RNA id: TU553502


Basic Information

Item Value
RNA id TU553502
length 282
lncRNA type intronic
GC content 0.41
exon number 1
gene id G487024
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23386999 ~ 23387280 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATtttcatatgtacagtaccagtcaaaagtttggacacacctactcattagtttaaccatgttatgaggctatacagtgtttgtttacatttacaatgtttacaaacactggagaatgctggaatgcttttccaacagtcttgaaggagttcccacatatgctgagcacttgttggctgcttttccttcactctgcagtccaactcatcccaaaccaggtCATCAGGTAATCTGAtccagcactcaatcactctccttcttggtcaaatagcccttacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU553501 lncRNA downstream 350 23386281 ~ 23386649 (-) True G487023
TU553499 lncRNA downstream 8660 23378031 ~ 23378339 (-) True G487021
TU553485 lncRNA downstream 26971 23359179 ~ 23360028 (-) True G487008
TU553482 lncRNA downstream 31101 23355515 ~ 23355898 (-) True G487005
TU553478 lncRNA downstream 35832 23350693 ~ 23351167 (-) True G487001
TU553503 lncRNA upstream 18 23387298 ~ 23387862 (-) True G487025
TU553504 lncRNA upstream 731 23388011 ~ 23388560 (-) True G487026
TU553492 lncRNA upstream 5686 23392966 ~ 23393609 (-) True G487014
TU553493 lncRNA upstream 6618 23393898 ~ 23394532 (-) True G487015
TU553495 lncRNA upstream 9101 23396381 ~ 23396704 (-) True G487017
XM_036979640.1 mRNA downstream 71814 23223095 ~ 23315185 (-) True LOC110525124
XM_021605717.2 mRNA downstream 322864 23061031 ~ 23064135 (-) True LOC110525529
XM_021605719.2 mRNA downstream 337200 23029762 ~ 23049799 (-) True LOC110525530
XM_021605718.2 mRNA downstream 337203 23029762 ~ 23049796 (-) False LOC110525530
XM_036979659.1 mRNA downstream 389053 22993425 ~ 22997946 (-) True anapc7
XM_021605724.2 mRNA upstream 9744 23397024 ~ 23410695 (-) True LOC110525535
XM_036979667.1 mRNA upstream 23776 23411056 ~ 23446557 (-) True LOC110525536
XM_036979668.1 mRNA upstream 72260 23459540 ~ 23467753 (-) False LOC110525537
XM_021605726.2 mRNA upstream 72260 23459540 ~ 23490066 (-) False LOC110525537
XM_021605728.2 mRNA upstream 72260 23459540 ~ 23490066 (-) False LOC110525537
TU553500 other downstream 1092 23385534 ~ 23385907 (-) True G487022
TU553428 other downstream 133638 23251286 ~ 23253361 (-) False G486953
TU553165 other downstream 546433 22837653 ~ 22840566 (-) True G486716
TU552199 other downstream 1105973 22280726 ~ 22281026 (-) True G485877
TU552186 other downstream 1123646 22260634 ~ 22263353 (-) True G485864
TU553494 other upstream 2737 23390017 ~ 23392062 (-) True G487016
TU554033 other upstream 195756 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other upstream 195756 23583036 ~ 23585554 (-) True LOC110525180
TU554111 other upstream 326595 23713875 ~ 23717783 (-) True LOC110525552
TU555138 other upstream 966253 24353533 ~ 24353823 (-) True G488386

Expression Profile