RNA id: NM_001124249.2


Basic Information

Item Value
RNA id NM_001124249.2
length 2626
RNA type mRNA
GC content 0.47
exon number 10
gene id gk
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39906570 ~ 39911822 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTACAGTTCACTGcctctgcatacacacacactcatgccaAACACACACTTACCACACACCTAGATACACACGCAAGTGATTTAGAGAGCTAGACAAGATACTGTGCGTCAGCTCCTTCATGGGCCAGATGGGGAAGATGCCTTGTAGCCTCAGCTCTGTGCTAGAGACAGTCATCATGGTGGAGCAGATCCTGTCGGAGTTCAGGCTGAAGAAGGAGCAGTTGAAGGAGGTGatgaagaggatgatgagggagatGGACCGGGGACTGCGTGTAGAGACGCACCAGGAGGCCAGTGTCAAAATGCTGCCCACCTACGTCTGTTCTACCCCTGAAGGATCAGAGGTGGGTGATTTCCTGGCCCTGGACCTGGGGGGGACTAACTTCCGTGTGATGTTGGTGAAGgtgggggaggatgaggagaggggatggaaggTGGAGACCAAACACCAGATGTACTCCATCTCTGAGGACGCCATGACAGGCACGGCTGAGATGCTCTTTGACTACATTGCTGAGTGTATATCAGACTTCctgaacagacaacacatcaAGCACAAGAAGCTTCCTCTGGGTTTCACCTTCTCTTTTCCTGTACGACACGAGAACATAGACAAGGGCATCCTACTGAACTGGACCAAAGGGTTCAAGGCGTCTGGAGCAGAGGGTAACAACGTGGTGGGACTACTGAGAGATGCCATcaagaggagagggGACTTTGAGATGGACGTCGTTGCCATGGTGAACGATACAGTTGCCACCATGATATCCTGTTACTATGAGGACCGCAGCTGCGAAGTGGGAATGATTGTGGGTACTGGGTGTAACGCTTGCTACATGGAGGAGATGCGGACAGTGGAGCTggtggagggggaagaggggaggatgtGTGTGAACACAGAGTGGGGGGCCTTTGGAGCCAACGGAGAGCTGGAGGAGTTTAGACTGGAGTACGACAGGGTGGTGGACGAGACATCACTCAACCCTGGACAACAACTCTATGAAAAGCTGATCAGTGGGAAGTACATGGGAGAGCTGGTGCGGCTGGTATTGTTGAAGCTGGTGAACGAGGAGCTGCTGTTTAACGGAGAAGCCTCTGACCTGCTGAAGACTCGCGGCAGCTTTGAGACGCGCTACGTCTCCCAGATAGAGGGtgACTCTGGAGACAGGAAGCAGATCTACAACATCCTGTCTACGCTGGGCGTGTTGCCGTCGGAGCTGGACTGTGACATAGTGCGTCTAGCTTGTGAGAGCGTGTCCACGCGGGCAGCACACATGTGTGGGGCGGGGTTAGCCGGCGTCATCAACCGTATGAGAGAACGCCGCAGCCTGGCGGTGTTGAAGATCACTGTGGGCATCGACGGCTCCGTCTACAAACTCCACCcctgTTTCCAGGACAGGTTCCACAAAGTTGTGCGGGAGCTGACGCCTCACTGTGACATCACCTTCATCCAATCAGAGGAAGGGAGTGGCCGGGGGGCGGCACTTATCTCGGCAGTAGCCTGTAAGATGGCAGCGTGCATGCTGACACCCTGAGAGTCGTAACAGCCTCCCACCTATAGGGGGCGATGCAGGTGAACCAGGCTTAACTCTGACCTCATACAGTAAATTATACCTCATCTAGGGTGATCCAGCTCTGGCCTCCTCTTGAAGCTTTCACAGAGTAATCTGTAACTCCTCATTGGTGAGAGAAGCAATACGAGTGTGGATAACTCACTGTACATACAAATAACCccaccacacagcacacacaacATGGGATACACAGAGACAGATTCAATCATCACTTTTcccagtgtacagtattatacagatgTGTTTTTGAACTGATGAGCCTCTGAAAATTCCCTGCAGTCCCACAATGCATAagtggtgagtcccagaaagtAACGAACCCTTGTTTCAACATGTTCTCAAGCTTCCACTGATTGCAGGTATTTAAAGCTTGAttaataatgtaatataatgttaAAGGGAAAAAGATTGGCATTGATTTATAGCATCAGTATGTTTTTTAGTTGGATGCTGTCTGTTTAATCCAGAGATGTTACCGTATATAAATTTAAAACTAAGGGATTATCCCTTTCAAATGTGTTGCAGTGCAGTCTTTCACTTACTGTTCGTGGGAAATTAAATATTTATTTGATAGCATATTGATAAAAGTGATGTATCTGTGATGAGCGTAAAGGTCTTAATTCCTATGATGTATATCTAAGAATGATAATGTGCTTTGTAATGTGACCATTTTTTATTGTTGTAAGTAAAGTTGCTGTAACATACAAATATTTTTGTTGTGTGCCTATCGTCATTTGAAATTGAAGGGGCCAAATAACTGAAGTGGCTTTAGCGTACATGACCACATCCTGTCACAAAGAACTGTCAGGTTTCTGTTTCTGTTCAGTAAAGTGAGCAACTCACACAAAGTTTCCCAGGCAAACACCCAATGCAACTGAATAGGACTGTAAACTACAGTCAttctcagtggtgtaaagtacttcagtaaaaatgcttgaaagtactacttaagtcgttttttagGGTATCGGTACTTTACTttacttatatatatttttgacaacttttacttttacttcactacattcctaataaaaatgatgtactttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU575359 