RNA id: TCONS_00032080


Basic Information

Item Value
RNA id TCONS_00032080
length 1446
RNA type mRNA
GC content 0.44
exon number 11
gene id XLOC_016272
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 17266759 ~ 17393971 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATACATAGGCTGGTCTCAAAATACATAGGCTATATGGCTGGTCTTTctagttaaaaaaaatgtctaaaacatGTGTAGAGCTGCTTTAACTAAACTAAAACGCTGCTCATTTGCATATATAAAAGACAAACCGAGCTCATCATTAGCACACAATTGCAAAGATATAATGCAATAGCTGACGAGGAGAGACTGCCACGTGGGGAACAGAAAGACGAACCGCCGATGAAAAGATGCATTCACGGCAATGAAACTGCCAGATAACAGTATATATATTCTAAGCACTCATGTGACAAACTCTGTACCAAATATTTGCTGAAGGCACAACAAAAATGAGGTGATGTAAAAACACGGTACCATGTGAATGGTTGAGGAACATGAAGCCTGCACACAAACTACTGTTCGTCGTGTGTCCCATGCTGGTCTTGGGGTTCATCTACTACTCTTCTGGGAAGCTCCATTTGCACGTATGGGGCCAAAAGCCACTGTTTGATAAGCAAGGGTTCATGCTGAATCTGGACACAAAGCTGCCTCTGGATCTGGCGTACAAGTATGGAAACCTCAGTGAAGGAGCCTGCAAACCTGGCTATGCAGCTGCCAAAATGACTGCTATCTATCCAAAGTTTAGTAAGCCAGCTTCTATGTTTCTGGACCGAAACTTTAAGAGGCTTGCAAAAGTGATCAACTATTTACCTCCATTTGGATTCAGAACACAAGAAAGAATCATAGATGTTATATTATCCGCTACAAAGAATTATGGACTGGGTCCAGAACTGGATAGTTTGATTTGTAAAAGATGTATCATAGTGGGCAATGGCGGTATCCTTAGCAACAAGTCTTTAGGATCCCGcattgatgaatatgatgttgtGGTAAGACTCAATGAAGCCCCAGTGAGCGGTTACACCAGAGACGTAGGTAGTAAGACCACCATGAGGATTACCTACCCTGAGGGGGCCATCCAGAAGCCTGAGCGCTACGAGAAAGATTCGCTCTTTGTCTTCTCTGCTTTCAAACCTCTCGACTTTAAATGGCTGAGACAGATGGTCTACAAAGAGAAACTGCAAGGAACAGAGGGCTTCTGGAAGTCTGTAGCACGATATGTTCCCCGGGAACCCTCAGAAATACGGATTCTCAACCCCTACTTTATACAAGAGGCTGCCTTTCAGTTTATTGGCCTTCCACAGAACAATGGCCTCATGGGTAAAGGGAACATTCCAACGTTGGGCACCGTTGCCATTACGATGGCCCTACATAACTGCGATGAGGTCGCTGTTGCTGGATTTGGCTATGACATGAACACCCCTCATGCACCCTTGCACTACTACGAATCAGTCAAAATGTCTGCCATTAAAGAGTCATGGACTCACAACATCTCAAAGGAAAAGGAATTTCTCCGAAAGTTGGTGAAGGCCAACATCATTACAGACTTAACCAATGGGATTTGA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008118 N-acetyllactosaminide alpha-2,3-sialyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0008373 sialyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050411-13 Predicted to enable N-acetyllactosaminide alpha-2,3-sialyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; corpuscles of Stannius; hypochord; pleuroperitoneal region; and ventral mesoderm. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability and developmental and epileptic encephalopathy 15. Orthologous to human ST3GAL3 (ST3 beta-galactoside alpha-2,3-sialyltransferase 3).

Ensembl:

ensembl_id ENSDART00000100201

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032076 lncRNA downstream 152824 17113329 ~ 17114836 (-) True XLOC_016270
TCONS_00032072 lncRNA downstream 326527 16933799 ~ 16941133 (-) True XLOC_016268
TCONS_00032068 lncRNA downstream 713184 16548872 ~ 16554476 (-) True XLOC_016266
TCONS_00032065 lncRNA downstream 748280 16517034 ~ 16519380 (-) True XLOC_016265
TCONS_00032064 lncRNA downstream 748369 16512861 ~ 16519291 (-) False XLOC_016265
TCONS_00032093 lncRNA upstream 398197 17792168 ~ 17947144 (-) True XLOC_016274
TCONS_00032096 lncRNA upstream 1433310 18827281 ~ 18830794 (-) True XLOC_016275
TCONS_00033797 lncRNA upstream 1706451 19100422 ~ 19105442 (-) False XLOC_016276
TCONS_00033798 lncRNA upstream 1758401 19152372 ~ 19181553 (-) False XLOC_016278
TCONS_00033799 lncRNA upstream 1758401 19152372 ~ 19181569 (-) False XLOC_016278
TCONS_00032077 mRNA downstream 31769 17200320 ~ 17235891 (-) True XLOC_016271
TCONS_00032074 mRNA downstream 152404 17096161 ~ 17115256 (-) False XLOC_016270
TCONS_00032075 mRNA downstream 152808 17096850 ~ 17114852 (-) False XLOC_016270
TCONS_00032070 mRNA downstream 222701 16885285 ~ 17044959 (-) False XLOC_016268
TCONS_00032084 mRNA upstream 56257 17450228 ~ 17492080 (-) False XLOC_016273
TCONS_00032085 mRNA upstream 57323 17451294 ~ 17492486 (-) True XLOC_016273
TCONS_00032086 mRNA upstream 184349 17578320 ~ 17827983 (-) False XLOC_016274
TCONS_00032090 mRNA upstream 184349 17578320 ~ 17947389 (-) False XLOC_016274
TCONS_00032089 mRNA upstream 184349 17578320 ~ 17947389 (-) False XLOC_016274
TCONS_00032073 other downstream 323269 16944272 ~ 16944391 (-) True XLOC_016269
TCONS_00032069 other downstream 651605 16615940 ~ 16616055 (-) True XLOC_016267
TCONS_00032063 other downstream 755238 16508824 ~ 16512422 (-) True XLOC_016264
TCONS_00032040 other downstream 2159944 15102103 ~ 15107716 (-) True XLOC_016253
TCONS_00032037 other downstream 2234539 15028646 ~ 15033121 (-) True XLOC_016251
TCONS_00032102 other upstream 1823767 19217738 ~ 19222433 (-) False XLOC_016279
TCONS_00032107 other upstream 1968827 19362798 ~ 19363161 (-) True XLOC_016282
TCONS_00032108 other upstream 2112340 19506311 ~ 19513296 (-) False XLOC_016284
TCONS_00032109 other upstream 2114129 19508100 ~ 19512644 (-) True XLOC_016284
TCONS_00032112 other upstream 2129615 19523586 ~ 19523683 (-) True XLOC_016286

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00004939 True 280 mRNA 0.51 2 CM030140.1 10818400 ~ 10822872 (+)