RNA id: TU550546


Basic Information

Item Value
RNA id TU550546
length 1527
RNA type TUCP
GC content 0.48
exon number 4
gene id G484409
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 21007016 ~ 21009082 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGAACACTGTGAGGTTGTGTGCATTTAGGACACTATTTCACTATTTTAAATTATACAGTGTGTTGCTGTTGAATGGAGCCTACATCAAAACTGGCAGAAACAATAAGGAATGGGAGTTTGACAGCAATGTCATGTTGAGTTAATGTAAATTTGTGTAACATTATAGTTACAACTATAGTCCTTGAATGTTTCCTAATATTCCTCCTTTCCCTGGTCTTTCTCAGATGAAGCTGCCGGTCTTGGTGGTCATCTCACTGCTGCACCTGGGACAGTCCTGTGCCCAGTCTGCAGACCCCCCTCCACGCAGCCTCCGGGACATACTGTAGTGAGGAAGAGCTCCCTGAGACGGAAGGTGTCCCTCTTGAACCCAGTGCCGGAAGATACGGTCCCCCCCACTGAACAGTATAGGTCCAGTCCAGGCCCCACTGACCCCTCCTGAGTTTGAGGACGAACAGAAGCCTGCTCCATTCATGTTCGGGGACAATgtcatggggtggcagctCAACTTGCAGTGGCTGAGCTGGAATGGTTCTCTCCTCACTGTAGCTGTGGGCATCTACAACAGCTACACCGAACACACAGACTACATCTGCAATTATAACTGCGAAGCCGGCTTCTACACAAGGGGCCTTACTGCCAATACCCCTACGGTGACAGAGAGTACTACGTTCCAGATCCTGACCAACAGGGACCACTTTGAATATGTGGAGTGAAAAGAGGACTCACCTGGCTCGGTGCCCAAAGACTCGGTGCCCAAAGACTGGCTTGGGAAGGTGGTCCCCAGTTCGAGGCCTTCTTCCTGCCCTGGGAGGGTGATGAGTGCTGGTACAAGAGCTACCAGGTCCTGACCATCAACAGGGACGCCTACAGCCAGCACATCTTCCACGTCAAGTACGGCATCGATGAGGTGGAAATAttccactacccccAAGACCCTACAGTTCAACAGGGGCACCACTATGGTGGAAGCCCACAGCCACTCTGTGTCTGTGGAGCTCAACATAACACCCAACCACTCCTGTAATGTGTACATGGAAGGCCGCAAGTTCACTGCAGACATTCCCTTCACAGCCAGGCTAAGCCGTACATATGGCAACGGAGAGGCCCTGTGGACCTCTATCTCTGGGGTGTACAATGCGGTTCAGATCGGGGAGATCCGGGCCGTGGTGGACCGCTGTGAGCCTGTCATAGACGCCAAGCCCTGTCATTAAGACTAATATCATCCAAACTAATTCTAAATCTAAATCTACATACATCTACACTCACACTGTAAGTATACAGTctgctgtatactgtatgtcacaATCTATATTATCAAGTACTCCCTAGGTTATACCAACACGGATTAATGTGACACATGTAGCACATTTTACACAAGTATTGTACAGTTTGTGGTTCCTGGCCAGGTGTAAACTACAAAGCAATGGAAAAACTGACTACTGTGATTATTGCGTTCAATTTTTTTTTCACAATTTATGTCTAATGAATTAAATGACAGAAAATACAGAACGTGCCTGTTTTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU550549 lncRNA downstream 2252 21004483 ~ 21004764 (-) True G484411
TU550548 lncRNA downstream 2641 21004045 ~ 21004375 (-) True G484410
TU550536 lncRNA downstream 26373 20980396 ~ 20980643 (-) True G484400
TU550385 lncRNA downstream 361968 20641190 ~ 20645048 (-) True G484262
TU550372 lncRNA downstream 375660 20624675 ~ 20631356 (-) True G484249
TU550562 lncRNA upstream 15760 21024842 ~ 21025595 (-) True G484423
TU550563 lncRNA upstream 17718 21026800 ~ 21027422 (-) True G484424
TU550560 lncRNA upstream 19580 21028662 ~ 21029712 (-) True G484421
TU550561 lncRNA upstream 20864 21029946 ~ 21030666 (-) True G484422
TU550630 lncRNA upstream 105926 21115008 ~ 21115535 (-) False LOC110525458
XM_021604973.2 mRNA downstream 19148 20986307 ~ 20987868 (-) True LOC110525011
XM_021605571.2 mRNA downstream 67297 20926969 ~ 20939719 (-) True LOC110525450
XM_021605575.2 mRNA downstream 80958 20923163 ~ 20926058 (-) True lcn15
XM_021605570.2 mRNA downstream 84688 20878464 ~ 20922328 (-) False jak2b
XM_021605568.2 mRNA downstream 84688 20878767 ~ 20922328 (-) True jak2b
XM_036979588.1 mRNA upstream 22937 21032019 ~ 21037929 (-) False tor2a
XM_021605578.2 mRNA upstream 22937 21032019 ~ 21037968 (-) True tor2a
XM_021605585.2 mRNA upstream 105938 21115020 ~ 21121728 (-) False LOC110525458
XM_021605586.2 mRNA upstream 122049 21131131 ~ 21135682 (-) False zbtb26
XM_021605587.2 mRNA upstream 122049 21131131 ~ 21135690 (-) False zbtb26
TU550351 other downstream 398280 20588262 ~ 20608736 (-) True G484232
TU550345 other downstream 421369 20584221 ~ 20585647 (-) False LOC110525433
TU550275 other downstream 567332 20439307 ~ 20439684 (-) True G484175
TU549918 other downstream 1071290 19933244 ~ 19935726 (-) False G483875
TU549031 other downstream 1286400 19710075 ~ 19720616 (-) False G483145
TU550627 other upstream 110894 21119976 ~ 21121067 (-) True LOC110525458
TU551014 other upstream 287498 21296580 ~ 21298173 (-) True G484807
TU551114 other upstream 422848 21431930 ~ 21434719 (-) True G484895
TU551550 other upstream 824466 21833548 ~ 21834360 (-) True G485279
TU552186 other upstream 1251552 22260634 ~ 22263353 (-) True G485864

Expression Profile