lncRNA downstream 717 39905549 ~ 39905853 (-) True G506795
TU575198 lncRNA downstream 289279 39616938 ~ 39617291 (-) True G506639
TU574184 lncRNA downstream 298773 39607572 ~ 39607797 (-) True G505752
TU574180 lncRNA downstream 302179 39604097 ~ 39604391 (-) True G505748
TU574175 lncRNA downstream 306383 39599927 ~ 39600187 (-) True G505743
TU575369 lncRNA upstream 20698 39932520 ~ 39932855 (-) True G506802
TU575372 lncRNA upstream 35679 39947501 ~ 39947725 (-) True G506805
TU575373 lncRNA upstream 39877 39951699 ~ 39951922 (-) True G506806
TU575435 lncRNA upstream 136807 40048629 ~ 40048833 (-) True G506865
TU575436 lncRNA upstream 137481 40049303 ~ 40049566 (-) True G506866
XM_021606461.2 mRNA downstream 1163 39901532 ~ 39905407 (-) True LOC110525935
XM_021606454.2 mRNA downstream 28619 39826260 ~ 39877951 (-) False LOC110525932
XM_021604986.2 mRNA downstream 87143 39808201 ~ 39819427 (-) True LOC110525027
XM_021606453.2 mRNA downstream 101229 39790133 ~ 39805341 (-) True LOC110525931
XM_021606450.2 mRNA downstream 128032 39751726 ~ 39778538 (-) False LOC110525929
XM_021606462.2 mRNA upstream 23506 39935328 ~ 39946578 (-) True npc1l1
XM_036980095.1 mRNA upstream 47039 39958861 ~ 39983075 (-) True LOC110525938
XM_036980098.1 mRNA upstream 109897 40021719 ~ 40033534 (-) False LOC110525939
XM_021606465.2 mRNA upstream 109897 40021719 ~ 40033727 (-) False LOC110525939
XM_036980097.1 mRNA upstream 109897 40021719 ~ 40033727 (-) True LOC110525939
TU575349 other downstream 16639 39887022 ~ 39889931 (-) True G506785
TU575314 other downstream 68410 39837648 ~ 39838160 (-) True LOC110525932
TU575254 other downstream 141794 39763291 ~ 39764776 (-) True LOC110525929
TU575200 other downstream 282226 39623685 ~ 39624344 (-) True G506641
TU573926 other downstream 483080 39421668 ~ 39423490 (-) True aopep
TU575676 other upstream 628837 40540659 ~ 40542329 (-) True G507063
TU576563 other upstream 1509202 41421024 ~ 41461922 (-) True G507906
TU576567 other upstream 1523153 41434975 ~ 41439014 (-) True znf131
TU577033 other upstream 1909033 41820855 ~ 41821210 (-) True G508303
TU577652 other upstream 2232275 42144097 ~ 42144885 (-) True G508891

Expression Profile