RNA id: XM_021606136.2


Basic Information

Item Value
RNA id XM_021606136.2
length 4542
RNA type mRNA
GC content 0.48
exon number 19
gene id LOC110525736
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 31428660 ~ 31445370 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcccacatgcaggaacgcCCCGAATTACGGGCTGCAGTTGCACCCTTCTCACCTTGGAAAGCTCTCACTGACTGTTACCAGGCAGACAAAGTTCCAACATGGCAGCAACGGGGGACGCAGATGAGACTCAGTTgcaagagatggaggaagaggcaGTGATGGAAAATGAAATGgattcagatgaagaggagggttTGGGAATTGAAAATTCCGACGATGAAATAGACAATTCATCAGAAGACGAAAAAGAGAATGAAGCCGAAATTCAGCGTTTGGAGGAGCAGCTGTCCATCAATGCTTTTGATTACAACTGTCATGTGGACCTCATAAAACTCCTGAGGCAGGAGGGGGAGCTGCCTCGGCTGCGTAAGGCAAGGCAGAAGATGAGTGAGCTCTTCCCACTCACTGAAGAGATTTGGCTGGACTGGCTCAAGGATGAGATCCACCTAACAGAAGAGGAGCCGAACCGGGAGAAAGTCTATGAGCTCTTTGAGACGGCTATGAAAGATTATATCTGCCCTGAAATCTGGCTGGAATATGCCCAATACTCTATCGGGGGCATGGGACTGCCTGGTGGGATGGAGAAGGTGAGGTCCATCTTCGAGAGAGCCCTGACAGCTGTGGGGCTGCACATGACCAAGGGGGCGACAGTGTGGGAGGCCTACAGGGAGTTTGAGAACGCCATACTGGCAACTGTTCAGCCGCCCCCTGGCAGCGTTCCCACCCGCGAGCAGCAGGAGCTTCTGAACGCTCAGCTCGAGCGCATCCACACTCTGTTCCGCCGCCAGCTGTCCATCCCCTTAATGGACATGGACGGAACATATGCAGAGTATGAGGAGTGGTCTGACCAGGGGGTGTCTGATACAGTCTCCCAGAAGTACAAGGGGGCCCTGCAAGAAATGGAGAAGAGCAAGCCTTATGAGGAGACTCTGATGATAGCCGAGCCACCCAAGCTGGCAGAATATCAGACCTACATTGACTATGAGCAAAAGGAGGGTGACCCAGCACGGATCCAGATCATCTTTGAGCGGGCATTGTCAGAAAACTGCCTGGTACCAGACATGTGGGCAAAGTACACCAAATACCTGGACCGCCAACTGAAGATCAAAGACCTGGTCCTGTCCTCTCACAACCGTGCGGTCAGGAACTGCCCCTGGACCATGGGCCTGTGGAAGAACTACCTGCTGGCCCTGGAGAGGCATGGGGCTGACCACCACACCATCTCAGATGTTTTTGAAAGGGCCCTGAATGCTGGTTTCATACAAGCCACAGATTACGTGAATATCTGGGAAGCGTACCTTGATTACCTGAGGCGGCGCGTCGATTTCAGCAAAGAGTCGAGCAGAGAGCTGGAGGAGCTGCGGGCAGCCTTCACCCGGTCCCTGGACTATATGAAACAGGATGTGGAAGAGAGGTTTAGTGAAAGTGGAGACCCCTCTTGTACTATCATGCAGGTCTGGGCAAAGATAGAGGCCTTGCATTGTAAGAACATGCAGAAGGCCAGAGAACTGTGGGACAGCATCATGACAAAAGGGAACGCCAAATTCGCCAACATGTGGTTGGAGTACTATAACCTGGAGAGGTCGTACGGAGATGCTCTCCACTGCAGGAAAGCCCTCCACAGGGCCGTCCAGTGTACCTCCGACTACCCAGAGCATGTGTGCGAGGTCCTGCTCACCTTTGAGAGGGTTGAGGGTTCTCTGGAGGACTGGGATGCAGCGGTGCAGAAGACTGAGACACGGCTGAACAGAGTCAATGAGCAGAGGGCCAAGgtgacagagaaagaggcCCATGTGACTCGCCAGGTGGAGGAGAAGACTGAACAGCGGCGGAGGGCCAAGGCAGACAAGAAGAACCAGAAGAAGGGCCAGAAAGGCAGCAGGcctggagagaagaggaaggcaGAGGACAAGGATTACGAGGATGAGTGGGGAGAGGAATCGGAGCAACCTCCAAAGAGGCACCGAAGGGAGGGCGACCAAGGCTTCAGGGGGGGATGTGGTGGTGCTGAGGAGTTCATGGGGACAGAGAGTGGGCTGTTTGGGAGGAGAGCCCCCCCTGGCCGCAGACAGGAACCACCTGGTACTAAGAGGGGCCAGCAGGTGGCGCCAGCCACCTTATGGAAGACCCAGGAAGACGACCCCGAGCTACGCAAGGACGACTGCAGTGTGTTTATCAGTAACCTGGCCTTCACCATGGAGGATCCAGAGAAGAGGCTGAAGAAGTTGTTTGAGCCCTGTGGTCCTGTCCAGTCAGTGCGCCCCGTCTATGCTGCCAAGGGCTTCAGAGGGTACTGCTACGTACAGTTTGAGGGCAAGGCGTCTGTGGTCGAGGCCCTGAAGATGGACCGGCAAGAGGTGGAAGGCAGGCCCATGTTCGTATCACCCTGTGTGGATAAAAACAAGAACCCTGATTTTAAGGTGTTTAAGTACAACACAAACCTAGAGAAACACAAGATCTTTATCTCGGGCCTGCCCTTTTCCTGCACCAAGGAGCAGCTAGAGGAGCTATGCAAGGTTCATGGCACCATTAAAGACATCCGCTTGGTCACCAACCGCTCAGGCAAACCCAAGGGTCTGGCGTACGTGGAGTTTGGGGATGAGGCTCAGGCCTCCCAGGCCGTGCTGAAGTTGGATGGCACAGTACTACAGGAACACACACTCTCTGTTGCCATTAGCAACCCGCCTCGCAGAAACACTGCCGACAAGCCTGGCTTCAGCAGACCCGTGGGAGCCATGATGCCCCGGTCTATGGTCTATGGATCGAGGGGAAAAGGGCGCACCCAGCTCTCACTACTCCCTCGTTCACTACATCGGCAGAGAGGATCAGAAAGTAAAGCAGAGAATGGGACTGCACCTAAACCCACAGGGGGCGCATCTGGAGATGCTGGGATTGAAGCACAAGCCAAGCCCTTGTCTAATTCAGACTTTGCCAAAATGCTTTTCAAAAAGTGAAAATAATAAAAACTGCCTTTGTATGGAAAGCCATCTTGTGTCCTTGAGGAGAAGAGATGGCAGATATTGTGCTGTACATTTTTGACTCTCCTTTATTCCATACCAATGGCCCCCATCTTCCTTGTCACTTTCTGTAAGAAAGCCTTAATCTCCCTGGCTCAACTGGCCCCagactccatattactacatccTTGTGAACAAGTGTGAGTGCCTGTTTTAATTACCAATTTCAGTTTGTTTTTAATTGGGAAAGGTGTTTTATAGAAGACGTAtcatatgtgtgtatgtaaatAATACTTATCGTGTGTTCTGTTTTGGGAAGggatataaaaaaaaatccaaaaccaGCTTGTGACTCATGTTTTAAAAGGTATATGCAAGAGCTTGACATTGTGTAAATATGTATTACAACGATGaaagatttttttttgtgtgttaagtTTCCTTTAGGTGTCAACATACCACTCATTGTTTTGTTTGCCCTACATGCAACAATATTTGTTCCCATGCAGTGAATGACTAATATTTCACTTTACAGAATATTACCTAAAACTGCAGTTGTACAAATAATTACTGGCCAGAAATCATTCCTCACCTGTTCTGTGCTCACATTTAGACTAGTTTAAGTCTTTGCCCATAAAAACATAATCCTTTATTATTCCCTTACCGGGACTTCTTTGATGGCACTGTAATGTAAGGttgtctgactcattaaaacccaTCCATGTTTAGGCTGTCTTACCTGAAAGGTTAGAAGagaatacttttttttaatgtattctCATTTATTCCTGAGATTGTTTCCAATTTGCTCATTCCTGTCTAGGGTATTGAATAAGCTATGAGATGGGTAGGGAATGAACTGACAGTTTGGAGAAGCACTAAAGGGCCATCTCATTCTAATCAGTCCTGTCCACAAGTGAATCAACCATTGTTGGGAGAAAGAATCTATGCAGCGGTTTTGATTGCAAGAGCCCTCCATGTCCACATATTGTAGGCAGATTTGATACGTTCAATAAATTACATCGTGGTAATGTAAAGGTTTGAACTAAATTCCTAAATCTCATTTGCCTTTCAAATGAATGTGGTCATTAACAATTCTGTTGACCAGTAATCCTGTTTGGATGAGTGGGGAACATCATGTGTGTTCAGAATTCACACACTCCAAGTGATTGGCCATAGTTTTGTAATACATTATGTTTGAGAATTATTAGCTATATCTAGCGACGTTCTATCACCACAGTGGCCTAATCTAGTTAGAGACTACAAACATTTGAGCTTTCGAAGTTGCTTTCTGTTTGTCCAATGTATGATGTACATTGTGTAGTAATTTTGAAATCATTGTCATGGTGTTCACATTTTTCTATTACGAGAACGCAAATGTAAACTAGAAATAGCTTGTTTTTTAGTTACAAAATTATCAGGGCAACCCTGTGAGATTGAACTTGTTTTACTTTTGTTCAGTGATCCTTTTATTTACCGCTTGTTCCAAGTTTTACACTTGTCATTTGAGTCTTGTAAAAATGTCATCTTGTGGTTTTGTTGCCATTTCTGACCTTAAGTTGTTTATTAAAGCAATTCAAATAGA

