RNA id: TCONS_00032075


Basic Information

Item Value
RNA id TCONS_00032075
length 2455
RNA type mRNA
GC content 0.47
exon number 13
gene id XLOC_016270
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 17096161 ~ 17115256 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAGCATCGCATTAATGGAACAGCTGGTCCTGTGTGACTCGCTGTTTAAACAGCGCAGGAGAAAGGGAAGATGCTGGGGCAGATGGAGCCAGCCGAGCTTCAGTGCACAGTGGCGGTGGAGCGTTTGAATCCTGCAGGTCAGGCCATCAAACGGCAGCTCATCCGCAAAGGCACCGTCACATTAGGGCGTAATGAGTTTCAGGAGATGATTCTGCGCGTCCACGACGGCAAAGCTCCTCAAAACTTCATGCTGCGCGACTTCCAGCTCTTTACGCGCTTCGCAAAGGATGGCAAATGCACTGTTAAATTCATCCCGGAGAACACGCAGGTCCTGGTCTCCGATTGTCCGCCGGACCGTTTGAAGATGTTCCTGAAGACGCTCAGCATCAAGCATCAGGCGTCCCAAAGCAGCAAGCCTTTGAGTGACCGGGAGAAACTGCGAGCTGGTCTTCCTAGAGCCTTTGAGACGGTCAGTCCTCTCCAGCTGAAAGATGTAGAGAAGGCAAACGAGCTGAGGAGCAGGGTGAACGCCCCAATGCAGCCCAGATGTCTGGCAGAGAGACCTGCCAATAAAGTTCTGGGTGACCGCAAACAAGTGAAAAGGCCTAGACCTGATTGTGATGCTAGCCCGGTTAAAGCACTTCACCCCAATAAGAAGCCTGTCTTGGTTTTGCCTGTTGCACAAAAGCTCAGCAAAGAACAAACTGCAGTTCTCAATGCCGTCTTGAGTGgcaaaaatgtgtttttcacGGGCAGTGCAGGTACAGGGAAGTCATTCTTGCTTAAAAGGATTGTTGGCTCTCTGCCTCCAAAAAGCACATATGCAACAGCGAGCACTGGTGTCGCAGCTTGTCACATAGGAGGGACAACATTGCACAGTTTTGCAGGTATTGGGTCGGGTTCTGCACCTCTTGAACAGTGTATTGAGCTCGCTCAGCGCCCCGGGGTACTGCGACACTGGACATCCTGCAAACACCTCATTATTGATGAGATCTCAATGGTTGAGGCTGAGTTCTTTGACAAACTAGAAGCCATagccagGTCCATCAGAAGATCCACAGAGCCATTTGGAGGCATTCAACTGATAGTGTGTGGAGACTTTCTTCAACTTCCACCTGTAACAAAAGGAAAGGAGAAAGCTAACTTCTGTTTCCAGTCGCGAAGTTGGCGGAAGTGTATCCACATGAACATGGAGCTGATGGAAGTGCGCAGACAAACAGACAAGACCTTCATTTCTCTCCTCCAGGCTGTGAGAGTGGGCAGAGTAACAGAGGAAGTTACAGCACAGCTACTGAAAAGTGCCAATCACTGCATTGAGAGGGATGGTATCTTAGCAACCAGGCTTTGCACACACAAGGATGATGTGGAGCTCACTAACGAGAATAAACTCAAACAGTTACCAGGGGTCGTGCGGATGTATGAGGCTGTGGATAGTGACCCGATGCTGGTTCAGACAATTGATGCTCAGAGTCCAGTGAGTCGACTGCTACAGCTAAAAGTGGGAGCTCAGGTCATGCTTACTAAAAACCTTGACGTCCAGAGGGGTCTGGTAAACGGAGCCAGAGGAGTAGTGGTTGACTTTCAGCCAGGAAATCAAGGACTCCCCCGAGTGCGGTTTCTCTGTGGGGCAGTTGAGGTAATGAAGAGAGAGCGCTGGATGTTTAAAGCCCCAGGAGGGCTGTACCTGAGCCGACAGCAGCTGCCACTCAAACTAGCCTGGGCCATTTCAATTCACAAGAGTCAGGGCATGACTCTGGATTGTGTGGAGATCTCTTTGGCGCGTGTGTTTGAGAGTGGCCAGGCTTATGTTGCTCTGTCACGGGCTCGCAGTCTGGAAGGTCTGCGTGTGATGGACTTTGACCCTCGAGTGGTTCAGGCCAACCAAGATGTGCTGATTTTCTATAAGAGACTAAGGAAAGAAAGGCTCCTCATGCAGTCATCAATGAATGATTTTGTTGGACAGAGCAATAAGGAGAACTCCCGCTGGTGACGACGTGATGTGAAGCCTTTATTTTCATATGCACTGTGTGCATGGATGCATCAGGAACTTTAAGTCTTTTTTAATTCAGTTATTGTTTTTTCTTatcttattattatgattttattaaatggatggttcacccaaaaacatttactctaagtggtttcaaacctttttgagtttctgttTTCTGCTGAACATGTTGCTTTTTAAATCGTTacaaacctgtaacctttgactttcatagtaggaaaaacaattcAAAATTCAATCAGAcctttttaaaacccttttttgCATTAAACAGAATGAGAAAACCCAAACCGGtttatgaatgagtaaatgacaaCTTTCTGTTTTGGGTGAATTGTCCTATGAGcaaacctatttatttattttttttaattattgcctGAACcatgtttttgtgttttggacgatgttttaataaaatattttagttttatacaTAAA

