RNA id: TCONS_00032031


Basic Information

Item Value
RNA id TCONS_00032031
length 723
lncRNA type lincRNA
GC content 0.46
exon number 2
gene id XLOC_016247
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 14938586 ~ 14940003 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttgtgaaaagggtgtaattgttaaaaataggtacaaacatcagatataaacaaaaacctaaacaaacacttctatgtacataacgtcataaaaatagttgttttatttacctcgcgctgccgtccttgtactgccgtgaacaggaaattctgggaatggaggacggagagttgaatcgattcgtcttcaacaaaccgatcattgtgacatcaaaacatcgcgagaacaacagacagctccgtgtgcatttgaatccatctcgcgatattgtatcacttcaggtacgcgcctactgattcgttgattcaaacgagttgtgaatcaagaagcctctaaagatccgaatcaaactgcagcagcacgccacgaggttttgctcagacttttgggacgtttggaattgctccgtcttgtcaccatgtaacacatagcagcaagacccatgggatttcatcagccactcaccatcagagtcctcagtggaagctgagaagaggaagccaagcaagagatgccagaaaaaagggggaaggaaatgtgttattttgctgtttgagtataggcaggcgcagtgggtagcacaatcgcctcacagcaagaaggtcgcaggttcgagcctcggctgggtcagttggcatttctgtgtggagtttgcatgttctccccatgttagcgtgggtttcctccgggtgctcccacaagtccaaaaatatgtggtgacat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000156622

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033792 lncRNA downstream 107463 14737043 ~ 14831123 (-) True XLOC_016243
TCONS_00033357 lncRNA downstream 149339 14788783 ~ 14789247 (-) True XLOC_016244
TCONS_00033791 lncRNA downstream 262159 14664649 ~ 14676427 (-) True XLOC_016242
TCONS_00033354 lncRNA downstream 422992 14514166 ~ 14515594 (-) False XLOC_016240
TCONS_00033793 lncRNA upstream 22490 14962493 ~ 14964219 (-) True XLOC_016248
TCONS_00033794 lncRNA upstream 697216 15637219 ~ 15650590 (-) True XLOC_016258
TCONS_00032050 lncRNA upstream 1081654 16021657 ~ 16027339 (-) True XLOC_016259
TCONS_00033795 lncRNA upstream 1275092 16215095 ~ 16218098 (-) False XLOC_016260
TCONS_00033359 lncRNA upstream 1426071 16366074 ~ 16376418 (-) True XLOC_016261
TCONS_00032029 mRNA downstream 140281 14791377 ~ 14798305 (-) False XLOC_016245
TCONS_00032028 mRNA downstream 140291 14790294 ~ 14798295 (-) False XLOC_016245
TCONS_00032030 mRNA downstream 145243 14791951 ~ 14793343 (-) True XLOC_016245
TCONS_00032027 mRNA downstream 281917 14655134 ~ 14656669 (-) True XLOC_016241
TCONS_00032025 mRNA downstream 351362 14445348 ~ 14587224 (-) True XLOC_016238
TCONS_00032032 mRNA upstream 42380 14982383 ~ 14987282 (-) True XLOC_016249
TCONS_00032034 mRNA upstream 58609 14998612 ~ 15033136 (-) False XLOC_016251
TCONS_00032035 mRNA upstream 58609 14998612 ~ 15033163 (-) False XLOC_016251
TCONS_00032036 mRNA upstream 58610 14998613 ~ 15031858 (-) False XLOC_016251
TCONS_00032038 mRNA upstream 95087 15035090 ~ 15041846 (-) False XLOC_016252
TCONS_00031998 other downstream 1683789 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00031991 other downstream 2714047 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031983 other downstream 3275663 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031958 other downstream 4033407 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031915 other downstream 5191155 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00032033 other upstream 54390 14994393 ~ 14994490 (-) True XLOC_016250
TCONS_00032037 other upstream 88643 15028646 ~ 15033121 (-) True XLOC_016251
TCONS_00032040 other upstream 162100 15102103 ~ 15107716 (-) True XLOC_016253
TCONS_00032063 other upstream 1568821 16508824 ~ 16512422 (-) True XLOC_016264
TCONS_00032069 other upstream 1675937 16615940 ~ 16616055 (-) True XLOC_016267

Expression Profile

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