RNA id: TCONS_00032036


Basic Information

Item Value
RNA id TCONS_00032036
length 1783
RNA type mRNA
GC content 0.40
exon number 6
gene id XLOC_016251
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 14998612 ~ 15033163 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gacatttttctgtaaaaactcaaaacacaaaTTCACAGAAAAGGTGtataatttaacattaaattgaaacatttgtttccaaaatattttaatagaaaacatgtcaggctaaataattaaaataaatcattgacttctgctgtcttcattagtttcaaaaacacaggttACTTTACGatttaaaatggtatttttgtatatcttttctgcataaaaacgtaaataaaaaatcttacacataccttaggaacggtatagcagaaaatgttggcggttttaaaaccttgacttttcaaaaccgctgtataccttgaaaacggttatcgtctcatgcctagTCATAGGccatgaaaaacacaaacaaaattatAAACCATTGACACAACACTGCATTTACTCACAGTGTGattattgcgaatgatcacattgcgatattagtgctgaaacgatatattgtgcagtcatAATTGTTGCAGTGAATGACAATTTAATGAGTGTCTTCTGTTAATCATGGTACAAATACacaatattcaaatataaatttttttgtgcaaaaataACAGGAGATATTGTTGTATATGGAAGGAGAAACATGCACTCTCtctgttttgatgcttgaaaatcATTCGTTTTCATCTTTGACCTCAATTTAACTGTGTATATGGGAGCAATAGTATGTGAAATCCAGTCACTCAAAACTTACAGTGTTATTTGATGTTTTGTGTCTAAGAAACTGATGAGAGACACTATGTCCAGTCCTACTGGCACCGTGAAGGCGGAGGGCATTATGGTGCCTGATGTTGGCGGCGCACCACCACAGGGCTGTCCAATGCATCGCAATGTTAATGAAAGTGTTCCTCCTCCAGAATGCCCAATGCATCAGGCATCTAGAGATCACACGAAGAAAGCTCCAGATGTACCTGCACATCAGGACAGGGCTTATGAATTTGTGGAGTGTCCTATGAGAGCTGCCAGTGGGACGAAACCCACACTGTCCGACATCAATCCAGCCAACATGATGCCTCCACCTAACCAGCAGCCTTCAGCTGATCAGCCCTTTCCCCTGTCAGTTGTAAGAGAGGAATCCACCATTCCCCGTGCTGGAGCTGAGCAGAACTGGGTTTATCCCTCAGAGCAGATGTTCTGGAATGCCATGCTGAGGAAAGGATGGCGCTGGAACAAAGATGACATAAACCAGAACGATATGGGGGACATCATCAAGATTCACAATCAGAATAATGAACAAGCCTGGCAAGAAATCCTGAGATGGGAGAAACTCCATTCAAAAGAATGTCCATGTGGACCTTCACTCTTAAGGTTTGGTGGTAAAGCAAAAGACTTCTCACCCAGAGCCAGATTTCGCTATTGGATGGGGCACGAGCTGCCATTTGATCGGCACGACTGGATTGTTGACCGTTGTGGAAAAGAGGTCAGATATGTGATCGACTACTATGATGGAGGCCTGGTGTCCAAACACACCATCCTCGATGTGCGTCCAGCCTTCGACTCTTTAGGAGCCGTTTGGGACCGTATGAAAGTGACCTGGTGGCGTTGGACCTCAACATAAACTTACTGGACATGAACTGTTGGATAAACAGGAACTATTATTTATAACCAAGTCTgtggaaggtttttttttttttgcatttggagTCAGAATGGCTTACTTATATTCCTGTGATGGATCCATTAGGTGAAAATTTTGAAACTATTTAATAAGAATGTGGCACTATGTGCTATTGCAAACTGCATCATGTAATAAACAGGAAATGCTGTTAATCTT

Function

GO:

id name namespace
GO:0018063 cytochrome c-heme linkage biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0004408 holocytochrome-c synthase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-202 Predicted to enable holocytochrome-c synthase activity. Predicted to be involved in cytochrome c-heme linkage. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in linear skin defects with multiple congenital anomalies 1 and microphthalmia. Orthologous to human HCCS (holocytochrome c synthase).

Ensembl:

ensembl_id ENSDART00000191478

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033793 lncRNA downstream 34394 14962493 ~ 14964219 (-) True XLOC_016248
TCONS_00033358 lncRNA downstream 48987 14933798 ~ 14949626 (-) True XLOC_016246
TCONS_00032031 lncRNA downstream 58610 14938586 ~ 14940003 (-) True XLOC_016247
TCONS_00033792 lncRNA downstream 167490 14737043 ~ 14831123 (-) True XLOC_016243
TCONS_00033794 lncRNA upstream 605361 15637219 ~ 15650590 (-) True XLOC_016258
TCONS_00032050 lncRNA upstream 989799 16021657 ~ 16027339 (-) True XLOC_016259
TCONS_00033795 lncRNA upstream 1183237 16215095 ~ 16218098 (-) False XLOC_016260
TCONS_00033359 lncRNA upstream 1334216 16366074 ~ 16376418 (-) True XLOC_016261
TCONS_00032058 lncRNA upstream 1356111 16387969 ~ 16393313 (-) True XLOC_016262
TCONS_00032032 mRNA downstream 11331 14982383 ~ 14987282 (-) True XLOC_016249
TCONS_00032029 mRNA downstream 200308 14791377 ~ 14798305 (-) False XLOC_016245
TCONS_00032028 mRNA downstream 200318 14790294 ~ 14798295 (-) False XLOC_016245
TCONS_00032030 mRNA downstream 205270 14791951 ~ 14793343 (-) True XLOC_016245
TCONS_00032027 mRNA downstream 341944 14655134 ~ 14656669 (-) True XLOC_016241
TCONS_00032038 mRNA upstream 3232 15035090 ~ 15041846 (-) False XLOC_016252
TCONS_00032039 mRNA upstream 3235 15035093 ~ 15040345 (-) True XLOC_016252
TCONS_00032041 mRNA upstream 77670 15109528 ~ 15125512 (-) True XLOC_016254
TCONS_00032042 mRNA upstream 268230 15300088 ~ 15324837 (-) False XLOC_016255
TCONS_00032043 mRNA upstream 272344 15304202 ~ 15318786 (-) True XLOC_016255
TCONS_00032033 other downstream 4123 14994393 ~ 14994490 (-) True XLOC_016250
TCONS_00031998 other downstream 1743816 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00031991 other downstream 2774074 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031983 other downstream 3335690 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031958 other downstream 4093434 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00032040 other upstream 70245 15102103 ~ 15107716 (-) True XLOC_016253
TCONS_00032063 other upstream 1476966 16508824 ~ 16512422 (-) True XLOC_016264
TCONS_00032069 other upstream 1584082 16615940 ~ 16616055 (-) True XLOC_016267
TCONS_00032073 other upstream 1912414 16944272 ~ 16944391 (-) True XLOC_016269
TCONS_00032082 other upstream 2307560 17339418 ~ 17392808 (-) False XLOC_016272

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_05397192_05402109.mRNA True 1497 mRNA 0.46 9 CI01000004 5397095 ~ 5402109 (+)