Function

GO:

id name namespace
GO:0000002 mitochondrial genome maintenance biological_process
GO:0006310 DNA recombination biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0000723 telomere maintenance biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006260 DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005657 replication fork cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0043139 5'-3' DNA helicase activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03032 DNA replication proteins
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-030131-4928 Predicted to enable several functions, including 5'-3' DNA helicase activity; ATP binding activity; and DNA binding activity. Predicted to be involved in DNA duplex unwinding and DNA replication. Predicted to act upstream of or within DNA recombination; DNA repair; and telomere maintenance. Predicted to be located in mitochondrion and nucleus. Predicted to be active in replication fork. Is expressed in ectoderm; head; optic tectum; pectoral fin musculature; and proliferative region. Orthologous to human PIF1 (PIF1 5'-to-3' DNA helicase).

Ensembl:

ensembl_id ENSDART00000006549

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032072 lncRNA downstream 155717 16933799 ~ 16941133 (-) True XLOC_016268
TCONS_00032068 lncRNA downstream 542374 16548872 ~ 16554476 (-) True XLOC_016266
TCONS_00032065 lncRNA downstream 577470 16517034 ~ 16519380 (-) True XLOC_016265
TCONS_00032064 lncRNA downstream 577559 16512861 ~ 16519291 (-) False XLOC_016265
TCONS_00033796 lncRNA downstream 590430 16505641 ~ 16506420 (-) True XLOC_016263
TCONS_00032093 lncRNA upstream 677316 17792168 ~ 17947144 (-) True XLOC_016274
TCONS_00032096 lncRNA upstream 1712429 18827281 ~ 18830794 (-) True XLOC_016275
TCONS_00033797 lncRNA upstream 1985570 19100422 ~ 19105442 (-) False XLOC_016276
TCONS_00033798 lncRNA upstream 2037520 19152372 ~ 19181553 (-) False XLOC_016278
TCONS_00033799 lncRNA upstream 2037520 19152372 ~ 19181569 (-) False XLOC_016278
TCONS_00032070 mRNA downstream 51891 16885285 ~ 17044959 (-) False XLOC_016268
TCONS_00032071 mRNA downstream 109956 16910557 ~ 16986894 (-) False XLOC_016268
TCONS_00032066 mRNA downstream 531160 16547706 ~ 16565690 (-) False XLOC_016266
TCONS_00032067 mRNA downstream 534345 16548356 ~ 16562505 (-) False XLOC_016266
TCONS_00032057 mRNA downstream 647346 16384285 ~ 16449504 (-) False XLOC_016262
TCONS_00032077 mRNA upstream 85468 17200320 ~ 17235891 (-) True XLOC_016271
TCONS_00032078 mRNA upstream 151907 17266759 ~ 17392895 (-) False XLOC_016272
TCONS_00032079 mRNA upstream 152808 17267660 ~ 17393216 (-) False XLOC_016272
TCONS_00032080 mRNA upstream 152808 17267660 ~ 17393971 (-) False XLOC_016272
TCONS_00032081 mRNA upstream 202911 17317763 ~ 17392799 (-) False XLOC_016272
TCONS_00032073 other downstream 152459 16944272 ~ 16944391 (-) True XLOC_016269
TCONS_00032069 other downstream 480795 16615940 ~ 16616055 (-) True XLOC_016267
TCONS_00032063 other downstream 584428 16508824 ~ 16512422 (-) True XLOC_016264
TCONS_00032040 other downstream 1989134 15102103 ~ 15107716 (-) True XLOC_016253
TCONS_00032037 other downstream 2063729 15028646 ~ 15033121 (-) True XLOC_016251
TCONS_00032082 other upstream 224566 17339418 ~ 17392808 (-) False XLOC_016272
TCONS_00032083 other upstream 238979 17353831 ~ 17392719 (-) True XLOC_016272
TCONS_00032102 other upstream 2102886 19217738 ~ 19222433 (-) False XLOC_016279
TCONS_00032107 other upstream 2247946 19362798 ~ 19363161 (-) True XLOC_016282
TCONS_00032108 other upstream 2391459 19506311 ~ 19513296 (-) False XLOC_016284

Expression Profile

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