RNA id: XM_021606065.2


Basic Information

Item Value
RNA id XM_021606065.2
length 1740
RNA type mRNA
GC content 0.42
exon number 8
gene id kmt5ab
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29863198 ~ 29870407 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAAATAGTTGTTATTGTGGGCACGGTGCGTGGTGGTGACTTGGTTAGTCGGTTTCTGGTTATGCGTTTGTTTGCCAGTGTAACGTAACGAGGAACACGCGAACATTGCAAAAACTTATAACGTAAATTCGTGCATATACTGTCTAGTTTTTGTAGAGTTGAAATGGCGAAAGGGAAGAAAAAAATGCAGACCACCTACAAGAGACCCGAGGGAACCCTTCAGCCCAAACAAATCGAAAAGGAGACAAAGGAAAATAAACCAGAATTTAATGGGGATGCAGGTAATGGTCAGACCACTTTACCAAGTTTGTGGAGTCCCAGCAAACCCAAATCTCCTCTGTGCAACAACTCAAGTTCTCTCAGCCAAGAGGAAAATGTTCCTGAGAAATTGACTCCACAAACTGAGAAATCAACGCAAGGGAAAGTGAGACCGAATCAAGTTAACTCTCAAGCTGGTGTGTCTCGGCAAGAGGAGAATAAAGCGAAGACCCGCTTGGCTCCTCGAATCAGAGGAACAACTACCTTGAAGGGCGAGGTGGATCCAAAATCGCACCCCAATCCAGGGCTTGCGCAAGATGTCCCCATGCCCAAATCTAAGAGGAGGGCTAGTCAAAAAGCCAAAAAAGCACAAGGCAGTGCTGCCCAAAACAGGAAGGTCACAGATTATTATCCGATTAGACGGAGTTCCAGAAAAAGCAAAGCTGAATTGAAGAACGAAGAACAACGACAGCTTGATGACCTGATAAAACATGGAGTTGAAGAAGGACTGCAGGTAAAACATatagaagggaagggaagaggagtgTTTGCTGTCAGATGTTTCAAGAAGGGTCAGTTTGTAATTGAGTATCACGGTGACTTGTTGCATCTGACTGATGCCAAGAAGAGAGAGGCTCTGTATGCCCAAGACCCTGGGACTGGCTGCTACATGTACTATTTTCACTATCTCAGCAAAACCTACTGTGTTGATGCTACAAAAGAATCAACTCGTCTGGGAAGGCTGCTAAACCACAGTAAAAATGGCAACTGCCAGACCAAGCTCCATGACATGGATGGAATACCTCATCTCATACTGGTGGCTTCAAGGGACATTGAGGCAGAGGAAGAACTGGTTTATGACTACGGTGACCGTAGCAAGGAATCAATATGTGCTCACCCATGGCTCAAATACTGATGTTCCACCAGAGTATTCTCTCAAGAGAATGACTAGGTGCAGTCATTTCTTCAAAAAGAGAACCTgttctctttttgtttttttaaaaatcCATTCCATTGGTCCTAAGGTGCAAACTGCTTTCCGGTGAGACAAATTAAGTGTGCCTGTTTGGGCAAAACGGTGGCAGTATGAACAAGATGGAAGACAACCTTTTAAGATGGCACATGGGTTAAATTTGTTTTTAAAACTATCAATTTATTGCTGGATTTGGATGGAGTTTTTATACATATTAAGGCCAGTGTGTCCATGATGTGTGAAATATATTTAACATACTAGCTATTGTTTTTAGGTTGCTTTTATATAAGTGATTAATTTATCAAGCTATGTATGGTTCTAGTTGACGCAACAATATGTTGCATAGGAACGTCAATGCTCTCCTGGCTTCGGGGAGAACAGCTTATACTTGATTTGAAAATGTAGCTTTTGTTGCAATGGGTGAAACATCCAAATGAATTTTGAATAAAATGTAAGTTGCTCTTTTTGAACAAATGAACTGTGTACATAGACAAATCTTTTCATAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU561951 lncRNA downstream 12663 29850329 ~ 29850535 (-) True G494624
TU561948 lncRNA downstream 14293 29842783 ~ 29848905 (-) True G494621
TU561903 lncRNA downstream 64685 29798141 ~ 29798513 (-) True LOC118965073
TU561879 lncRNA downstream 167460 29693030 ~ 29695738 (-) True G494556
TU561869 lncRNA downstream 182512 29680082 ~ 29680686 (-) True G494546
TU561977 lncRNA upstream 30303 29900710 ~ 29925721 (-) True G494645
TU562023 lncRNA upstream 74453 29944860 ~ 29945081 (-) True G494691
TU562024 lncRNA upstream 75248 29945655 ~ 29945863 (-) True G494692
TU562025 lncRNA upstream 75755 29946162 ~ 29946429 (-) True G494693
TU562026 lncRNA upstream 77564 29947971 ~ 29948244 (-) True G494694
XR_005052406.1 mRNA downstream 51415 29798509 ~ 29811783 (-) False LOC118965073
XM_021606061.2 mRNA downstream 76270 29769924 ~ 29786928 (-) True LOC110525697
XM_021606060.2 mRNA downstream 76297 29769924 ~ 29786901 (-) False LOC110525697
XM_021606059.2 mRNA downstream 102826 29754902 ~ 29760372 (-) True LOC110525696
XM_021606051.2 mRNA downstream 108795 29706059 ~ 29754403 (-) False LOC110525694
XR_005052057.1 mRNA upstream 99660 29970067 ~ 29974882 (-) True LOC118964857
XM_021606074.2 mRNA upstream 105751 29976158 ~ 29980778 (-) True LOC110525703
XM_036981739.1 mRNA upstream 234958 30105365 ~ 30107695 (-) False LOC110525706
XM_021606082.2 mRNA upstream 319165 30189572 ~ 30191815 (-) True LOC110525709
XM_036979817.1 mRNA upstream 329187 30199594 ~ 30209590 (-) True sftpbb
TU561865 other downstream 187625 29675323 ~ 29675573 (-) True G494542
TU561743 other downstream 359807 29502253 ~ 29503391 (-) True LOC110525684
TU561696 other downstream 379852 29478655 ~ 29483346 (-) True LOC110525681
TU561692 other downstream 447884 29411215 ~ 29415314 (-) True G494389
TU559292 other downstream 2027896 27827231 ~ 27835302 (-) False LOC110525655
TU562998 other upstream 656279 30526686 ~ 30527546 (-) True LOC110525714
TU563013 other upstream 674995 30545402 ~ 30549450 (-) True G495554
TU563022 other upstream 704711 30575118 ~ 30575573 (-) True G495560
TU564400 other upstream 1790986 31661393 ~ 31661618 (-) True G496772
TU564405 other upstream 1800571 31670978 ~ 31671927 (-) True G496777

Expression Profile