RNA id: TU553277


Basic Information

Item Value
RNA id TU553277
length 4553
lncRNA type read_through
GC content 0.43
exon number 2
gene id G486815
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23006134 ~ 23010715 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTTATTGAGCTCATGTCAAATACACATTGGATAAACAAAGTGGTAAAAACAACAAACGAGGGATAAGGTGAGATATCAGGATTACTTGGATAAACACCATTGAGATTATCTGAGTGTATTGCTTCAATGTTTTAAATGCACTGAGTCTCTTTTGTAAATACAGTGATTAACAGTCTGAGGTGGTCATGTTAGCAAAACTAGAGGAAAAAGGTAATTTATGAGTCATAAAGCCTACACAGTACCATACATTTTACATCATTTGTCACATACAATCATATGAATATCTGCATTTGTATGCAATCCCAGCATAGCTAATTTGTTAGCAAGTAAACCTGCAAACATGATTGTATGTCATTAGTTGTTAGTTTAAGTATTGGTCAAGGCTTTGacattgatgatgatgatttggTGTAGGTTTTATGGTGGTTCTAATGAAAAGAACACTATCAAAGCAAAGTAGGATTATCAAGCCTATGGCAAAGCCCCCCACCACAATTTAAACATTGATTGTTGTGCATAATCTTAAATCAACATGCACCATAATTGTCCATATTAATTCACAATAACACTTGATTCCAGATTACTTTGAATTTTCATTCCTTTTCACATATCAACGAGAACATGGAAAACATATAGCtgtctgggttttctgtgcatttgcaagatagaacagctgcctccgggtTAGAGAAGGTGTAGCTATTTGTCAATAATAGCTGGTACATGAGATCTAATATTAAtcaagtcttgaggttttgctcccctgaggtagagtatctcatgataagctgtagaccacactatttaccaagagaattttaatctatatttttcatagctgcctatttaccaccacaaaccgatgctggcactaagaccgcccTCAACGAGCTGTAttaggccataagcaaacaagaaaatgctcatccagtggTGGCGCTCCTTGTGGCCgcggactttaatgcagggaaacttaaatccgttttacctcatttctaccagcatatcaaatgtgcaaccagagggaaaaaaacctCTGGACCAACTTTATTCCTCACACAGAGACGCGCACAAAGCTCTGACTCGCCCTCcatttagcaaatctgaccagttccgggattcttccggtggcgtgaggagtacaccacatcagtcactggctaaatcaataaatgcatcgatgatgtcgttcCCACGGCGACCGTACGCACATACCCCAatcagaagtcatggattacaggcaacattcacactgagctaaaggctaccACATTCAAGgggcgggactctaacccggacacttgtaagaaatcccgctgtgccctccgacgaaccatcaaacaggcaaagtgtcaatacaggactaagatcgaatcgtactacaccggctccgatgctcgtcggatgtggcagggcttgcaaactactatggactacaaaagggaagcacagccgtgaaaCAAgcttaccagacaagctaaataactttTATGcacacttcgaggcaagcaacactgaagcatgcatgagagtaccagctgttccggatgactgtgtgatcacactcttcGTAGCCGATGTGCGTAAGACCATTAAACAGATcagcattcacaaggccgcagggtcagatggattaccaggacgtgtactgcgagcttgcgctgaccaactggtatctttactgacattttcaacctgtccctggccaggtatgtaataccaacatgtttcaagcagaccaccatagtccctgtgccgaagaacaccaagttaacctgcctaaatgacaaccgacccatagcactcacgtctgtagtcatgaagggctttgaaaggctggtcgtggctcacataaacaccattatcccagaaaccctagacccactcaaatttgcataccgccccaacagatcaaccaatcaaatgtatttataaagcccttcttacatcagctgatgtcacaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactcccagaTGACgcactattgcactccacactgctctttcccacctggacaaaaaggataacctatgtgagaatgctattcattgactaaagttcaacaccatagtgccctcaaagctcatcactacgcTAAGGACCCCGGCACTAAACACCtcttctgcaactggattctggacttcctgacaggcagcccctaggtggtaaggggaggtaacaacacatccgccacagtgatcctcaacacggtgcccctcaggggtgtgcgtgctcagtcccttcctgtactcccttttcacccatgactgcatggctaagcacgactccaacaccatcattaagttagccgacgacacaacattggtaggcctgatcaccgacaacgatgagacagcctatagggaggaggtgagagacctggcagtgtggtgccaggacaacaacctctccctcaacgtgatcaagacaaaggagatgatcgtggactacaggaaaagaaggaccgagcatgcccccattctcatcgacagggctgtagtggagcaggttgacacttccttggtgtccacatcaccaatgaactgtcatggtccaaacacaccaagacagtcgtgaagagggcacgacaatgcctattccccctcaggagacttcaaaaagttctacagctgcaccatcgagagcaacaccaccttgtatggcaactgctcgggccCCAACCACAAAGCGATATAGAGGGtcaaagcttcctgccacccaggacctctataccagacagtgtcaaaggaaggccctaaaaattgccaaagactccagccaccctagccatagactgttctctcgctACCGcagggcaagcggtaccggagcaccaagtctaggtccaaaaggcttcttaacagcttctacccacaagccataagactcttggaCAGCTAACCCCCccccatttttacactgctgctactctctgcttattatctatgcatagtcactttacctctacctacatgtatatattacctcaattaccttgactaacctgtgccccctcacattgactctgtaccagtaccccttgtatataacctcgctacttttattttattgttgctctttaattatttgttatttttatttattgtttacttcagtttattttagtaaatactttaacactttttcttaactgcattgttggttaagggtttgtaagtaagcatttcaggtctacacctgttgtatttggcgcatgtgacaaaatttgatttgatcaacaaACCAACAGCAAAATCCCATATAATAAGACATAACAACTCTAGATGCCTTCTGCATATTGTAAACTGTTTTAACGAATGGTGTAATTGCATGCCTCCCAGTGATGTACCACCTGGTTTCACCAAGAGTAAACAGATGGTATATGGCAGTTATTATCATGAGACTTTTGATAGTCCTTAGAGCAAAGCAAAACAGGTTGTCCACAAGAGGCTGCACCCATAACTAAAAATTAGACTGCCTTAGTTTGAGGCTTTTGTAATCATATCATCTGaatacacaaatcaaaatataaataTTGGGGTAATTGTGAATTGTACAAGATCTGATCAAATACACATGCACCAAGAAGCCAAATGTGCCACCCATCACCCAGAAACAACCTCAGAGGGTCAAGTTCTATGTCACTTACAGCTCCCATGTAACACTAGACTAAGAACAAATAAAACATCCATAAAACCTGGATTACACATTTGTTATGTGTAATCCTTTTAAATTGAGGTAAATTCAGATGCCAGCAAACCGGTATATCCACTGAATAATCATAGCTTAAGTCTTAACATAACTTTTTGGTTGGTTCGGAAAGTTTCATTAAAACGGAGTGAGTAGGACCTCAGAGACTTGACTGGGACATGATTGGTAGCAGACATTGTGATTATCTGGGTAAAGGACCCAGTCAACAAGCACACTCACAAACCCTCCAGGGAGAGAAAAACCACCACGAGAGAGTAGAACTAACATTAGGCAAGAGGGATCAAATGACTGTGGAACGACAAAAACATGTTTGACAAGGTTTTGCAGACAGGCCGACATTATGTAAAGGTGATTGTGAGGATGGGACACTTGGTGAGAACCTAATAACGAGAAGAACTTTCACGtcttttaaattcttcaagcacAACAAACAAATTGCATAAGAAACTTGATACGAAGTAGAAAAACTGTTAAGCAGCAGATAAAAAAGCATGTTAATTTACAGTAGTGACATCTTACATCattgcaaccctgtacatgtgactattaaacttGAAATCTAATCTATATTTTTCCAAAATAAATTCACTTAAATTCCAGTTAGGAAATGGAGGGACATTTTCACTGGTAGGTTTCTCAAATTCATTCCTCTTACGAAAAACAACAACCTCtcagaaaaaagaaagaaaaggtgTCTGACCAACCAAATCCCTTCAATGGCAAAAGAAGGGGTGCTGAAGCCTTTTGCTGAACGGACTATTTGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU553280 lncRNA downstream 17432 22987673 ~ 22988702 (-) True G486817
TU553279 lncRNA downstream 17843 22986914 ~ 22988291 (-) False G486817
TU553170 lncRNA downstream 178409 22814253 ~ 22827725 (-) True G486721
TU553177 lncRNA downstream 224579 22780003 ~ 22781555 (-) True G486727
TU553140 lncRNA downstream 264928 22740944 ~ 22741206 (-) True G486692
TU553420 lncRNA upstream 201981 23212696 ~ 23214656 (-) True G486949
TU553423 lncRNA upstream 221402 23232117 ~ 23232587 (-) True G486952
TU553426 lncRNA upstream 244154 23254869 ~ 23258106 (-) True G486953
TU553478 lncRNA upstream 339978 23350693 ~ 23351167 (-) True G487001
TU553482 lncRNA upstream 344800 23355515 ~ 23355898 (-) True G487005
XM_036979658.1 mRNA downstream 8067 22992473 ~ 22998067 (-) False anapc7
XM_036979659.1 mRNA downstream 8188 22993425 ~ 22997946 (-) True anapc7
XM_021605711.2 mRNA downstream 8203 22992473 ~ 22997931 (-) False anapc7
XM_021605694.2 mRNA downstream 70982 22897262 ~ 22935152 (-) False LOC110525519
XM_021605695.2 mRNA downstream 70982 22897262 ~ 22935152 (-) True LOC110525519
XM_021605718.2 mRNA upstream 19047 23029762 ~ 23049796 (-) False LOC110525530
XM_021605719.2 mRNA upstream 19047 23029762 ~ 23049799 (-) True LOC110525530
XM_021605717.2 mRNA upstream 50316 23061031 ~ 23064135 (-) True LOC110525529
XM_036979640.1 mRNA upstream 212380 23223095 ~ 23315185 (-) True LOC110525124
XM_021605724.2 mRNA upstream 386309 23397024 ~ 23410695 (-) True LOC110525535
TU553165 other downstream 165568 22837653 ~ 22840566 (-) True G486716
TU552199 other downstream 725108 22280726 ~ 22281026 (-) True G485877
TU552186 other downstream 742781 22260634 ~ 22263353 (-) True G485864
TU551550 other downstream 1171774 21833548 ~ 21834360 (-) True G485279
TU551114 other downstream 1571415 21431930 ~ 21434719 (-) True G484895
TU553428 other upstream 240571 23251286 ~ 23253361 (-) False G486953
TU553500 other upstream 374819 23385534 ~ 23385907 (-) True G487022
TU553494 other upstream 379302 23390017 ~ 23392062 (-) True G487016
TU554033 other upstream 572321 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other upstream 572321 23583036 ~ 23585554 (-) True LOC110525180

Expression Profile