Function

GO: NA

KEGG:

id description
K22611 SART3, TIP110; squamous cell carcinoma antigen recognized by T-cells 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564262 lncRNA downstream 3494 31424921 ~ 31425166 (-) True G496652
TU564260 lncRNA downstream 4754 31423689 ~ 31423906 (-) True G496650
TU564245 lncRNA downstream 19545 31400719 ~ 31409115 (-) False G496640
TU564240 lncRNA downstream 19545 31407921 ~ 31409115 (-) True G496640
TU564244 lncRNA downstream 25175 31400719 ~ 31403485 (-) False G496640
TU564399 lncRNA upstream 214110 31659480 ~ 31659947 (-) True G496771
TU564403 lncRNA upstream 222663 31668033 ~ 31668357 (-) True G496775
TU564404 lncRNA upstream 223884 31669254 ~ 31669636 (-) True G496776
TU564417 lncRNA upstream 259294 31704664 ~ 31705045 (-) True G496789
TU564429 lncRNA upstream 313777 31759147 ~ 31759455 (-) True G496801
XM_021606132.2 mRNA downstream 108498 31315214 ~ 31320162 (-) True LOC110525734
XM_021606133.2 mRNA downstream 113597 31310900 ~ 31315063 (-) True LOC110525735
LOC110525732 mRNA downstream 122262 31305607 ~ 31306398 (-) True LOC110525732
XM_036979875.1 mRNA downstream 332770 31058538 ~ 31095890 (-) True LOC110525730
XM_021606123.2 mRNA downstream 428257 30966155 ~ 31000403 (-) False LOC110525727
XM_021606139.2 mRNA upstream 12672 31458042 ~ 31464600 (-) True tmem119a
XM_036979880.1 mRNA upstream 20463 31465833 ~ 31518984 (-) False LOC110525740
XM_021606142.2 mRNA upstream 20463 31465833 ~ 31518987 (-) False LOC110525740
XM_021606140.2 mRNA upstream 20463 31465833 ~ 31539790 (-) True LOC110525740
XM_036979881.1 mRNA upstream 99773 31545143 ~ 31607759 (-) False ssh1a
TU563022 other downstream 853087 30575118 ~ 30575573 (-) True G495560
TU563013 other downstream 879210 30545402 ~ 30549450 (-) True G495554
TU562998 other downstream 901114 30526686 ~ 30527546 (-) True LOC110525714
TU561865 other downstream 1753087 29675323 ~ 29675573 (-) True G494542
TU561743 other downstream 1925269 29502253 ~ 29503391 (-) True LOC110525684
TU564400 other upstream 216023 31661393 ~ 31661618 (-) True G496772
TU564405 other upstream 225608 31670978 ~ 31671927 (-) True G496777
TU564492 other upstream 398093 31843463 ~ 31892649 (-) True G496851
TU565305 other upstream 1234672 32680042 ~ 32682847 (-) True LOC110525784
TU566350 other upstream 1882137 33327507 ~ 33330504 (-) True G498484

Expression Profile