RNA id: TU553170


Basic Information

Item Value
RNA id TU553170
length 4547
lncRNA type read_through
GC content 0.42
exon number 2
gene id G486721
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22814253 ~ 22827725 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGGCTCCTCCATGAGGGGAGCCTCTCTAGTTGCAGGCAAGCTCTGCAATGAGGTCTGGGACCTTGAAGATAAACACACAATCACCACAAATGTGACCAACTGCTATCTAATCTGGGTCATTAGTGAGCCTGATAACCAAATTAGAGCAATGATGGTTTACTTCTCATACCACCGTAGTTCTAGAAGCCTAAAGCCAACTGACACGATTTTTTGCCTGATTTTTATGTTTGTACGACATCAGAATATGATTAATTCTGAAAGGCTGATCTATTTATTCATAGATGACTTTATGGCTTACCCAGTTAAAAATGACTTTCACCTAGACCCACCCCCTCAGTGGCAACATTTCTGACCAGAACTTAAAACTACAAGGTGTGAAttccaagttaataatttatgATAAGTATGGGTCAGGTCTTGCAATTATTAAGTTGAAATATTGCTGTGAACATACCTCTTAGGCGAACAGCATGGTGATGAGGTTCTGCGAGTGGATTTTTGGCGGAACCCTGCactgccattcctcctcctctccttagtccagtagttcatctcactgatcagcagccttttctctctctcatccagactgcctaaggaatcctcagaccctgtcagagagcactgggattctggggaggttgccccactcctcaggttcacccccatgatacgagctagcgctggtaggagaatgcggagggctgtctgggtcacgactttaacaatcttcagacacagcatggagagctgctcgaatgtgagctatggccaacaaacagagtaatgtttttgtcaatcaagcaattccatgacaccattccctatataagggcacaacttttgaccagaaccttatgtgGAGAGACTTACGTTATTTTTCATGCCATGCTGAATCACCCTCCATTGGctagagaaaagaaaagaaaggaaacatATTTTACCTGCACACTGGTGTTGAGTTAGTGGAGTCACTAGATAGCCATGTCAGGGAAAATAAAAGTGTATTTAATTAAGCTATTAGCAAGTACATGAGACATTTTGTTCTTGATTTACAGGAAGAGTTAGGGGTGTGGTTACAGTGATGTTAGGTGTAGTGTCTAAAATCCCATTTGTGGTTAGAAGGTGCACTATGACTATAAATTCAGAGTTGTTGTATGTGAGGTTGGAAAAAGACATGGGACTTGCTCATCAGTTAGactcctcaggaaggagaggaggattgggGCACAGCATGTCCCAGTCTTGAGAGAAGGCATTAGAGTCCTCTgagcctccttctccagctgctcAATGATAGATCCCCTTTCCCGGAAACCACACCCGGGTGTCTGAGAAGACTCTGGGAAACCGCAAAGAGAAATCTAAAGTTGAATCTGAACTTGATCCCTCATTTCTTTCACCTTTAGTGATTTGATTGCACTGGACAGGTAAAAGCACATCTCTCTGCGTGCCTCCactatattgctttcacctatatAGATACTATCTTCTCAGATCAGTGCTGATGAATTTGAATACAACCTGCAACCAACATGAAGTAATCTCAGACCTGCACCAATGCTGCTGTCTTCCTCCACGGAAGTCTTCTTGGCGCGGCCACTGGACTTACGTTTAGCCTACATGACAACAGATTATAGGTCTCATAGCAGATCCAAGGTCAGTGTAGCGTCTCCTCCTAATGCTTTAAGGCTAGGATTTAGTGACAGTAAactaatcctagatctgtgcctaagtagGCAGAACATGTGTAGAGGACAGCATATTTCTTACCTtgcctcctgtcctgttcttGTTGGTCTCATGTGTCTCTGTTTCATCCTTCATATTCTCCACAACCTTATTTTGGTCATCCGGGGGATCCTCCCATTTCACGCTCTGGTGGATAAATGAGAGGTCAATATCAGTCCTAGGTTGTGACTTTGTGAAACAACTTATTCGCTAATATTTTAAACAAAACGGCAATAGTGGTCAGATTTCAGTCCATGGATCAAACCAGTGAGACATATTGCTTTGGTAGTGACCTACTATATTGTTAGTAATTTCTCCTCTAAACTCAAAATAGGCTAAATGAACCATACCTTGCTGTCATCTGACATGATGTGTAGGAAATACTAATACCTCCTTTAAAAATACGTCAGTGAACCATCGGCAGACAACTGAAGTGAATATGAATGTCCTTGAATTATGCCtaagcattgttgaatactcgattCCGATTGGCTGAAGCCAGAGCATTCTTCAAAGATGTCATACACACATGATGTCACAATTAGGCCTAAATCTAATGTCTATATGAACTGTCAATGTCATTAGAAAACAGATCATAGCTTGTCAGCAGGGCATTACATTATTTTCATCCATCCGTCAACACAAATGGCATGTCAACGTTCCCCAAATAATAAAGCCAAGTCGAGATGTATGGTTCTTCATCCAGAGGACGAAGCACCATTGTATCATCTAAAACCTTCAGAGAGATCCCTTAAAACTGTAGTATAAATTCTCCACATCTGTTCTGGTAGCTAGGTTAATTTAGCGAGACATGGCCAAATCCAACACATAGCGTTTCTACTGGGTCCTGCTTAGAGGTGACTGTCTGTCATGTTGCTAGTTGTAATGACGCTTTTAAAACAACAAAAGGTATTTGTAATTGCTCTGGGAGCGTAATTATTGCAGAGCCCAGCTACACATCCTGCTCGCTGGGCTCATTATGGACAGCCAATGAGCAGTTCAGGTGAAAAAGTCAGCCAGATCTGATCTCTATAACATACATGATACTAGGATCCTGTAGCAACCTGCCGGCCTGCACAATCCTCCATGGCACGAATGCTACACGCGCAATATATTATGCTAACATCCCACAACAATTCCCCAATTGGAATTACTTGCCTAAACTTCCAATCATACTTATTTTCTAATATCAACCATTGTTTCTGCACTTAAGGCAGACTTGCCATTAGAACAAGATGGAATTAGGACAACTGTAAAGCTCGTTAAACGTGGGCTAAAATTAACCTTACCTGGCTGTCGTCAGCCATTATGTGTAGCCCGTTAATTAAGGCTCTGCGCCTCTGATACTGCAGCtgttctgataggctactgtagcttTTCTGTAGCTGTTAAACTCGTCTAATCGTATCCGTTGAAAACCGGTCAGTGAACCGTCCTCAAACACAATGAACTGATGTCAATATGGACATTAACCTTCACATAAAgatatacatgacgtcagatatGCCTAGACGTATTGTTGACTTGATCAGAATACATATCATACATAGTACGTGCTGTTGACAGCCTACCCCGAAATCAAACAGGAACATGGattttgtgaaatctgttgtgaatgtatagGGATGTTTTTACAATTgcataactgccttcattttactggaccccatgaagagtagctgctgtagctaaaggggatccacaataaatacaaatacaaacccaATGCAACATGATAATACATGCATCAACTTGTTTTGACATATCACATGGGATATGACAGTAAACcaacagaccttgagaggagaTAAAACATCATCTGTTGATCTATTTCACAGGTTTCTGGTGCTTTCTAAGCATTCTACATGTGTTGGGGAAGGACAGTGGGATCTCTCCAGAGCATCTAATTACATCAATCATGTCTTGCCATGCATGTGATATGAGATAATGTTATGCACCACGTAAATATACATTGCCTAAGGCTGCAGTGCTATACTCCATGGAGACAGTGCTCAATGTTTATTTTACATGATGGATATATGCTACTTCATTTCatacaatcaatcatcaatcaatcagtacaatttatttataaagccctttttacatcagcagatgtcacaaaatgcttattctgacacccagcttaaaacctcaaatagcatgcaatgcagatttagaagcacggtggctaggaaaaacaggaacctaggaagaaacctagagaggaaccaggctagtcctcttctggctgtgccggtggagattataagcgTACATGGCCAATAAGGCCAGATCATTCTTCAAGCATTGTAGTTCAAACAttcttcatagatgaccagcagagtcaacaaaataatgtggttatagagggtgcaacaggtcagcacctccggagtaattatcagttggcttttcaaagccgaacattcagaggtcgagacagcaggtgtggtagagagagagagagagagagagagagagagaggtgggggagagagagagcgaagatcgAAACAGCAGGTCCATGAAAAGGTATCACGTCTGGAGAACACACATGCCTCTTCATGTGATACATGATGTTTGGCTGTGCTGTGCTAAGTGTTATCTTATGGGTTTGGTGATTGTTCTGTGTGAAGCCGTATTCTGCATTGCATCatggaatgtgatgtgaaatccCTGGGCCTATGGCTGTTGAAGCTACTCCACTGCACTGCTGCTCCACTGCActtcccttctcccccgattgctcagctctaggaagagtcttggtggttccaaacttcttccgtttaagaatgatggaggccactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU553177 lncRNA downstream 32698 22780003 ~ 22781555 (-) True G486727
