RNA id: TU552379


Basic Information

Item Value
RNA id TU552379
length 1349
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G486037
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22528485 ~ 22529833 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAACacttaacaaactatacaaaaacgtgacgctatataatactagtgcagacacatgcaactagacatagataataacccacaaaatactcaaagaagatggctgcctaaatatggttcccaatcagagacaacgatacacacctgcctctaattgagaaccaatctaggcaaccatagacatatataaacacctagacatTAAACAACCCcaaaaacctacaaaacccctagacagtacaaaaaagacatatcacccatgtcacaccctgacctaaccaaaacaataaagaaaacaaagaatactcaggtcagggcgtgacacagtgaGCCATGCATCAGTTAATCATCATTTACAATGGGTGTTGACCATCACAATGGTGCAATAGTGTGCATTCCTTACATTCTTAAGTAAGGTTAGGCTGACATGGTAAACAACACATTGCATGTTCATCCTGTTGTTATTCTGCTGGAGACACATCAAACATCACTTAATTTTTTATACAGTAGAAGATCAGGATGAGCTTTAGGGACATTTGTAGCTGACACAGTCAGACTCTACTCATGGCTAAGTTCATTAACACAAACTGATTACAAGGCTTTCTAGGCATTGAGTAAGATCATCAATCTAATTTGATAGAAAGTTCCCTAATTGCCTGTGTTACGGACATCACTGTTCTTGCTTATTATACTTTCTCTCCTAGAGCAGCTCACACTGAGACTGACTGGAACTTGAGACCTCTGTCTTGCAAATAAACGTGACTACCCTCTTGACAACTTCTCTGGGGCGCGGGGGGAGACATTTCAGGCTGAGGAGAGAGGTTACAAATCCCCATCTGTTACACCTGCTCATTTGAATTCTCTGTTGCTGACCAGGTGAAACAATATGAAACAGACTGATTAAAATAATCTACTGGAGTTGCAGAGTAAAATGTATGAAATTTCAGAGTAAAGGAGTAGCCTCTCCTTATATCACATTATGATCACATTTGTTTGACACTTTGATATTGGCAAAAGAgcagatctgattggtcaaaataccttATTGGTGGAAACATAATTGCGCTGCCTGTGTTAATGCACTGTTTAACTGAACAACAAGTTATTTATGGACACTTTATGAGAGCATAATACAACTGATTACCTTCAagtgctctctcacacacattatgAAATAATTATAAAATTAAAACTCCAAGTAGGAAGTAAAGTATACAGTGGAAAGACATTCATTTGTCTAAGTGTGGCTAGTGATTACActaatttccacaaagttagGTTATCATGGAGATGACACAGAAAACAACAAAGTTATGGCATAGTTAATCAAAAACAACCATATAGcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU552358 lncRNA downstream 13801 22514437 ~ 22514684 (-) True G486024
TU552298 lncRNA downstream 101357 22424226 ~ 22427128 (-) False G485969
TU552300 lncRNA downstream 101357 22424226 ~ 22427128 (-) True G485969
TU552282 lncRNA downstream 121219 22406935 ~ 22407266 (-) True G485959
TU552257 lncRNA downstream 167929 22360190 ~ 22360556 (-) True G485935
TU553006 lncRNA upstream 10769 22540602 ~ 22540811 (-) True G486573
TU553008 lncRNA upstream 13530 22543363 ~ 22543636 (-) True G486575
TU553019 lncRNA upstream 50167 22580000 ~ 22580206 (-) True G486586
TU553027 lncRNA upstream 58141 22587974 ~ 22588195 (-) True G486594
TU553045 lncRNA upstream 85266 22615099 ~ 22615377 (-) True G486612
XM_021605631.2 mRNA downstream 64124 22460769 ~ 22464361 (-) True LOC110525495
XM_021605632.2 mRNA downstream 64337 22460769 ~ 22464148 (-) False LOC110525495
XM_021605629.2 mRNA downstream 70737 22441244 ~ 22457748 (-) False LOC110525493
XM_021605650.2 mRNA upstream 20381 22550214 ~ 22572551 (-) False LOC110525498
XM_021605648.2 mRNA upstream 20381 22550214 ~ 22572552 (-) False LOC110525498
XM_021605646.2 mRNA upstream 20381 22550214 ~ 22572554 (-) False LOC110525498
XM_021605649.2 mRNA upstream 20381 22550214 ~ 22572554 (-) False LOC110525498
XM_021605645.2 mRNA upstream 20381 22550214 ~ 22572557 (-) False LOC110525498
TU552199 other downstream 247459 22280726 ~ 22281026 (-) True G485877
TU552186 other downstream 265132 22260634 ~ 22263353 (-) True G485864
TU551550 other downstream 694125 21833548 ~ 21834360 (-) True G485279
TU551114 other downstream 1093766 21431930 ~ 21434719 (-) True G484895
TU551014 other downstream 1230312 21296580 ~ 21298173 (-) True G484807
TU553165 other upstream 307820 22837653 ~ 22840566 (-) True G486716
TU553428 other upstream 721453 23251286 ~ 23253361 (-) False G486953
TU553500 other upstream 855701 23385534 ~ 23385907 (-) True G487022
TU553494 other upstream 860184 23390017 ~ 23392062 (-) True G487016
TU554033 other upstream 1053203 23583036 ~ 23585554 (-) False LOC110525180

Expression Profile