RNA id: LOC110526522


Basic Information

Item Value
RNA id LOC110526522
length 1104
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC110526522
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29595416 ~ 29596809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGGTGAGACCATCCTGGGCCTGAGAGAGAATCTGACCCAGACCATTGGGTGTCTGGAGGAGGCGGACTCCTCTGTGGCTGTCTCGTCTGGTGGCAAACTGTTCCTCCGCTTCATCAGCCTCACATCACTGGAACACCCTGATCTCTCTCAATGCAAGAAAGCtatggtagagagaggagagctcTTTCTAAAGAAAATATCCCTTTCCAGGAGTAAAGTAGCAAAACTGTGCCATACCTTTATAAAGGATGGAGCTAAAATACTGACACACTCCTCCTCTCGGGTGGTTCTTAGGGTACTGGCGAGTGCAGCAGCCGACAAGAAACGCTTCATTGTCTATGTCACTGAGTCACAACCAGACTGCAAGGTACTGTGTATATTCTGAATTGGATAACACACCAATTAGACAATCTTATGTTTGTCCTTGGATGATACCAGTTACAACACATCATGGGTTACCCTGTGTTCTGCAACCCACTTGACAGATTGGCACATATCAACTGACTGTGTGATCAAAGGCTCACAACAAGCCTTTCTACGTTGTGGCAGAAAGCTTCACATTTGTCAGACTCTTCCCTCTAAACCAGCAAGATGTCCCAGACCGATTTAAGGTAAATGCACTAAAATATGGTCATTAACAttcatctttaatttacaatctgtagaaacggagaatagaaaggttcagaacttttgtcaAACATTCCAGCACAGTTAAAGTATATGGCAATTAtaaaatcaaaactggatggttttctgagatagatgggaggagtgagggtagctgaagggtgggactaaacaAATACAAATTAAAAAAGAGAGAACTAAATGTAAAATATAGTTTCCGTAAAGTGTAGTATGTagacggaacaaaaatataaatgccaaCAATTCCAATGATTTTGAGTTagaaggaaatcaatcaattgaaataaattaagccctaatctatggatttcacatgaatgggcaaGGGTGCAGCCATTGGTGGGACTGGGGAGCCAGGcagaatgagtttttctccacaaaagggctttattacagaaagaactactcctcagtttcattagctgttcgtgtggctggtctcagaccatcc

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU561709 lncRNA downstream 131202 29463891 ~ 29464214 (-) True G494404
TU561707 lncRNA downstream 135834 29459281 ~ 29459582 (-) True G494402
TU561706 lncRNA downstream 139848 29455359 ~ 29455568 (-) True G494401
TU561695 lncRNA downstream 142400 29452584 ~ 29453016 (-) False LOC110525681
TU561679 lncRNA downstream 187700 29399840 ~ 29407716 (-) True G494378
TU561810 lncRNA upstream 14014 29610823 ~ 29611022 (-) True G494496
TU561812 lncRNA upstream 19764 29616573 ~ 29621455 (-) False G494497
TU561814 lncRNA upstream 20454 29617263 ~ 29621455 (-) False G494497
TU561815 lncRNA upstream 25333 29622142 ~ 29623212 (-) True G494497
TU561822 lncRNA upstream 28231 29625040 ~ 29625323 (-) True G494503
XM_021606028.2 mRNA downstream 19818 29526783 ~ 29575598 (-) False LOC110525685
XM_021606031.2 mRNA downstream 19818 29526783 ~ 29575598 (-) True LOC110525685
XM_036979799.1 mRNA downstream 74436 29502192 ~ 29520980 (-) False LOC110525684
XM_036979800.1 mRNA downstream 74728 29502192 ~ 29520688 (-) False LOC110525684
XM_036979797.1 mRNA downstream 74739 29502192 ~ 29520677 (-) False LOC110525684
XR_005052054.1 mRNA upstream 53394 29650203 ~ 29653776 (-) False LOC110525693
XM_021606056.2 mRNA upstream 109250 29706059 ~ 29754385 (-) False LOC110525694
XM_021606052.2 mRNA upstream 109250 29706059 ~ 29754400 (-) False LOC110525694
XM_021606053.2 mRNA upstream 109250 29706059 ~ 29754401 (-) False LOC110525694
XM_021606054.2 mRNA upstream 109250 29706059 ~ 29754401 (-) False LOC110525694
TU561743 other downstream 92025 29502253 ~ 29503391 (-) True LOC110525684
TU561696 other downstream 112070 29478655 ~ 29483346 (-) True LOC110525681
TU561692 other downstream 180102 29411215 ~ 29415314 (-) True G494389
TU559292 other downstream 1760114 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 1858438 27734996 ~ 27736978 (-) True LOC110525653
TU561865 other upstream 78514 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 929877 30526686 ~ 30527546 (-) True LOC110525714
TU563013 other upstream 948593 30545402 ~ 30549450 (-) True G495554
TU563022 other upstream 978309 30575118 ~ 30575573 (-) True G495560
TU564400 other upstream 2064584 31661393 ~ 31661618 (-) True G496772

Expression Profile