TU553140 lncRNA downstream 73047 22740944 ~ 22741206 (-) True G486692
TU553139 lncRNA downstream 74559 22739495 ~ 22739694 (-) True G486691
TU553133 lncRNA downstream 82357 22730938 ~ 22731896 (-) True LOC110525508
TU553125 lncRNA downstream 101420 22712407 ~ 22712833 (-) True G486679
TU553279 lncRNA upstream 159189 22986914 ~ 22988291 (-) False G486817
TU553280 lncRNA upstream 159948 22987673 ~ 22988702 (-) True G486817
TU553277 lncRNA upstream 178409 23006134 ~ 23010715 (-) True G486815
TU553420 lncRNA upstream 384971 23212696 ~ 23214656 (-) True G486949
TU553423 lncRNA upstream 404392 23232117 ~ 23232587 (-) True G486952
XM_036980627.1 mRNA downstream 16905 22794034 ~ 22797348 (-) True LOC118964915
XM_036979661.1 mRNA downstream 20492 22791807 ~ 22793761 (-) True LOC110525531
XM_021605690.2 mRNA downstream 36788 22775999 ~ 22777465 (-) False LOC110525517
XM_021605691.2 mRNA downstream 36814 22776000 ~ 22777439 (-) True LOC110525517
XM_036980626.1 mRNA downstream 54652 22758636 ~ 22759601 (-) True LOC110525513
XM_021605714.2 mRNA upstream 14755 22842480 ~ 22848238 (-) True LOC110525528
XM_036979650.1 mRNA upstream 20805 22848530 ~ 22887954 (-) False LOC110525523
XM_021605705.2 mRNA upstream 39998 22867723 ~ 22890688 (-) False LOC110525523
XM_021605707.2 mRNA upstream 39998 22867723 ~ 22890689 (-) False LOC110525523
XR_005052037.1 mRNA upstream 39998 22867723 ~ 22890689 (-) False LOC110525523
TU552199 other downstream 533227 22280726 ~ 22281026 (-) True G485877
TU552186 other downstream 550900 22260634 ~ 22263353 (-) True G485864
TU551550 other downstream 979893 21833548 ~ 21834360 (-) True G485279
TU551114 other downstream 1379534 21431930 ~ 21434719 (-) True G484895
TU551014 other downstream 1516080 21296580 ~ 21298173 (-) True G484807
TU553165 other upstream 9928 22837653 ~ 22840566 (-) True G486716
TU553428 other upstream 423561 23251286 ~ 23253361 (-) False G486953
TU553500 other upstream 557809 23385534 ~ 23385907 (-) True G487022
TU553494 other upstream 562292 23390017 ~ 23392062 (-) True G487016
TU554033 other upstream 755311 23583036 ~ 23585554 (-) False LOC110525180

Expression Profile