RNA id: TU551881


Basic Information

Item Value
RNA id TU551881
length 245
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G485587
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22157374 ~ 22157618 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAATGCTCGgctttgaaaagccaactgacatttactcctgaggtgctgacctgttgcaccctctataaccactgtaattattatttgaccctgctagcCATCTATgcacgtttgaacatcttgaagaacagtctggccttaatggccatatACTCTAataagagaactggccacccctctgagcctggttcctctctaggtttcttcctaggttcctgcctttctctggagtttttcctagcc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU551878 lncRNA downstream 1696 22155460 ~ 22155678 (-) True G485584
TU551845 lncRNA downstream 26201 22130915 ~ 22131173 (-) True G485551
TU551837 lncRNA downstream 34780 22122250 ~ 22122594 (-) True G485543
TU551790 lncRNA downstream 61622 22095404 ~ 22095752 (-) True G485506
TU551778 lncRNA downstream 73300 22076978 ~ 22084074 (-) True G485494
TU551927 lncRNA upstream 8155 22165773 ~ 22166089 (-) True G485628
TU551942 lncRNA upstream 27215 22184833 ~ 22185065 (-) True G485643
TU551944 lncRNA upstream 29802 22187420 ~ 22187727 (-) True G485645
TU551950 lncRNA upstream 36964 22194582 ~ 22194888 (-) True G485651
TU551998 lncRNA upstream 83581 22241199 ~ 22241401 (-) True G485690
XM_021605618.2 mRNA downstream 262566 21892070 ~ 21894808 (-) True tubb2b
LOC110525119 mRNA downstream 378212 21775601 ~ 21779162 (-) False LOC110525119
XM_036979607.1 mRNA downstream 393251 21745476 ~ 21764123 (-) False LOC110525478
XM_036979608.1 mRNA downstream 393252 21751378 ~ 21764122 (-) True LOC110525478
XM_021605609.2 mRNA downstream 393259 21745476 ~ 21764115 (-) False LOC110525478
XM_021605623.2 mRNA upstream 58197 22215815 ~ 22231402 (-) True nr5a1a
XM_021605625.2 mRNA upstream 107005 22264623 ~ 22378999 (-) False nr6a1a
XM_021605626.2 mRNA upstream 281268 22438886 ~ 22441136 (-) True LOC110525492
XM_021605627.2 mRNA upstream 283626 22441244 ~ 22457748 (-) False LOC110525493
XM_021605629.2 mRNA upstream 283626 22441244 ~ 22457748 (-) False LOC110525493
TU551550 other downstream 323014 21833548 ~ 21834360 (-) True G485279
TU551114 other downstream 722655 21431930 ~ 21434719 (-) True G484895
TU551014 other downstream 859201 21296580 ~ 21298173 (-) True G484807
TU550627 other downstream 1036307 21119976 ~ 21121067 (-) True LOC110525458
TU550547 other downstream 1148292 21007016 ~ 21009082 (-) True G484409
TU552186 other upstream 103016 22260634 ~ 22263353 (-) True G485864
TU552199 other upstream 123108 22280726 ~ 22281026 (-) True G485877
TU553165 other upstream 680035 22837653 ~ 22840566 (-) True G486716
TU553428 other upstream 1093668 23251286 ~ 23253361 (-) False G486953
TU553500 other upstream 1227916 23385534 ~ 23385907 (-) True G487022

Expression Profile