RNA id: TU553104


Basic Information

Item Value
RNA id TU553104
length 1122
lncRNA type intronic
GC content 0.41
exon number 2
gene id G486658
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22688955 ~ 22690157 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGtaggagaggtgaacaaagttgttgctgtaggagaggtgaacaaagttgttggtgtaggagaggtgaacaaagttgttgctgtaggagaggtgaacaaagttgttgctgtaggagaggtgaacaaagttgttggtgtaggagaggtgaacaaagttgttggtgtaggagaggtgaacaaagttgttgctgtaggagaggtgaacaaagttGTTGCTATCCATAAATAAGGAAAGCATCCTGGTACcgacaacctggatggtaaattgCTGAAGTTGGTAGCAGAGTACATTGGGACTCCTGTTTGCTACATCTTCCGTTTAAGTCTAGATGACGGTGTGTGCCCTCGGGCCTGGAGGGAGGCAAAGGTCATTCCGCTGCCCAAGAATGGCAAAGCACCCTTTAATGGTTCAaacagctgaccaatcagcctgttaccggTGCTTAGCAAACTTTTGGAAATACCATGTTTAaccaaatacaatgttattttacaGAAAAACAATTtaagactttcagcatgcttatagggaagggcaccTAATAACATGCCCTGACAAAtgacaaatgactgatgattcgCTGAAAGAAAttaataaaaagattgtgggagctgttttgttaaaTTTCAGTGCACCTTTTGATATCATTGATCATAACCTATTGCAGAATACTGAGGTGTTATGGATTTACATTCTCTGCCTAATCATTGACTGAGTTAcctatttacactgaacaaaaatataaacgcaagatataaagtgttggtcccatgtttcatgagctgaaataagctgcctgaaatgttccatacgcacaaaaagcttatttctcagaaatggtgtgcacatttgtttacatccctgttagtgagcatttctcctttgccaagataatccatctacctgccacaccacaggtgtggcatatcaagaagctgattaaacagcatgatcattacacaggtgcttcGGTGGGGACAATAAAAcgtcactaaaatgtgcagttttgtcacacaacgctacatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtattgtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU553096 lncRNA downstream 308 22680380 ~ 22688647 (-) True G486651
TU553092 lncRNA downstream 14501 22674213 ~ 22674454 (-) True G486647
TU553088 lncRNA downstream 20535 22667816 ~ 22668420 (-) True G486643
TU553087 lncRNA downstream 21903 22666771 ~ 22667052 (-) True G486642
TU552991 lncRNA downstream 44362 22642795 ~ 22644593 (-) False LOC110525506
TU553125 lncRNA upstream 22250 22712407 ~ 22712833 (-) True G486679
TU553133 lncRNA upstream 40781 22730938 ~ 22731896 (-) True LOC110525508
TU553139 lncRNA upstream 49338 22739495 ~ 22739694 (-) True G486691
TU553140 lncRNA upstream 50787 22740944 ~ 22741206 (-) True G486692
TU553177 lncRNA upstream 89846 22780003 ~ 22781555 (-) True G486727
XR_002473764.2 mRNA downstream 42867 22644152 ~ 22646088 (-) False LOC110525506
XM_021605656.2 mRNA downstream 52564 22627955 ~ 22636391 (-) False LOC110525501
XM_021605657.2 mRNA downstream 52564 22627955 ~ 22636391 (-) True LOC110525501
XM_021605653.2 mRNA downstream 71389 22593509 ~ 22617566 (-) True LOC110525500
XM_036979627.1 mRNA downstream 71397 22593509 ~ 22617558 (-) False LOC110525500
XM_021605683.2 mRNA upstream 36928 22727085 ~ 22730428 (-) True derl3
XM_021605680.2 mRNA upstream 40350 22730507 ~ 22746609 (-) False LOC110525508
XM_036980626.1 mRNA upstream 68479 22758636 ~ 22759601 (-) True LOC110525513
XM_021605690.2 mRNA upstream 85842 22775999 ~ 22777465 (-) False LOC110525517
XM_021605691.2 mRNA upstream 85843 22776000 ~ 22777439 (-) True LOC110525517
TU552199 other downstream 407929 22280726 ~ 22281026 (-) True G485877
TU552186 other downstream 425602 22260634 ~ 22263353 (-) True G485864
TU551550 other downstream 854595 21833548 ~ 21834360 (-) True G485279
TU551114 other downstream 1254236 21431930 ~ 21434719 (-) True G484895
TU551014 other downstream 1390782 21296580 ~ 21298173 (-) True G484807
TU553165 other upstream 147496 22837653 ~ 22840566 (-) True G486716
TU553428 other upstream 561129 23251286 ~ 23253361 (-) False G486953
TU553500 other upstream 695377 23385534 ~ 23385907 (-) True G487022
TU553494 other upstream 699860 23390017 ~ 23392062 (-) True G487016
TU554033 other upstream 892879 23583036 ~ 23585554 (-) False LOC110525180

Expression Profile