RNA id: TU549920


Basic Information

Item Value
RNA id TU549920
length 783
lncRNA type antisense_over
GC content 0.49
exon number 4
gene id G483875
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 19933244 ~ 19935726 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTATTTTATAAATTTACTGTAACCACGTAGATTGTTTGGGTCATTAACACACACCTcgcctgtgtgtctgtgcaccACGTGGAAGATGGTGTCATACTGTGGCTCCCAGGTCATGACCTTGTCGAAGCTCTTGCCCTGGATCCTGAACAGCATAAACTTGAGCAGGTCCAGCTTGATGGGCTGCTCTATGAACACCACATAGTTCTCTGACATGGCTGCAGTCACACAAcacagggatagaggtagagctgaGGGTATTATGGCTGCAGTCACACAACACAGGGATAAAGgtagagctgaGGTTATTATGGCTGCAGTCACACAAcacagggatagaggtagagctgaGGGTATTATGGCTGCAGTCACACATcacagggatagaggtagagctgaGGTTATTATGGCTGCAGTCACACAAcacagggatagaggtagagctgaGGGTAATGGCTGCAGTCACACATcacagggatagaggtagagctgaGGGTATTATGGCTGCAGTCACACAAcacagggatagaggtagagctgaGGGTATTATGGCTGCAGTCACACAAcacagggatagaggtagagctgaGGGTAATGGCTGCAGTCACACAACACAGGGATAAAGgtagagctgaGAATATTATGGCTGCAGTCACACAAcacagggatagaggtagagctgaGGTTATTATGGCTACAGTCACACAAcacagggatagaggtagagctgaGGGTATTATGGCTGCAGTCACACAAcacagggatagaggtagagctgaGGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU549854 lncRNA downstream 22133 19902066 ~ 19911111 (-) True LOC110525416
TU549869 lncRNA downstream 67887 19865138 ~ 19865357 (-) True G483832
TU549867 lncRNA downstream 69991 19862995 ~ 19863253 (-) True G483830
TU549089 lncRNA downstream 119159 19812912 ~ 19814085 (-) True G483192
TU549030 lncRNA downstream 220324 19711885 ~ 19712920 (-) True G483145
TU550016 lncRNA upstream 140562 20076288 ~ 20080062 (-) False LOC110525419
TU550018 lncRNA upstream 140562 20076288 ~ 20080062 (-) False LOC110525419
TU550021 lncRNA upstream 140562 20076288 ~ 20080062 (-) True LOC110525419
TU550046 lncRNA upstream 163585 20099311 ~ 20101296 (-) True LOC118964851
TU550109 lncRNA upstream 265017 20200743 ~ 20200947 (-) True G484026
XR_002473754.2 mRNA downstream 21861 19902009 ~ 19911383 (-) False LOC110525416
XM_021605492.2 mRNA downstream 71583 19844099 ~ 19861661 (-) True LOC110525415
XM_021605495.2 mRNA downstream 71584 19844099 ~ 19861660 (-) False LOC110525415
XM_021605491.2 mRNA downstream 71637 19844099 ~ 19861607 (-) False LOC110525415
XM_021605494.2 mRNA downstream 71642 19844099 ~ 19861602 (-) False LOC110525415
XM_036979563.1 mRNA upstream 142972 20078698 ~ 20088504 (-) False LOC110525419
XM_036979562.1 mRNA upstream 142972 20078698 ~ 20131730 (-) False LOC110525419
XR_005052034.1 mRNA upstream 161323 20097049 ~ 20100995 (-) False LOC118964851
XR_005052033.1 mRNA upstream 161323 20097049 ~ 20100996 (-) False LOC118964851
XM_021605503.2 mRNA upstream 516518 20452244 ~ 20463229 (-) False LOC110525421
TU549031 other downstream 212628 19710075 ~ 19720616 (-) False G483145
TU549032 other downstream 212628 19710545 ~ 19720616 (-) False G483145
TU548757 other downstream 359817 19569207 ~ 19573427 (-) True G482907
TU548483 other downstream 622251 19310423 ~ 19310993 (-) True G482658
TU548292 other downstream 741787 19191132 ~ 19191457 (-) True G482483
TU550275 other upstream 503581 20439307 ~ 20439684 (-) True G484175
TU550345 other upstream 648495 20584221 ~ 20585647 (-) False LOC110525433
TU550351 other upstream 652536 20588262 ~ 20608736 (-) True G484232
TU550546 other upstream 1071290 21007016 ~ 21009082 (-) False G484409
TU550547 other upstream 1071290 21007016 ~ 21009082 (-) True G484409

Expression Profile