RNA id: TCONS_00032088


Basic Information

Item Value
RNA id TCONS_00032088
length 7978
RNA type mRNA
GC content 0.51
exon number 34
gene id XLOC_016274
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 17578320 ~ 17947389 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTAGATTGTTAGGCTAAATCCCACTAAATACCTGCATCTCATAAAGCCGTAACACAAATCTAAGCGGAGACTATCGATTCGCCAACGGCCGAATGGTGACGAATGTTTCCGAAAATTCGCGCAAGCAACCTGTGAGGCAGTCAGGGAGGGAGACGGCGTGATTGAGAGGACGGCAGGCGGGCAGACCAGCAGAGAGAGTCTCCGACCGCTCTGGAGCTGAAGCACAACTCCGCGACACACAAACTCTGGATTCACAATTTTACAACAATAGAAGCTTTTCCACTCCGCTGTAGTTATAGCGACCGGTCTCAATAACGGGATTATAACGGCCGCGTGGCACATTAGTAAAGGAAGGGGTCGTTACTCTGTGGAATCGAAGAATTTTTCCAGTCGATTTTAAAAGTGGATTTGTACGTGGCCAAGTGAACCCGGTGAAGCAAGAGGCTGCCGTGCACGGAAAGAAATGCAAACCGCGGCGGAACGGAGAGACGgTTTTAGTCTATGATTGCTTGAGAGCTGCAAGAGCAGAGCGGGGATCGAGGAGGAGCAGTGCCAACCTGGAACATGGTGCCTAACACTTGCACATCCGTGCCCCTCCTGCCCGTCGGGCTTCCTCTTCTGCTACTGCTGAGCTGCATACAATTCTCCTCTCAGGCAGACAGCTTGCCAAATTTCGTCAGATCTCCAGAGGACCAGACGGGGATTTCAGGAGGAGTGGCGTCTTTTGTGTGCCAAGCAGCGGGTGAACCCAAGCCTCGCATCACATGGatgaagaaaggaaagaaagtcAGCTCGCAGCGCTTTGAGGTGATTGAGTTTGATGATGGTTCGGGCTCAGTTCTGCGCATTCAGCCACTGCGAACTCACAGAGACGAGGCCATCTATGAGTGCACAGCCACCAACAGCCTGGGGGAAATCAACACCAGCGCCAAACTCACCGTGCTGGAAGaAAATCAGATTCCGCATGGTTTCCCCACCATAGACATGGGTCCTCAGCTGAAAGTGGTGGAGCGAACAAGAACAACTACAATGCTCTGTGCTGCCAGTGGGAACCCTGACCCGGAGATCACTTGGTTTAAAGACTTCCTGCCTGTAGACATCAACGGCAACGGGCGAATCAAACAGCTTCGCTCAGgagctCTGCAGATTGAAAACAGCGAGGAATCAGACCAGGGCAAGTACGAATGTGTGGCTACGAATAGCGCCGGGACGCGTTATTCAGCTCCGGCTAATCTCTACGTGAGAGTACGACGAGTTCCACCCCGTTTCTCCATCCCACCTACCAATCACGAGGTGATGCCAGGGGGCAGTGTAAACCTCACCTGCGTGGCAGTAGGTGCCCCGATGCCCTACGTCAAATGGATGACTGGTGAGGTGGAGCTCACCAAGGATGAGGAGATGCCTGTGGGACGCAACGTCTTGGAGCTCACCAACATCCGTCAGTCGACCAACTACACCTGCGTGGCTATATCATCCCTAGGTATGATCGAGGCAACGGCACAAGTGTCTGTCAAAGCTCTCCCAAAGCCTCCTACATCCCTGACTGTTACGGAAACCACAGCTACGAGTGTTACACTCACATGGGACTCTGGAAACCCTGAACCTGTGTCTTACTACATAATTCAATACCGGGCCAAGACTTCAGACACCAACTTCCAAGAAGTGGACGGTGTGGCCACCACACGTTACAGCATCGGCGGTCTCAGCCCATATTCAGAGTATGAGTTTCGAGTAATGGCAGTCAACAACATTGGTCGTGGGCCACCTAGTGAACCCGTTGAAACACGAACAGGTGAACAGGCACCTTCCTCCCCACCGCTGCATGTTCAAGCACGAATGCTGAGTGCCAGCACCATGTTGGTTCAGTGGGAACCACCAGAGGAACCCAATGGTCAGATCAGAGGCTATCGGATCTACTACACATCTGACCTGGATGCACCTCTTAGCGCCTGGCAGAAACACAACACAGACGATAGCCGTCTCACCACTATCTCCAGCCTGACCACCGGCATCACCTACAGCCTACGTGTGCTGGGCTTCACATCTGTAGGGGATGGACCACCATCTGATGTGCTACAGGTCAAGACACAGCAAGGAGTTCCTGCTCAGCCATCCAGCTTCGAAGCTGAAGCAGAGCTAGATACAAGGATCCTACTAACTTGGCTGTGGCCCGTGCAGGACCCCATCATCAAATACGAGCTGCAATATTGGGAGGCTGACTCAGACAACAAGATCCATGTCACCTTTGACCCAGCTGGCTCGTACGCTGTTGAAGGTCTGAAACCAGACACTTTGTACAAATTCTCTCTGGCAGCCCGCTCTGAAATGGGACAAGGAGTCTTCACTCACCCCATTGAAGCCAGGACGGCCCAGTCTGCCCCCTCTGCCCCCCCTCAAGACGTGCACCTGCTCAGTCTGAGCTCCACCAGCATCAAGGTGAGTTGGGTGGCACCACCCGCCGCTAGCCGCCACGGCGCAATAGTGCGCTACACAGTCAGCTACCAGGCAGTGAATGGAGAAGACACAGAGCGCCATGAGGTGCCGGACATTGGAGCGGATGCCTCCAGCTGTGTGTTGGAAGGTCTAGAGAAGTGGACGGAGTATCAGGTGTGGGTGAGAGCGCACACTGATGTGGGCCCCGGCCCCGAGAGCACGGCTGTGCGTATCCGAACCAATGAAGACGTGCCAGGAGCACCGCCTCGGAAATTGGAAGTGGAGGCTTTGAACTCCACCGCTATCCGTGTGACATGGAAACCTCCTCTTTCTGGAAAGCAGCATGGCCAGATCCGGGGATATCAGGTCATATACTCCCGGTTGGAGAACGGGGAACCACGGGGACATCCGAATATAATGGATGTCGCTCTGCCAGAAGCACAGTGGAAAATTGAAGAGTCTACGGAATATGAGGCTGTGATCGCTGGACTTGCCTCTGAAACCTCTTACTCAGTGACTGTGGCTGCGTACACAACCAAAGGTGATGGAGCTCGCAGCAAAGCCAAAGTGGTCACCACCACCGGAGCAGTGCCTGGCAAACCCACTATGATCATCAGCACCACCGTTGGCAACACGGCCCTTATCCAGTGGCAGCCTCCTAAAGACATGGTGGGTGAGCTGATGGGCTACCGGCTGCGCTACAAACGTCTGGAAGAGGAAAACTATGAGATACGCGAATTCAGTCGCACCGACGACCACCACACCGTCACTGACCTGCACAAGGGCGCCACCTACAGCTTCCACCTGAGCGCCAGAAACCGCGCTGGACTCGGAGAGGAGTACGTTAAAGACATCGGCACTCCTGAGGACGTGCCCAGCGGGTTTCCTCTTAACCTGCAGGTCGTAGGCTTGACTACCTCTACCACCCGACTGACCTGGGAGCCTCCAGCGTTGTCTGAACGTAACGGACGGATCATACATTACATTGTGGTTTACCGAGACATCAACAGCAAACAAAACAGCACCAACCGAACCTCCGACACACAGATGACCATCCAAGGGCTCCGACCTGACACCACCTATGATATCCGTGTGCAGGCGTTCACTAGCAAGGGTGGAGGTCCCATAAGTCCCAGTATCCAGAGCAGGACCATGTCTACGTCACCTGCATTTGCCACAAGTTTTGGTGTCAAAGCTGTGATGAAAACCTCTGTCCTTCTCACCTGGGAGGTGCCAGAAAATTATAAATCACAAGTGCCTTTTAAGATCCTCTATAACCAGCAGAGTGTGGAAGTCCAGGGGAATCTGAAGAGGAAGCTGATCACACGCCTGCAGCCGGACACTGATTACTCGTTTGTGCTGATGAGCCGGGGAAACAGCGCCGGTGGCCTACAACAGCAGGTCTCCATCCGCACTGCACCAGACCTGTTCAAAACTAAACCTGTCCTGTACACGGCAGACCAGACCAACAATGGCAAACTCACCATCAACCTGCCCAAAGTGCCCACCTCTGCTCCTGTCAGGTGTTATTACATTGTGGTCGTGCCCGTCTCTCAGACATCATCTCGTCAGTGGATTAATCCCGATGAGATGGAGCTGGATGAGCTCCTGGAGTCTAGTGAGGGAGCTCATCTCAGGAGACGTCGACGGCACACAGACACCGTAAGACCGTACATCGCCGCAAAGCTATCCACGCTCCCAGAAACCTTCACTCTGGGCGATGAGCTAGACTACAGCGGCTTCATCAACCGGCCTCTTCCCAACAACCAACACTTCCAGTGTTTTGTGATGGCTGAACTCAAGGACCAATACCCTGTTACTGCCAATGAGAAGCAGCGGACCTTCTCGGCTAGCCCATACTCAGACCCCATCATAGTGCAGGGTGAAAACCAAATGCAGCGCAGTGTGGACCAACCGGAGATGCTTTGGGTCATGGGCCCTGTGCTCGCTGTGGTGCTCATCATCATCATAGTCATCGCCATCCTGCTCTTCAAAAGCAAACAGGAGAGGAAGAGGGCTTCCCCCCTACCAAAAGACGATCATTCGGGTGGTGTGAAGGATTGTCTTCTGGCCAGCTCATCCGATCCTGTCGAAATGAGGAGACTCAACTACCAGACACCAGGAATGAGGGAACATCCTCCCATATCCGTCTCCGAACTGGCAGACCACATCGAGCGCCTCAAGGCCAACGATGCCCTCCGGTTTTCCCAAGAGTATGAGTCTATTGATCCAGGCCAGCAGTTCACATGGGAGAACTCCAACTTGGAGGTCAACAAGCCAAAGAACCGTTATGCCAACGTTATTGCTTACGACCACTCGAGAGTTGTTCTCACCCCTGTGGACGGTGTACCAGGGAGTGACTACATTAATTCCAACTACATTGATGGCTACCGTAAGCAGAATGCCTACATTGCCACACAAGGTCCTCTGCCTGAGACTCTGAGCGACTTCTGGAGGATGATTTGGGAGCAACGAGCCAGTACCATCGTCATGATGACCAGACTGGAAGAGAAGTCCAGAGTCAAGTGTGACCAATACTGGCCCATTCGTGGCACAGAGACTTATGGAATGATTCAAGTGACCATGCTTGATGCTGTTGAGCTGGCAACCTACAGTGTGCGCACCTTTGCCCTTTACAAGAATGGCTCTAGTGAGAAGCGCGAGGTCAGGCAGTTTCAGTTCATGGCTTGGCCGGACCACGGAGTGCCTGAATATCCCACCCCCATCCTAGCCTTCCTGCGCAGGGTCAAAGCCTGCAACCCTCCTGATGCTGGACCCATGGTAGTGCACTGCAGTGCTGGAGTTGGCCGTACAGGCTGCTTCATAGTCATCGATGCGATGTTGGAGCGCATGAAGCACGAGAAGACCGTAGACATTTATGGCCACGTCACGTGCATGAGATCCCAGAGGAACTATATGGTGCAGACGGAGGACCAGTACATCTTTATCCACGAGGCCCTTCTGGAGGCCGCCACCTGTGGAAACACAGAGGTCCCTGCCCGAAACCTCTACGCCCACATCCAGAAGCTCACACAGCCATCGGCTGGAGAGACCGTCACAGCCATGGAGCTGGAGTTTAAGAGACTCGCCAACTCCAAAGCCCACACCTCAAGATTCATCAGCGCCAACCTGCCCTGCAACAAGTTCAAGAACCGGCTGGTCAATATCATGCCTTTCGAGTCCACACGGGTGTGCCTGCAGCCAATCCGAGGAGTGGAGGGGTCCGACTACATCAATGCCAGCTGCATTGACGGATACAGACAGCAGAAGGCCTATATTGCCACTCAGGGTCCTCTAGCGGAGACCACCGAGGACTTCTGGAGGATGTTATGGGAGCACAATTCCACTATTGTAGTGATGCTGACCAAACTCAGAGAGATGGGACGGGAGAAGTGTCATCAGTACTGGCCCGCCGAGCGCTCAGCCCGCTATCAGTACTTCGTAGTGGATCCCATGGCCGAATACAACATGCCCCAGTACATCCTGCGAGAGTTCAAAGTCACAGATGCCAGGGACGGTCAATCCAGAACCATTCGCCAGTTCCAGTTCACTGATTGGCCAGAGCAGGGAGTGCCAAAAACCGGTGAGGGGTTCATCGATTTCATTGGGCAAGTTCATAAAACCAAGGAGCAGTTTGGGCAGGATGGACCAATCACTGTGCACTGCAGTGCTGGAGTGGGAAGAACAGGTGTTTTCATCACTCTCAGTATTGTCCTGGAGAGGATGAGATATGAGGGGGTGGTGGATCTGTTCCAGACGGTTAAAACCCTGCGCACACAAAGGCCTGCCATGGTGCAGACAGAGGACCAGTACCAGCTGTGCTACAGAGCCGCTCTGGAGTACCTGGGGAGCTTTGATCACTATGCAACGTAACCACTCCTGGACCACAGCCTTCTGGTACAACTCTTCAGGAGTGCACCAAGTGTTCCTTCTGAGCCCCTGTCCCCCTGCCCCATCCTGTACAGAGATCTGGGGCTGGGGGCGGGAAGGGCAGGCTATCCAGTGGCTggttaaccaatcagagcagtccGTTATTGACCGGCACCAAGAGATTGCTTTAAGAAACATAGACAACTCTCTTTCAAGAAGCaccatctacaaaaaaaaaaaagtcaaataaacgaTATTCTAGTGGTTTCTCTTTAGCGAACGCCAACCCAGACTACAGTCCAAGGCTACTGGTAGCACTAAATCTTCTTTTTCCTTCTCATTTGGCTATCATGATCATCAtcctttgttattattattattattaattcagtaTGACGATATTGTTTGTCTTATTTagaatatttgcatttttttaaatcattttttaacatTGTTTGTCTTAACGGCCTTAACTGTGGGGTCgatctttattttcttttgtttggtATTTTCTTTCTAATAGGTTATTTTAGCACAAGAGCATGTGTTTTCAACATGTTCCTGATACTAATACCAGAGGACCGGCGTTCTCTGAGCTGCTGATGGTTTGACTTTGTAACACGATTTTACTGTTTGTTATTTTCCTCGTTATGTATAATTGGGCTGAAATAAGCGGGTTCAACTTGTTGGAGAAGCCTTTAATAACGTCTCTTGTCTCTGAGAAACTCTCCAACCACAAgacgtatatatatatttgggttaGTGGTACTAAATtaagaagaaaataaacaagtgttTGGTTAGGGGGAAAGAAAATCAACTAACGCATCAAATCAAGGCTGTACAGAACTCAGTAGTGATTTGTGAAGATTAAATATGGggggttgaaaaaaaaacagccctcTCACCTGCTTTTCTAGGACATTTGAAGACCTGATATTGAAATGAGACCAATCGCCATCGGCACCTGTACAGTATAAACCACTCCTCGAAGGAGAGTCAGCTCTGTTTAATCCAACTCTTCTTTTTATACAGAAATATACgagatatatagaaatatatatacattcaaaaaatgtataattatgaataaatactaTTATAGATACAGTATATAAACAGCTTCTGCTCTATTGTCCATGAATCTCTCGAAACGTAACCCTGGACTTTTTCTTGATATACCAACATAGAGTTAAACACGAGAGACTGCTGTATGTGAGTCTATCCATGGTACAAAAGTTCTATCTACTGTATTATCCACGCACACCCCGGGTGTCTGGCGCTTTCTTCTGGTGGGTGGGGGTGGAGCAGCACAAGTCGACTTAAAACACTTCCTACAGGACGTCATGTTCATGCCTGCTCGATTACAACCGGCATGTCAAAGGGACATCTGGCCATATATGTTCCGAATATGTTGGCAGTGCATTTCTACCTTGTGAATGATTAGTGCTGTAGAGGTTCCATCTGTTGTATACACAGTCTGTTTTCTATTTGTTAATAAGAAAactggaatttaaaaaaaatgttgcaggAAAAAAACTCGATGTTAATAAAGTTCAATAATTGGTTTTTGTACAAAGCATCGTCTCCTGTGCTTTTTTAGACTGGCTTTGTTGTGTTGTTTGCTTCAAAGGGAAGAGTAAATGGCCGTGTCAAATACTTATGCCAAATTCAT

