCAGATCAGACACTTGGAGAAGACCACAATTCTCCAATCCCTCCTGCAGGACTTTGTATCTCTATCCTGCTTCAACGTGCCGAGTGTGCAAGACTGTCATGGAGGGAAAAGTTGTACTGCTGGATTTTCCCAAGCCACTGACCTAATTCAAGTCCTTAAAAGCATGGAGGAAAGAGGAAGACTTAATGCTCAGAGCACAAGTAAAGACTCAAAAAGAGGGACTCCTATTCGCCTCTACAAGCGATGTCTAAGGATCATTGAGTCCAAGAAGCCTTGACTGATTATTCCCAAACATCAGCACCCTTAAGTACCAGTTACTAGAATGGGAATGCAATGCATCTGTCCAACATCACCCTCTGTTGTGTTTTttaaagatttttaagccttaagaTGATAAATGTGGCAGAAGGACTTGATTTGCTGCTGTTCGGTATAGGAGGGAGTTCCTTATACCTTCCAACTTTTCCCCAAATCTTTGACCTCAACTGTAAATAGTGATCCACAACTAGAGTTGTACATAATTCTCCTGCTGAGGGTACTATGATCTCTGACAACAATTTAATATATTTATATTGAGTCTTTTTACTTCTAGATTAAAACCCTTGAATATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU561709 lncRNA downstream 37978 29463891 ~ 29464214 (-) True G494404
TU561707 lncRNA downstream 42610 29459281 ~ 29459582 (-) True G494402
TU561706 lncRNA downstream 46624 29455359 ~ 29455568 (-) True G494401
TU561695 lncRNA downstream 49176 29452584 ~ 29453016 (-) False LOC110525681
TU561679 lncRNA downstream 94476 29399840 ~ 29407716 (-) True G494378
TU561810 lncRNA upstream 90146 29610823 ~ 29611022 (-) True G494496
TU561812 lncRNA upstream 95896 29616573 ~ 29621455 (-) False G494497
TU561814 lncRNA upstream 96586 29617263 ~ 29621455 (-) False G494497
TU561815 lncRNA upstream 101465 29622142 ~ 29623212 (-) True G494497
TU561822 lncRNA upstream 104363 29625040 ~ 29625323 (-) True G494503
XM_036979793.1 mRNA downstream 18659 29411204 ~ 29483533 (-) False LOC110525681
XM_021606028.2 mRNA upstream 6106 29526783 ~ 29575598 (-) False LOC110525685
XM_021606031.2 mRNA upstream 6106 29526783 ~ 29575598 (-) True LOC110525685
LOC110526522 mRNA upstream 74739 29595416 ~ 29596809 (-) True LOC110526522
XR_005052054.1 mRNA upstream 129526 29650203 ~ 29653776 (-) False LOC110525693
XM_021606056.2 mRNA upstream 185382 29706059 ~ 29754385 (-) False LOC110525694
TU561696 other downstream 18846 29478655 ~ 29483346 (-) True LOC110525681
TU561692 other downstream 86878 29411215 ~ 29415314 (-) True G494389
TU559292 other downstream 1666890 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 1765214 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 2257999 27216607 ~ 27244193 (-) True G491539
TU561865 other upstream 154646 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 1006009 30526686 ~ 30527546 (-) True LOC110525714
TU563013 other upstream 1024725 30545402 ~ 30549450 (-) True G495554
TU563022 other upstream 1054441 30575118 ~ 30575573 (-) True G495560
TU564400 other upstream 2140716 31661393 ~ 31661618 (-) True G496772

Expression Profile