RNA id: TCONS_00032084


Basic Information

Item Value
RNA id TCONS_00032084
length 4339
RNA type mRNA
GC content 0.47
exon number 22
gene id XLOC_016273
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 17450228 ~ 17492486 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCGCAGAGCTTGAGTGCTGATGGAGGTTTGTCAGAAGAAGCATCTGCTGTTAGCCAAACATCTATACGAAGGTTAAGGGAAGTTATTAGGGTTTTGTTTGACAAAGTCAGTGTTAAGGACTCGGTCAGCCAAGATGGCATCTGACATGCCAGTTTCCAGGGGTATAATGACCTTTCACCCCACCGTTGAAGAGTTCAAGAACTTCAGCCGCTACATTGCGTACATGGAGTCACAAGGTGCACACAAAGCAGGCCTAGCCAAGATCGTCCCACCGAAAAACTGGAAGCCTCGAGGTTCTTATGATGACATTGATGACCTGATCATACCTGCACCGATTCAGCAGGTTGTGACTGGGCAGTCGGGGCTGTTCACTCAGTACAACATCCAGAAAAAAGCCATGACTGTGAAAGAGTTCCGCAAAACCGCCAACAGCGACAAGTTTTGCAGTCCTCGATATGATGATTTTGAAGAACTCGAaaggaaatattggaaaaatgtaaccTTTAATCCTCCCATCTATGGAGCTGATGTGAATGGGACACTTTATGACCCGGATATCAAAGAATGGAACGTAGGGCACTTGAATACTATCCTAGACACAGTGGAGCATGAAAGTGGAATCACTATCGAGGGAGTGAACACACCCTACCTCTACTTTGGCATGTGGAAAACCACTTTTGCCTGGCACACAGAGGACATGGATCTCTACAGCATCAATTACTTACACTTCGGGGAACCAAAGTCTTGGTACACCGTGCCTCCTGAACATGGAAAAAGACTGGAGCGGTTAGCTAAAGGCTTTTTCCCTGGAAGTTCACAAAACTGTGAAGCCTTTCTCAGACACAAGATGACTCTTATTTCACCTTCCATTTTAAAGAAGTATGGCattccttttgaaaagATCACTCAGGAAGCTGGAGAATTTATGGTGACGTTTCCGTATGGCTATCATGCAGGCTTTAACCATGGTTTCAACTGTGCTGAGTCTACAAATTTTGCCACGAGGCGATGGATTGACTATGGAAAACAAGCCATACTGtgTTCTTGCAGGAAAGACATGGTGAAAATCTCCATGGATGTGTTTGTGAAGAAATTTCAGCCTGAACGGTACGAGCTGTGGTTGGAGGGGAAGGACAACGCACCCATTGATCACTCTAAACCCACGCCTGAAGCAGCTGAGTTTTTAGGTGGAGAGGCTGGTGCTCAAGAACTCCGCATTGAGAACCAAAGTAATGAGGGACAAAAAAAGAGCCTGGCCAAACAAAGGATAGGAACCAAAAGACACAGGGTGTGTCTGGACTTTCCAGAGGAAGTTCTTCCAAAGACTGAAACAAATGATGAGGCTGAATATGGCAAGAAGGGCCGATTGACTCCATACACAGAACAGTGCAAGGAGTATACAGAGTTGAAGCATGAAGACCGCACACTTCCACTGATGGGTTCAACCAGTTTAAAGATGCTGCCAGGATCCAGAAGTGCTGAATTTTCGGAAAACGTTCGGGGTGCTGGTTTTAGTGACGCAGACCTGGATGCTAAAGCAACTAGCCATATTTCAGCCTGTGCGCAGCCCTTCCCAAAGCATCACCTCTCTATCGCATCTGTCCCTACTGTCCCACACTGCTTGTCAGCTGTGCCACGGGTATCCACCAAACCAGGGGTGGCAAGCCTTCTCTTTCATCGCACCCTCAGCCCGACAGATGCCCTGCAGGTCCACAGCTACGCAGCCAAAGCTGCACTCTGTAAACCACAAACACCCAGTCCAGAGAAACCCAGAGAAGACCTACACATACCAGACATCAGTCTAGACGTGAGGCCAAATACACCAACTCCACCCCCAGACACACCAGAGCACGAAATTGAAGGTGAGAAGGAGAATAACAGCATGAAGAGGAAACTGCAGCCGCTCAGCAAGTTGCCGCGTTTGCATCCTCTGCTCCGAGAGAACTCCAGTGATGACGAGATCCAGGAGCCAACAGCTGAGCCAGAGGAGACCGATCCCTGGGCTAAAATCCTGGCTCCCATGTGGCAGAGCAGACAACGCAACTTTCAGATCGAGAAGGAGTTCAACTTCCGCATGGGCCTGCATCCACCGTACTGTGCAGTGTGTTCCCTCTTTCACACCTACAATGAGAGTGATGTAATCAGCCTGGGCGGTTTTGCAGCTgtaggaggaaacccacaaaggACCAAACCTCTGATTCCAGAGATGTGCTTCACCAGCAGCTCTGAAGGACATCTGTCCACTCCTAACCTGGAGGCGGACGGCACTAGCCAACTCATCAGCTGCTCTGTGTGCAGTGTGCGCGTACATACAAGTTGTTATGGTGTGTCTCAGGATGCTAAGTTAGACAGCTGGAGATGTTCCCGCTGTGAAGCTAACGCCATTACTCAgGACTGCTGTTTATGCTCTCTGAGAGGAGGAGCACTGCAGAGAGCCAACAATGACAAGTGGGTTCATGTGTTGTGTGCTGTAGCAGTGCTGGAGGCTCGCTTCGTCAACATTGCAGAGCGCAGACCGGTTGATCTCAGCACTATCCCGTTTCAGAGATTTAAACTGaaatgtcAATTCTGCCGAAAGTGGGTTAAGAAGACCACAGGCTGCTGTGTGCAATGTTCGCACGGCCGCTGCTCCACTTCCTTTCACGCCACATGTGCACAGGCAGCTGGAGTTCAGATGCATCCTGATGATTGGCCGTTTGTTGTCTACTTCACTTGCTGGAGGCACAAGGGCGGCACCCACATAGAGCGCAATATGGCATCCATGCGGGAGTTGGAGAAAGGACAAAAAGTGATCTGCAAGCACAAAAATGGCCGGTACTATCACTGTGAAGTGGTTGAGCTGACTAAGGCCACCTTTTATGAGGTTATATTTGATGATGGCTCATTTAGTGACAACCTCTTCCCTGAGGATATAGTGaatagaGACTGTACGCGGCATGGTCCACCATCAGAGGGCGAAGTGGTTCAAGTACAATGGACAGATGGCCTCATCTATGGAGCCAAATTTGTATCTGACCACATCATCCCCATGTACCAGGTTGAATTTGAAGATGACTCTCAGCTTACTGTGAAGAGGGAAGATGTGTTCAGTTTGGACGAGGAGCTGCCCAAACGTGTTAAATCCCGACtgtctgTGGCATCAGACATGCGCTTCAAAGGAGTGTTTGTGGAGAAGGAAGTGAAGCAGGACTCAAAAAGACAGCGAGTGATCAACTCCCGTTACAGAGAAGACTACATTGAACCGGCCATCTACAGAGCAATCTTGGAGTAACTCAATCCACAAACaatatctttaaaacaaaaaccaaTTCACCAATAACACGGCAAACAGAGAAACAGGCTGGAGCAGACACATCGTCACATGATCGGACAACGGCAAATACAATTCTACCGCTGcgccttttgtttttaaaaccatcAAGATCAACTTTTTAGGCCGAGTATGAATTCGGACAGCACAGATGAGAGTCTCAGAGATGAAATGCTAGGAATGTCTTGTGTAAGAGTGTTTGTTTGTTCGCACAGCACACAAGCGGTTCGGGATCAGCGGGTGGCGGTGGACGGCTCTCGGACTCCTACTATCTTTAGTCAGGTGGCAGTAATGTTTTTTAATCACCTCCCTGCAGACCCACCGGCTGACCGAGCATCAACAAACCTTTAGATGGTCCGACCGATCTGCGGTCAGCATGGATGATGCGTCACCCCGCTGACCTTTTTTATCGGTCTGAAAGTGCTTGGCAATATCAAAACCTCATGGATGTACCTAGTCTTTATTAGTACGAGCAGCTCTCATGTGTGATCTACTGTAAACATGAGACGTCGTAGAGAGATAGCTTTATACTCTCACGGTTAGGTGCATACAGCagctttagttttatttaatttattcttttgttgAAGTGTGAGGAACGGCCGTTTCCTTGTTGAGCATCAGTTCTGTTTGTAAACCGATCTATTTATATGTTGAAGGCAGGTTTTTTCCTACTTTTTCTACTCTTAGTTGGTTAAACTGGTGCACTTATCCacatgtttgtttctgttttcctTCAGTTGTGAGTTTTTTAATCATGGTACTTAAGGCAGGGAAGGCAACATCTCTAAGTGCCCTGTTAAGAGGGCGCCTAAAGAAGTGCCTCGttcaaatcattatttaaaataatgtgttttttttttttttttgtggagattgctttagttgttTAGCATTACAGACCCTTCAGTTGTCTTGTGTGATAGGCATTACACTCCTTTGTCTTGGATTATAGATCCATTGTTAATTTAAggctacaaaaaaaaactttatttttaaattaaaagcaatGTCTCCTTTTCCCTGA

