RNA id: TU555303


Basic Information

Item Value
RNA id TU555303
length 314
lncRNA type intronic
GC content 0.42
exon number 2
gene id G488535
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24700369 ~ 24700758 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaactctgagactatcacagtgcaggtgcatttatacggagacttgattacacactggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtagaggggctgaataattttgcacgcccaatttttc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU555311 lncRNA downstream 14083 24686086 ~ 24686286 (-) True G488543
TU555301 lncRNA downstream 24782 24675321 ~ 24675587 (-) True G488533
TU555276 lncRNA downstream 56152 24643709 ~ 24644217 (-) True G488508
TU555275 lncRNA downstream 57590 24642217 ~ 24642779 (-) True G488507
TU555274 lncRNA downstream 58185 24641958 ~ 24642184 (-) True G488506
TU555287 lncRNA upstream 13689 24714447 ~ 24715051 (-) True LOC110525585
TU555342 lncRNA upstream 44104 24744862 ~ 24788105 (-) True G488574
TU555387 lncRNA upstream 98758 24799516 ~ 24800711 (-) True G488618
TU555390 lncRNA upstream 102808 24803566 ~ 24804010 (-) True G488620
TU555417 lncRNA upstream 136838 24837596 ~ 24839086 (-) True G488645
XM_036979699.1 mRNA downstream 66011 24597970 ~ 24634358 (-) False ep400
XM_021605835.2 mRNA upstream 172465 24873223 ~ 24885005 (-) False piwil1
XM_021605836.2 mRNA upstream 172465 24873223 ~ 24885005 (-) True piwil1
XM_021605837.2 mRNA upstream 210869 24911627 ~ 24917852 (-) True LOC110525589
XM_021605839.2 mRNA upstream 472103 25172861 ~ 25375480 (-) False LOC110525591
XM_036979719.1 mRNA upstream 472103 25172861 ~ 25375482 (-) False LOC110525591
TU555289 other downstream 25468 24660897 ~ 24674901 (-) False LOC110525585
TU555138 other downstream 346546 24353533 ~ 24353823 (-) True G488386
TU554111 other downstream 982586 23713875 ~ 23717783 (-) True LOC110525552
TU554033 other downstream 1114815 23583036 ~ 23585554 (-) False LOC110525180
TU555288 other upstream 5813 24706571 ~ 24709420 (-) False LOC110525585
TU555826 other upstream 405447 25106205 ~ 25106570 (-) True G489038
TU556319 other upstream 796205 25496963 ~ 25497489 (-) True G489511
TU557298 other upstream 1578949 26279707 ~ 26283169 (-) True LOC110525606
TU557449 other upstream 1754974 26455732 ~ 26457841 (-) True tmem230b

Expression Profile