RNA id: TU555276


Basic Information

Item Value
RNA id TU555276
length 509
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G488508
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24643709 ~ 24644217 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTCATTTGTCGTGGCATGTGGGGTGTTTCGGTAGGAGGCCAGGAACTTGGCCAGTTTTGTTTGCTAAGTCCCTTCGTCTCGTTTTGCTGCACAGAGTCCTTGCTTTAGGGTTTGCACAAAGCGTTCTGCCAGCCCATTGGTGGCAGGGTGGTACGGAGCTGAGGTTGAGTGTTTGATTCCATTTACTGACATGAATCTTGTAAACTCGTCACTTACAAAAGCTTGCGCGTTGTCACTTACCAGCTGCAGTGGCAAACTGAAGCGTGCAAACGTTGTTCTGAGACACTCTATCGTCTGAGCTGAGGTGGAGGAGTCAGTGCAAAACACCTCTGGACATTTGGAATGGGCATCAACTATAACCAGAAACATGTGCTTTTCAAAAGGACCAGCGTAGTCCACATGAATTCTCTGCCATGGCTCGACGGGCCATTCCCATGGGTGGACTGGGACAGGAGCAGGCATGTGAAGGGTTTCCAAACATCCACTACAGTTCTTTGCCATATTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU555275 lncRNA downstream 930 24642217 ~ 24642779 (-) True G488507
TU555274 lncRNA downstream 1525 24641958 ~ 24642184 (-) True G488506
TU555273 lncRNA downstream 2954 24640525 ~ 24640755 (-) True G488505
TU555254 lncRNA downstream 47649 24592542 ~ 24596060 (-) True G488487
TU555238 lncRNA downstream 50224 24545395 ~ 24593485 (-) True G488471
TU555301 lncRNA upstream 31104 24675321 ~ 24675587 (-) True G488533
TU555311 lncRNA upstream 41869 24686086 ~ 24686286 (-) True G488543
TU555303 lncRNA upstream 56152 24700369 ~ 24700758 (-) True G488535
TU555287 lncRNA upstream 70230 24714447 ~ 24715051 (-) True LOC110525585
TU555342 lncRNA upstream 100645 24744862 ~ 24788105 (-) True G488574
XM_036979699.1 mRNA downstream 9351 24597970 ~ 24634358 (-) False ep400
XM_036979707.1 mRNA upstream 11571 24655788 ~ 24715088 (-) False LOC110525585
XM_036979708.1 mRNA upstream 11571 24655788 ~ 24715089 (-) False LOC110525585
XM_036979705.1 mRNA upstream 11571 24655788 ~ 24715090 (-) False LOC110525585
XM_036979706.1 mRNA upstream 11571 24655788 ~ 24715090 (-) False LOC110525585
XM_021605835.2 mRNA upstream 229006 24873223 ~ 24885005 (-) False piwil1
TU555138 other downstream 289886 24353533 ~ 24353823 (-) True G488386
TU554111 other downstream 925926 23713875 ~ 23717783 (-) True LOC110525552
TU554033 other downstream 1058155 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other downstream 1058155 23583036 ~ 23585554 (-) True LOC110525180
TU553494 other downstream 1251647 23390017 ~ 23392062 (-) True G487016
TU555289 other upstream 16680 24660897 ~ 24674901 (-) False LOC110525585
TU555288 other upstream 62354 24706571 ~ 24709420 (-) False LOC110525585
TU555826 other upstream 461988 25106205 ~ 25106570 (-) True G489038
TU556319 other upstream 852746 25496963 ~ 25497489 (-) True G489511
TU557298 other upstream 1635490 26279707 ~ 26283169 (-) True LOC110525606

Expression Profile