Function

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0035097 histone methyltransferase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0032452 histone demethylase activity molecular_function
GO:0032454 histone demethylase activity (H3-K9 specific) molecular_function
GO:0051864 histone demethylase activity (H3-K36 specific) molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6279 Predicted to enable histone demethylase activity (H3-K36 specific) and histone demethylase activity (H3-K9 specific). Acts upstream of or within blood vessel morphogenesis. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autistic disorder; breast cancer; carcinoma (multiple); head and neck cancer; and withdrawal disorder. Orthologous to several human genes including KDM4A (lysine demethylase 4A).

Ensembl:

ensembl_id ENSDART00000024302

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032076 lncRNA downstream 335392 17113329 ~ 17114836 (-) True XLOC_016270
TCONS_00032072 lncRNA downstream 509095 16933799 ~ 16941133 (-) True XLOC_016268
TCONS_00032068 lncRNA downstream 895752 16548872 ~ 16554476 (-) True XLOC_016266
TCONS_00032065 lncRNA downstream 930848 16517034 ~ 16519380 (-) True XLOC_016265
TCONS_00032064 lncRNA downstream 930937 16512861 ~ 16519291 (-) False XLOC_016265
TCONS_00032093 lncRNA upstream 300088 17792168 ~ 17947144 (-) True XLOC_016274
TCONS_00032096 lncRNA upstream 1335201 18827281 ~ 18830794 (-) True XLOC_016275
TCONS_00033797 lncRNA upstream 1608342 19100422 ~ 19105442 (-) False XLOC_016276
TCONS_00033798 lncRNA upstream 1660292 19152372 ~ 19181553 (-) False XLOC_016278
TCONS_00033799 lncRNA upstream 1660292 19152372 ~ 19181569 (-) False XLOC_016278
TCONS_00032080 mRNA downstream 56257 17267660 ~ 17393971 (-) False XLOC_016272
TCONS_00032079 mRNA downstream 57012 17267660 ~ 17393216 (-) False XLOC_016272
TCONS_00032078 mRNA downstream 57333 17266759 ~ 17392895 (-) False XLOC_016272
TCONS_00032081 mRNA downstream 57429 17317763 ~ 17392799 (-) False XLOC_016272
TCONS_00032077 mRNA downstream 214337 17200320 ~ 17235891 (-) True XLOC_016271
TCONS_00032086 mRNA upstream 86240 17578320 ~ 17827983 (-) False XLOC_016274
TCONS_00032090 mRNA upstream 86240 17578320 ~ 17947389 (-) False XLOC_016274
TCONS_00032089 mRNA upstream 86240 17578320 ~ 17947389 (-) False XLOC_016274
TCONS_00032088 mRNA upstream 86240 17578320 ~ 17947389 (-) False XLOC_016274
TCONS_00032087 mRNA upstream 86240 17578320 ~ 17947389 (-) False XLOC_016274
TCONS_00032082 other downstream 57420 17339418 ~ 17392808 (-) False XLOC_016272
TCONS_00032083 other downstream 57509 17353831 ~ 17392719 (-) True XLOC_016272
TCONS_00032073 other downstream 505837 16944272 ~ 16944391 (-) True XLOC_016269
TCONS_00032069 other downstream 834173 16615940 ~ 16616055 (-) True XLOC_016267
TCONS_00032063 other downstream 937806 16508824 ~ 16512422 (-) True XLOC_016264
TCONS_00032102 other upstream 1725658 19217738 ~ 19222433 (-) False XLOC_016279
TCONS_00032107 other upstream 1870718 19362798 ~ 19363161 (-) True XLOC_016282
TCONS_00032108 other upstream 2014231 19506311 ~ 19513296 (-) False XLOC_016284
TCONS_00032109 other upstream 2016020 19508100 ~ 19512644 (-) True XLOC_016284
TCONS_00032112 other upstream 2031506 19523586 ~ 19523683 (-) True XLOC_016286

Expression Profile

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