Function

GO:

id name namespace
GO:0097374 sensory neuron axon guidance biological_process
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0099560 synaptic membrane adhesion biological_process
GO:0016311 dephosphorylation biological_process
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008201 heparin binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-530 Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within sensory neuron axon guidance. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in liver and nervous system. Human ortholog(s) of this gene implicated in hyperinsulinism. Orthologous to human PTPRF (protein tyrosine phosphatase receptor type F).

Ensembl:

ensembl_id ENSDART00000184039

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032076 lncRNA downstream 463484 17113329 ~ 17114836 (-) True XLOC_016270
TCONS_00032072 lncRNA downstream 637187 16933799 ~ 16941133 (-) True XLOC_016268
TCONS_00032068 lncRNA downstream 1023844 16548872 ~ 16554476 (-) True XLOC_016266
TCONS_00032065 lncRNA downstream 1058940 16517034 ~ 16519380 (-) True XLOC_016265
TCONS_00032064 lncRNA downstream 1059029 16512861 ~ 16519291 (-) False XLOC_016265
TCONS_00032096 lncRNA upstream 879892 18827281 ~ 18830794 (-) True XLOC_016275
TCONS_00033797 lncRNA upstream 1153033 19100422 ~ 19105442 (-) False XLOC_016276
TCONS_00033798 lncRNA upstream 1204983 19152372 ~ 19181553 (-) False XLOC_016278
TCONS_00033799 lncRNA upstream 1204983 19152372 ~ 19181569 (-) False XLOC_016278
TCONS_00032099 lncRNA upstream 1204983 19152372 ~ 19181569 (-) True XLOC_016278
TCONS_00032085 mRNA downstream 85834 17451294 ~ 17492486 (-) True XLOC_016273
TCONS_00032084 mRNA downstream 86240 17450228 ~ 17492080 (-) False XLOC_016273
TCONS_00032080 mRNA downstream 184349 17267660 ~ 17393971 (-) False XLOC_016272
TCONS_00032079 mRNA downstream 185104 17267660 ~ 17393216 (-) False XLOC_016272
TCONS_00032094 mRNA upstream 750999 18698388 ~ 18830783 (-) False XLOC_016275
TCONS_00032095 mRNA upstream 755736 18703125 ~ 18830722 (-) False XLOC_016275
TCONS_00032097 mRNA upstream 1153033 19100422 ~ 19109304 (-) True XLOC_016276
TCONS_00032098 mRNA upstream 1172458 19119847 ~ 19128385 (-) True XLOC_016277
TCONS_00032100 mRNA upstream 1270197 19217586 ~ 19234368 (-) False XLOC_016279
TCONS_00032082 other downstream 185512 17339418 ~ 17392808 (-) False XLOC_016272
TCONS_00032083 other downstream 185601 17353831 ~ 17392719 (-) True XLOC_016272
TCONS_00032073 other downstream 633929 16944272 ~ 16944391 (-) True XLOC_016269
TCONS_00032069 other downstream 962265 16615940 ~ 16616055 (-) True XLOC_016267
TCONS_00032063 other downstream 1065898 16508824 ~ 16512422 (-) True XLOC_016264
TCONS_00032102 other upstream 1270349 19217738 ~ 19222433 (-) False XLOC_016279
TCONS_00032107 other upstream 1415409 19362798 ~ 19363161 (-) True XLOC_016282
TCONS_00032108 other upstream 1558922 19506311 ~ 19513296 (-) False XLOC_016284
TCONS_00032109 other upstream 1560711 19508100 ~ 19512644 (-) True XLOC_016284
TCONS_00032112 other upstream 1576197 19523586 ~ 19523683 (-) True XLOC_016286

Expression Profile

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