RNA id: XM_021606061.2


Basic Information

Item Value
RNA id XM_021606061.2
length 1930
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110525697
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29769924 ~ 29786928 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCAATATTTGTTATGTATGCGCACGCGCAAATGATGATAGTCATCCAGGTTATAGCTAGCGAGTAGAAGAGACTGGAAGAACTGGAATAGCACGTAAAGGAGAACTCCAATCTAATTTTAGGGAGTTCCTCACGTGTACCATGACGGCACGTGGCGCCGATTCGACTGATTTACTACCCTTGATGGGCTCTCTTTACACGGATAAAAGGAAACACATTATGGAATCATCCAAATCGCCCAGAAGCTCCAAACACCACCATTCACAATCGAGGTCACGCTCCAGGGACCGAAAGCGCAAATCAAGTGACAAAAAGCACAGACGAAGTCGGAGCAGGAGCAAAGAGGCACGAAGGAGGGACTCTGAGAAGCCATCAAAATCTCACAGCAAGTCGGATGAGCAGCCGGAGCAGActgagaggggcagggagagactTTCTGCAGAGAATGGGGAGGAGCGACACCGGCGCAAAGACAAGAAGGGGAGGAGCCACTCCAGGTCACTCTCACGGGACAGACGTCATCGCAGCAGAAGTCGGGACAAACGGAGATCGCGGTCCCCgcgggagaagaagaagagggccAGCTCCCGGTCGGGTTCAAAGACCAAACACCGCCACAGGAGCAGGAGCAAAAGCAGGGAGCGGAAAAAGAAGACTGATAAGGTGCGCAGAAAAGAGAAGAGTCGTAGCAGGTCTGTGAGCCCCCCGGCTTTCCGGGGCAGAAACACTGCCATGGACGCTCAGGAGGCGCTGGCCAGAAGGTTGGAAAGGGCAAAGAAACTGCAAGAGCAGAAAGAAAAGGAGATGTTGGGGAAACAGCAGCATCAGGAGGTACCTGCAGTTCCAGCTCCCCTGCTGTCTGACACAGTAGTAGTTGCTGCTGCAGTTGCTACCAACCCTGTCCTCAATGTGGCAGCTCTCCTGGCCTCAGGGACCCAGGTCACGCCCCAGATCGCCATGGCAGCGCAGATGGCAGCCCTACAAGCCAAAACCTTAGCAGAGACTGGCATTGCTGTGCCCAGTTATTACAATCCCTCTGCTGTCAACCCCATGAAGTTTGCAGAGCAGGAGAAGAAAAGGAAGAAGCTCTGGCAGGGAAAGAAGGAAGGGGACAAGTCACAGACAGCTGAGTTGTGGGAGAAGCTGAACTTCGGAAATAAGGACCAAAATGTTAAATTTCGTAAACTGATGGGCATCAAAGGGGAAGAGGAAGGTGGTGAGACCTCAAAGCCACTCAACGACGAAGGCCTGAAGACcctgcagcagcaggaggagatgtTCCATAACCTGGACGTTCAGTATGAGATGGCCAGGTCCCAGACCCACACTCAAAGAGGCATGGGACTAGGCTTCGGCTCTTCATTCTCACGGGGCATGGACACCATCTAATGCCAAACCATGCACTGGCTTGCCCTTGCTTTCTTTCTCATTGGTCTCTCCACTCACAGCTAGCACTCAAGCTTGCATGGATGTTGTTGCATTGGATCTGTCATTTTATTTAGAAACAATCTCACGTCTTTTAAACATTCTCATGTAAATAGATGCTGAGTTTTCCTCAGTGTACATCTTTTCTGAATTATGCAATAGTTTAATGACAGTCATGCTGGCTGGATTTAGATTTGTTTGAGAAATGTGATTGCATATCTgttttttacaaaaaaatgtatatattttggaTTGTTTGAAATGGAACATTATGTAGATCAAGTAAAATTATTCTGTTTACGTTCATTTACCAAGTTTCTTTACAAATTGATCTGAATCCTAATCTCAATATGTAGTGTCATCTTTGTTTCCTTTCTACTGAATGGGAATGTAAAACAGTGGATCATATTACTAAGATGTCTACTAGGCATCTGATGGTTTCATGGAAAGAATGAACAATAAACTTACATATGTTCTTGAAATAAAAGTCCATTTGTGTTGAAG

Function

GO: NA

KEGG:

id description
K24595 RSRC2; arginine/serine-rich coiled-coil protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU561879 lncRNA downstream 74186 29693030 ~ 29695738 (-) True G494556
TU561869 lncRNA downstream 89238 29680082 ~ 29680686 (-) True G494546
TU561867 lncRNA downstream 91807 29677502 ~ 29678117 (-) True G494544
TU561863 lncRNA downstream 95699 29673676 ~ 29674225 (-) True G494540
TU561860 lncRNA downstream 102387 29667282 ~ 29667537 (-) True G494537
TU561903 lncRNA upstream 11213 29798141 ~ 29798513 (-) True LOC118965073
TU561948 lncRNA upstream 55855 29842783 ~ 29848905 (-) True G494621
TU561951 lncRNA upstream 63401 29850329 ~ 29850535 (-) True G494624
TU561977 lncRNA upstream 113782 29900710 ~ 29925721 (-) True G494645
TU562023 lncRNA upstream 157932 29944860 ~ 29945081 (-) True G494691
XM_021606059.2 mRNA downstream 9552 29754902 ~ 29760372 (-) True LOC110525696
XM_021606051.2 mRNA downstream 15521 29706059 ~ 29754403 (-) False LOC110525694
XM_021606055.2 mRNA downstream 15521 29706059 ~ 29754403 (-) True LOC110525694
XM_021606049.2 mRNA downstream 15522 29706059 ~ 29754402 (-) False LOC110525694
XR_005052406.1 mRNA upstream 11581 29798509 ~ 29811783 (-) False LOC118965073
XM_021606065.2 mRNA upstream 76270 29863198 ~ 29870407 (-) False kmt5ab
XM_021606064.2 mRNA upstream 76300 29863228 ~ 29870390 (-) True kmt5ab
XR_005052057.1 mRNA upstream 183139 29970067 ~ 29974882 (-) True LOC118964857
XM_021606074.2 mRNA upstream 189230 29976158 ~ 29980778 (-) True LOC110525703
TU561865 other downstream 94351 29675323 ~ 29675573 (-) True G494542
TU561743 other downstream 266533 29502253 ~ 29503391 (-) True LOC110525684
TU561696 other downstream 286578 29478655 ~ 29483346 (-) True LOC110525681
TU561692 other downstream 354610 29411215 ~ 29415314 (-) True G494389
TU559292 other downstream 1934622 27827231 ~ 27835302 (-) False LOC110525655
TU562998 other upstream 739758 30526686 ~ 30527546 (-) True LOC110525714
TU563013 other upstream 758474 30545402 ~ 30549450 (-) True G495554
TU563022 other upstream 788190 30575118 ~ 30575573 (-) True G495560
TU564400 other upstream 1874465 31661393 ~ 31661618 (-) True G496772
TU564405 other upstream 1884050 31670978 ~ 31671927 (-) True G496777

Expression Profile