RNA id: XM_021606031.2


Basic Information

Item Value
RNA id XM_021606031.2
length 4833
RNA type mRNA
GC content 0.46
exon number 19
gene id LOC110525685
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29526783 ~ 29575598 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTATAACCAGGTAAGAGTCCACTACTTGAGCATCAATGATAGCCTACATGGATGCAGGGGTCTCCTTCCCAGGGTACCAAGGGCTTACCACTGAGGAGAGGAGCCCACGCAGGGCGTATAGTGTGGAGATTGGTCCTGGCGACTGTGTTATAGGAATTGAGAAGCAccccttgacaaaaaaaaatggcTTGTGACAGGCGTTGCATGCGCAATGAACGGTTTGCGGTTGATTCCAGTACAGTATAAAATTAGTCCGCATCATTCCCTGACATCTTCCTTCAATAGAGGGCTGAAATCTCAGTTCCCTGCTATCATCAGATTTGGACAGAGGAGACTCTATCTGAGCCAGGCTACTGTGGAAAGAGGATTGTTGACCCTCCCTACCCACCCTGCTCATTCCCTGAGGACCCACCCTGTTGCTGGTTGGGTGTCGCTCCCCGCTCTGCCTGGTGGTGGCCCTCGGGAGCTTTGAGCGCATAGAGAGTTCAATAGTGCAGCAGCCATGACGAACGCAGTGATGGGCGGTAGCTCGGACCGCTGGGTGCCCAACGATAGGCAGATGAGCATGCATGCCAATGATAAGGAACAGGGCAACTGGACCAACCAGGCCAGGCCTGGTCCCGACGCTCCGGACCTGACTGACGAGGAGAAGGAGATCATTAACGGTGTGATCGCCCGTGCTGAGAAGATGGAGGCCATGGAGCAGGAGAGAATTGGGCGCCTGGTGAACCGTCTAGATGACATGAAGAAGACGGTGTGTGGGGACGGGGTGAACCGCTGTCTGCTGTGTGGGGAGCAGCTGGGTGTTCCAGGGGTCAGCTCAGTGGTTTGTGAGGACTGCAAAAAGCACATGTGCACCAAGTGTGGAGTGCAGAACGGCAGCCGGTCGCGTTCTGTGTGGCTCTGCAAGATCTGCAGCGAACAGCGAGAGGTGTGGAAGCGATCTGGTGCCTGGTTCTTTAAAGGCTTTCCTAAGCAGTTCCTGCCCTCGCCCATGCCCATCTCCAAGTCCAAAGAGTCAAGTGCCCAGCGAGCCCCAGAGCTAGCATCATCTGACCCCAGGGCTGCAGCTGGTCATCCCCAATCACAGGCCAGAGGACCAGAGGAACTGGGGCATGCTGGCAAACCACCTGTGGCCCCTAAGCCGTCAGATGTTCGCATGGCCACTGGTGGGACTGGTCATGGTTACAATGAGGGAGGTGCTCAGAACAGCCCAGTGGTGCTGCAGAAGGCTGTTCCAGTCCAGAGCTCCAGGCCCCCTCCAGCAGCATCGGCCCAGCAGGCTCCACTGGAGACGGAGGGAGGTGGCTACTCCACTAGCGGTGCtccagtggaggagagagtgcCTCCTGCATtgcgggaggagaggagacagccaaCCACCTACAACCCCGTTCCTGCTCGACAACAAGCCCCTCCGCCTGAGGAGGAGGATGCAAACAGCTATGACTCAGATGAGGCCACCACTCTGGGCGGCTTGGAGTTCAGCTTGCTTTATGAGCAGGAGAACAACAGTCTCCACTGTAGCATCCTCAAAGCCAAGGGACTGAAGCCCATGGACTCCAACGGACTGGCTGATCCCTATGTCAAGCTGCATCTATTGCCAGGGGCCAGTAAGTCCAACAAGCTACGCACCAAGACCCTGAGAAACACCCGTAACCCTGCCTGGAACGAGACCCTGGTCTACCACGGACTCACAGACGAGGACATGCAGCGCAAGACTCTCAGGATCTCTGTCTGTGATGAGGACAAGTTTGGGCATAATGAGTTTATCGGAGAAACTCGCATTGCGCTGAAGAAACTCAAGATCAACCAGAAAAAAAACTTCAACGTGTGTCTTGAGAGAGTTGTCCCTACAAAGAAGACTGCAACAGCTGGAGGGGCTCGAGGCATTTCGCTCTATGAGGATGAGGGTGGGAAGGAGGTTGGAGATGTGGAGGAGCGGGGTCGTATCTTGATCTCCCTCACGTACAGCACCCAGCAGAATCGTCTCCTCGTGGGTGTGGTGCGCTGTGTTCACCTGGCCGCCATGGATGCCAATGGATACTCTGACCCATTTGTCGAAATATGCCTGAGACCTGATATGGGGAAGAAGGCCAAGAACAAAACAAATATCAAGAAGAAGACCCTAAACCCAGAGTACAACGAGGAATTTAGCTATGACATCAAGCACAGCGACCTGGCTAAGAAGACCCTGGACATCTCAGTGTGGGACTACGACATTGGGAAATCCAACGATTACATCGGTGGGTGCCAGCTGGGCATCACAGCCAAAGGGGAGCGGCTGAAGCACTGGTATGAGTGCCTGAAGAACAAGGACAAGAAGATAGAGCGCTGGCACACCCTGTTGAATGAGAATCCTGTCAACAGCAACTAACCCCTATTAGAATGAGCAaagtcctcatcaacactcagcCCCCTCTCCTTTCTCACATTACCCTCTCTACCTTCCCCAAGAACCTTTAATATTGGACTAACCAGTAGTCTTCCTGTCTGGCTGTCTGCATTCTTTCCTGCCCTCAACCCAACCCACCACATGCACCTTTCCATCCTCCCCTGTTGTCCCAGATGTGATATTCCCATCTCATGTCTCTCCCCCTTTACTGAGACTTATCTGGAAATACTCCTCCAGAGGCAAAACATGGTATACTTTCAAATCATCCTTCAAAAACAACTTAGGGATTCAACAATTTAaggcaaaaaaaaatacataaatacttTTGAAGATAATAAAAACAACAGCTTGACATTGCATTATATGGTTGCATTGAGATAATCATAGCAGTTGATGATGTTATATATTGAATTTGACACATCCTAAAGAAAACCAATATTGAAATGCACTAGCACAAAAGATGTTGAAGCAATATGTAATTCTATGTGGGATTACAGCTGCAGCACCCATTGAACTATGAAGTTCATTAGACTGGCAGGTTGTAATCCTTGATTTCTTGTAAAATGACATCATGCAGCAGTATTATTACCACTTGTATGAGCATGCAAAACCACATGAAAACACACGAGGACCCACAGCTGCCCTCTGAACTATTTCAAATGTTCCAAAAGTCACATGTTTATTTAATGATATCTAATGAATATTATGGCATTCTCATGAAGAAGGTTTATATGCTGCAGAATTTCTGAAGTTAAAGATAAAAAATAATCTGGACTCTGGGAATGATTCACAAAAAAATGgacaaaaaacatatatttattattttttaatatattACATACTAAATAGGTAATTCAAGTAAatcatatgttttatttatttcagaatCAGTTTAAATATTTGGAATGATAGCACTCCTATTAGAAGAAACTGTGCTCACTTCATGCCAAGTGTTCACTTTGTCCTTATTTGAGTCATGTTTATAGAGGTAGAGGGAACATGTTCAATTTTTGATGAGAATGTTTGCACTGAAAAGTTGAAAATCTGGTTCAGTTCTTTGTTTACagtgaaggaagagaggagacaggaaaaCATTATTTCCCTGGCGAGTAATGAGAAGTATACTATGGCAGGTGTGGTCTAAATGAATGTTTACTGAGGTTTTTTACTGACTGACATTTTTACATTGAATGCACATGATCAGATTTTTCACTGACACTTAAAGCCTGCTCCACCTTAGTCACATTAAATAAGACAACATGGGTAAGGCTATGTCATAAGTAAATGTGCTGCTTGCATGCACTGTGCTCGTGACCCTTGTGTTTTCTGTGGCTGGAGCAGTCACACACCCCAACCCGCTCCTCCCCACAATGCACCCCCCTTTACCCACTCTGGCCGCCTCCATTCATGCGTCATCCTTTTTTGCTGCATCATTCACTCAAAGTTTTGGCGGGCGGCTGTTGACCAATTACCGTAATTCAAAGAAAGCACATCTTATACCATGGAATGACCTCAATTTATACAGCTGTTTGCAAGTTTCTCAAAAAAAACTATGCATGAGAGATCTTGTGGTTCATGATATATACATTGACTTAAGAAACAAATGATATTGTAATTTGATGATTTGTCTCTACCCCTTAACATTGGTCCAAATGCTTTTTTTTAAACACTGAAGTCCACAGCAACATACATGTATTTATGCAGCATGAATATCAGGACTATTATTATCATTAGGCTAACAATGGATAAATGAATTGATGTAGCGGGCTACTTTAGACCCTCTTCAGAGCATCCTCAGCTTGGTAATGTGACAGAGATGAGAGCTAGGACCCTGTACACAGAGCTCAGATAATGCTTAGAGGGCTGATTACTGGGCGTAAACAGTCAGCACATTAACAAATGGATCTCACCGACCAGTTCCTGAAGGTAGACGATTAAAGGAGATTCATCTCATCTATAGAGTGATGCATTTTCACCAAGTGCTCTGTCTCCTCCTTTGATGGGTAAAAACAGGGGCTCCCACAGCCATGAGAGCCTCTGCTGAACTGTATTGTCTTGCTGTCCACCAGTAGCTACAAtttcaacattattttgttgcGTATGCACTTGGTTTTCACTGGTTCTACTACGGTACTATTGTAGCCTACCTGTTCTGTTTTGTGACCAGTTTAGTGGTCTTTAATCTTAATTCGTTTCTATTCTCTTTTCTGGATAGTAAGTATCGCTAAAGAGGATACAACTGTTCTCCGTTTTGTTCTGCCTACTCTATTTAAATGAATTGTTTGTTGGTTTTATTTATGTCAATTGTAAATAAGTAGTGCATGGACTTGAGAGAAACAAAATATAAGTACCTGTGTATGTTTGCATGTAAAGATTTTACAAAGAGTTAGGTTTACACAGATCAATAAAAGCAAGGTCAGACTTGTGAGATCATTA

Function

GO: NA

KEGG:

id description
K19938 RPH3A; rabphilin-3A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU561709 lncRNA downstream 62569 29463891 ~ 29464214 (-) True G494404
TU561707 lncRNA downstream 67201 29459281 ~ 29459582 (-) True G494402
TU561706 lncRNA downstream 71215 29455359 ~ 29455568 (-) True G494401
TU561695 lncRNA downstream 73767 29452584 ~ 29453016 (-) False LOC110525681
TU561679 lncRNA downstream 119067 29399840 ~ 29407716 (-) True G494378
TU561810 lncRNA upstream 35225 29610823 ~ 29611022 (-) True G494496
TU561812 lncRNA upstream 40975 29616573 ~ 29621455 (-) False G494497
TU561814 lncRNA upstream 41665 29617263 ~ 29621455 (-) False G494497
TU561815 lncRNA upstream 46544 29622142 ~ 29623212 (-) True G494497
TU561822 lncRNA upstream 49442 29625040 ~ 29625323 (-) True G494503
XM_036979799.1 mRNA downstream 5803 29502192 ~ 29520980 (-) False LOC110525684
XM_036979800.1 mRNA downstream 6095 29502192 ~ 29520688 (-) False LOC110525684
XM_036979797.1 mRNA downstream 6106 29502192 ~ 29520677 (-) False LOC110525684
XM_036979798.1 mRNA downstream 6106 29502192 ~ 29520677 (-) False LOC110525684
XR_002473811.2 mRNA downstream 111441 29414761 ~ 29415342 (-) True LOC110525683
LOC110526522 mRNA upstream 19818 29595416 ~ 29596809 (-) True LOC110526522
XR_005052054.1 mRNA upstream 74605 29650203 ~ 29653776 (-) False LOC110525693
XM_021606056.2 mRNA upstream 130461 29706059 ~ 29754385 (-) False LOC110525694
XM_021606052.2 mRNA upstream 130461 29706059 ~ 29754400 (-) False LOC110525694
XM_021606053.2 mRNA upstream 130461 29706059 ~ 29754401 (-) False LOC110525694
TU561743 other downstream 23392 29502253 ~ 29503391 (-) True LOC110525684
TU561696 other downstream 43437 29478655 ~ 29483346 (-) True LOC110525681
TU561692 other downstream 111469 29411215 ~ 29415314 (-) True G494389
TU559292 other downstream 1691481 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 1789805 27734996 ~ 27736978 (-) True LOC110525653
TU561865 other upstream 99725 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 951088 30526686 ~ 30527546 (-) True LOC110525714
TU563013 other upstream 969804 30545402 ~ 30549450 (-) True G495554
TU563022 other upstream 999520 30575118 ~ 30575573 (-) True G495560
TU564400 other upstream 2085795 31661393 ~ 31661618 (-) True G496772

Expression Profile